Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000381.1

Orthogroup ID

OG0009029

Physical Location & Seq

Genomic Coordinates Reverse (-)

88530 .. 88877

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000381.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgaaaatagacggctttgatcggctcccggaccccgtgatcttacagatcttcgacctggtctcggacaccaagaccctcattcgctgcctcgccatttcgaaaccctttaactccctcgtcccccacattgactccctagtcctcatcgtcaaccggctcatctcctccgactccgacgatgacttttccaacttccttgcctctgcactttccgtctatgttagtgatgcgatcgatacagggttggggaaacgatgtgtcgttgtcccagaagagttcgtcgttgatggggaggggtttgtcaaggacgatgtgtttgccgacgggaggcccatgccggcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010540 GO:0010541 GO:0010817 GO:0023052 GO:0030054 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

115

Amino Acids

12.56

Weight (kDa)

4.27

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22220 AT1G78100
fragaria_vesca	FvH4_5g37750
malus_domestica	MD15G1366300.v1.1
prunus_persica	Prupe.1G514000_v2.0.a1
pyrus_communis	pycom15g32850
rosa_chinensis	RchiOBHm_Chr7g0239491
rosa_laevigata	RLG00000000753 RLG00000018504
rosa_multiflora	Rmu_co8072600.1_g000001 Rmu_sc0000381.1_g000021 Rmu_sc0000760.1_g000010 Rmu_sc0004058.1_g000019
rosa_roxburghii	Rroxscaffold_1G00005340 Rroxscaffold_3G00220890
rosa_rugosa	Rorug07G0328300.1
rosa_samantha	Rh2BG504200 Rh6AG395700 Rh7BG454700 Rh7CG499800 Rh7DG467900
rosa_wichuraiana	Rw7G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AfiI	CCNNNNNNNGG	2 cut(s)	64, 330
AjnI	CCWGG	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	87
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspS9I	GGNCC	2 cut(s)	31, 333
AsuC2I	CCSGG	1 cut(s)	29
AsuII	TTCGAA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	1 cut(s)	284
BceAI	ACGGC	1 cut(s)	28
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BciT130I	CCWGG	1 cut(s)	59
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	140
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	2 cut(s)	29, 59
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	31, 333
BmiI	GGNNCC	2 cut(s)	26, 33
BmrFI	CCNGG	2 cut(s)	29, 59
BmsI	GCATC	1 cut(s)	220
Bpu14I	TTCGAA	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	29
Bsa29I	ATCGAT	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 330
Bse118I	RCCGGY	2 cut(s)	156, 340
BseBI	CCWGG	1 cut(s)	59
BseCI	ATCGAT	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	64, 330
BseRI	GAGGAG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	334
BshVI	ATCGAT	1 cut(s)	237
BsiEI	CGRYCG	1 cut(s)	237
BsiSI	CCGG	3 cut(s)	29, 157, 341
BslFI	GGGAC	2 cut(s)	107, 254
BslI	CCNNNNNNNGG	2 cut(s)	64, 330
BsmAI	GTCTC	1 cut(s)	67
BsmFI	GGGAC	2 cut(s)	107, 254
BsnI	GGCC	1 cut(s)	334
Bso31I	GGTCTC	1 cut(s)	67
Bsp119I	TTCGAA	1 cut(s)	101
Bsp143I	GATC	4 cut(s)	19, 39, 48, 234
BspANI	GGCC	1 cut(s)	334
BspDI	ATCGAT	1 cut(s)	237
BspLI	GGNNCC	2 cut(s)	26, 33
BspT104I	TTCGAA	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	67
BsrFI	RCCGGY	2 cut(s)	156, 340
BssAI	RCCGGY	2 cut(s)	156, 340
BssMI	GATC	4 cut(s)	19, 39, 48, 234
Bst2UI	CCWGG	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	270
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	342
BstKTI	GATC	4 cut(s)	22, 42, 51, 237
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	4 cut(s)	19, 39, 48, 234
BstMCI	CGRYCG	1 cut(s)	237
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	27, 57
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	334
BsuTUI	ATCGAT	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	342
Cfr10I	RCCGGY	2 cut(s)	156, 340
Cfr13I	GGNCC	2 cut(s)	31, 333
ClaI	ATCGAT	1 cut(s)	237
CsiI	ACCWGGT	1 cut(s)	57
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	4 cut(s)	15, 25, 160, 334
CviKI_1	RGCY	4 cut(s)	15, 25, 160, 334
DpnI	GATC	4 cut(s)	21, 41, 50, 236
DpnII	GATC	4 cut(s)	19, 39, 48, 234
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	57
FaeI	CATG	1 cut(s)	340
FaiI	YATR	3 cut(s)	222, 338, 346
FaqI	GGGAC	2 cut(s)	107, 254
FatI	CATG	1 cut(s)	336
Fnu4HI	GCNGC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	334
HapII	CCGG	3 cut(s)	29, 157, 341
Hin1II	CATG	1 cut(s)	340
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	134, 173
HpaII	CCGG	3 cut(s)	29, 157, 341
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	3 cut(s)	67, 172, 178
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	3 cut(s)	182, 287, 329
HpyCH4V	TGCA	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	340
KroI	GCCGGC	1 cut(s)	340
KroNI	GCCGGC	1 cut(s)	342
Kzo9I	GATC	4 cut(s)	19, 39, 48, 234
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	6 cut(s)	42, 44, 71, 170, 228, 285
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	1 cut(s)	220
MabI	ACCWGGT	1 cut(s)	57
MaeI	CTAG	1 cut(s)	140
MalI	GATC	4 cut(s)	21, 41, 50, 236
MboI	GATC	4 cut(s)	19, 39, 48, 234
MboII	GAAGA	2 cut(s)	43, 287
MflI	RGATCY	1 cut(s)	48
MlyI	GAGTC	2 cut(s)	128, 167
MmeI	TCCRAC	3 cut(s)	195, 201, 216
MnlI	CCTC	8 cut(s)	89, 101, 128, 155, 178, 214, 289, 324
MroNI	GCCGGC	1 cut(s)	340
MseI	TTAA	1 cut(s)	111
MspI	CCGG	3 cut(s)	29, 157, 341
MspR9I	CCNGG	2 cut(s)	29, 59
MvaI	CCWGG	1 cut(s)	59
NaeI	GCCGGC	1 cut(s)	342
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	4 cut(s)	19, 39, 48, 234
NgoMIV	GCCGGC	1 cut(s)	340
NlaIII	CATG	1 cut(s)	340
NlaIV	GGNNCC	2 cut(s)	26, 33
NspV	TTCGAA	1 cut(s)	101
PdiI	GCCGGC	1 cut(s)	342
PflFI	GACNNNGTC	1 cut(s)	59
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	89
Ple19I	CGATCG	1 cut(s)	237
PleI	GAGTC	2 cut(s)	128, 167
PpsI	GAGTC	2 cut(s)	128, 167
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	26, 33
PspPI	GGNCC	2 cut(s)	31, 333
PsuI	RGATCY	1 cut(s)	48
PsyI	GACNNNGTC	1 cut(s)	59
PvuI	CGATCG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	4 cut(s)	19, 39, 48, 234
Sau96I	GGNCC	2 cut(s)	31, 333
SchI	GAGTC	2 cut(s)	128, 167
ScrFI	CCNGG	2 cut(s)	29, 59
SetI	ASST	1 cut(s)	60
SexAI	ACCWGGT	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	220
SfuI	TTCGAA	1 cut(s)	101
SinI	GGWCC	1 cut(s)	31
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	27, 57
TaqI	TCGA	3 cut(s)	54, 101, 237
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseI	GCWGC	1 cut(s)	87
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	205
Tth111I	GACNNNGTC	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	31
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.