Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009029

Physical Location & Seq

Genomic Coordinates Forward (+)

42314344 .. 42316662

Gene Structure 2319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G514000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGACGGCTTCGATCGACTCCCGGACTCACTGATCCTCCAGATCTTCGACTTGGTCTCCGACGTCAAGACGCTCATCCGCTGCCGCGCCGTGTCGAAGCGGTTCAACTCGCTCGTTCCCCAAACCGACTCGCTCCTTTTAACCGTCGACCGAGTCATCTCATCCGATTCGGACTCGGATTCGGCGAACGACGACGTTTCGCACCTCCTGGTTACCTTCCTGAAGTCCATTCTGAAATCGATCCACGACCTCGTCTCGGCGAGGCCCGACCCGACCCGGGCCCGCTCCCAGAACTCGCCCGCCCAGATCCTCCGGTCCTTCCACAACGTCCGAAACCTCTCGATCGAGCTGCCCTCCGGGGATCTCAGGCTCGAGAAGGGCACGGTGCTGAAATGGCGAGCGGATTTCGGGAAGACCTTGAGGAGCTGTGTGATCCTCGGGTTCCGATCGGTCGTCGCCGGCGGGGAAACGCCGGTGCCCGGAGATGACGCGGACTTCGCCGGAGGGCTGAAGGTGCGGGTGGTGTGGACGATCAGCGCGCTGATCGCGGCATCGGCGAGGCACTACTTGCTGAAGGAGGTGGTGAGGGAGCAGAGAGGGCTGGAAACGCTGGTTCTGAGAGACAGAGAAGGAGAAGGCGTGGTGGTGATGGAGAAGGAAGGGTTGAGAGAGTGCGGGAGGGAGGACACGTGTGATGCGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGGATGGGATAGGGGAAGGAGCAGGGTGCCTAGCGTGAGGATGCGGATGAGGCACGTGCCGAGAATGGAACTGAAGGGTGGGGTTTGGGTGGAGGGCGCGACACTTGTTGTGGTGAGGCCGAGTTTGAGCGGTGACGTGGAGGACGGTGATTTGGCGATGGGGGCATTTGGCGGGGATGTGCTTTACGGGGAAGTTGTAGAGGCTTTGCTCAAGGCCAAGAGTTATTTACTGGAAATGAACTCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010540 GO:0010541 GO:0010817 GO:0023052 GO:0030054 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

326

Amino Acids

35.98

Weight (kDa)

5.14

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22220 AT1G78100
fragaria_vesca	FvH4_5g37750
malus_domestica	MD15G1366300.v1.1
prunus_persica	Prupe.1G514000_v2.0.a1
pyrus_communis	pycom15g32850
rosa_chinensis	RchiOBHm_Chr7g0239491
rosa_laevigata	RLG00000000753 RLG00000018504
rosa_multiflora	Rmu_co8072600.1_g000001 Rmu_sc0000381.1_g000021 Rmu_sc0000760.1_g000010 Rmu_sc0004058.1_g000019
rosa_roxburghii	Rroxscaffold_1G00005340 Rroxscaffold_3G00220890
rosa_rugosa	Rorug07G0328300.1
rosa_samantha	Rh2BG504200 Rh6AG395700 Rh7BG454700 Rh7CG499800 Rh7DG467900
rosa_wichuraiana	Rw7G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	66
AccB1I	GGYRCC	2 cut(s)	475, 754
AccBSI	CCGCTC	3 cut(s)	285, 401, 858
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	5 cut(s)	87, 491, 539, 548, 827
AclWI	GGATC	5 cut(s)	28, 235, 301, 369, 427
AcuI	CTGAAG	4 cut(s)	242, 530, 593, 821
AcvI	CACGTG	2 cut(s)	690, 784
AcyI	GRCGYC	1 cut(s)	63
AfiI	CCNNNNNNNGG	3 cut(s)	256, 277, 479
AflIII	ACRYGT	2 cut(s)	687, 689
AgsI	TTSAA	1 cut(s)	106
AjiI	CACGTC	1 cut(s)	865
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	2 cut(s)	349, 426
AluI	AGCT	2 cut(s)	349, 426
Alw26I	GTCTC	3 cut(s)	61, 259, 615
AlwI	GGATC	5 cut(s)	28, 235, 301, 369, 427
Ama87I	CYCGRG	3 cut(s)	276, 371, 437
AoxI	GGCC	4 cut(s)	263, 279, 845, 942
ApaI	GGGCCC	1 cut(s)	283
ApeKI	GCWGC	2 cut(s)	81, 349
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
Asp700I	GAANNNNTTC	2 cut(s)	101, 971
AspLEI	GCGC	4 cut(s)	89, 539, 541, 827
AspS9I	GGNCC	4 cut(s)	264, 279, 280, 315
AsuC2I	CCSGG	5 cut(s)	23, 277, 278, 358, 480
AsuHPI	GGTGA	5 cut(s)	595, 658, 853, 872, 887
AvaI	CYCGRG	3 cut(s)	276, 371, 437
AvaII	GGWCC	1 cut(s)	315
BaeGI	GKGCMC	3 cut(s)	283, 383, 480
BanI	GGYRCC	2 cut(s)	475, 754
BanII	GRGCYC	1 cut(s)	283
BbrPI	CACGTG	2 cut(s)	690, 784
BbsI	GAAGAC	1 cut(s)	419
BbvI	GCAGC	2 cut(s)	68, 336
BccI	CCATC	3 cut(s)	643, 726, 880
BceAI	ACGGC	2 cut(s)	22, 74
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BciT130I	CCWGG	1 cut(s)	209
BcnI	CCSGG	5 cut(s)	23, 277, 278, 358, 480
BcoDI	GTCTC	3 cut(s)	61, 259, 615
BfaI	CTAG	1 cut(s)	759
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	4 cut(s)	82, 85, 350, 549
BlsI	GCNGC	4 cut(s)	83, 86, 351, 550
Bme1390I	CCNGG	6 cut(s)	23, 209, 277, 278, 358, 480
Bme18I	GGWCC	1 cut(s)	315
BmeT110I	CYCGRG	3 cut(s)	276, 371, 437
BmgBI	CACGTC	1 cut(s)	865
BmgT120I	GGNCC	4 cut(s)	264, 279, 280, 315
BmiI	GGNNCC	4 cut(s)	281, 443, 477, 756
BmrFI	CCNGG	6 cut(s)	23, 209, 277, 278, 358, 480
BmsI	GCATC	3 cut(s)	560, 685, 759
BpiI	GAAGAC	1 cut(s)	419
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpmI	CTGGAG	1 cut(s)	23
BpuEI	CTTGAG	2 cut(s)	439, 923
BpuMI	CCSGG	5 cut(s)	23, 277, 278, 358, 480
Bsa29I	ATCGAT	1 cut(s)	239
BsaAI	YACGTR	2 cut(s)	690, 784
BsaHI	GRCGYC	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	3 cut(s)	276, 357, 436
BsaWI	WCCGGW	1 cut(s)	312
BsaXI	ACNNNNNCTCC	8 cut(s)	21, 41, 51, 71, 624, 654, 674, 704
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 277, 479
Bse118I	RCCGGY	2 cut(s)	458, 472
Bse1I	ACTGG	1 cut(s)	963
BseBI	CCWGG	1 cut(s)	209
BseCI	ATCGAT	1 cut(s)	239
BseDI	CCNNGG	3 cut(s)	276, 357, 436
BseGI	GGATG	6 cut(s)	75, 161, 737, 774, 780, 910
BseLI	CCNNNNNNNGG	3 cut(s)	256, 277, 479
BseMII	CTCAG	2 cut(s)	379, 608
BseNI	ACTGG	1 cut(s)	963
BsePI	GCGCGC	1 cut(s)	537
BseRI	GAGGAG	8 cut(s)	436, 716, 719, 722, 725, 728, 737, 740
BseSI	GKGCMC	3 cut(s)	283, 383, 480
BseXI	GCAGC	2 cut(s)	68, 336
Bsh1236I	CGCG	5 cut(s)	87, 491, 539, 548, 827
Bsh1285I	CGRYCG	5 cut(s)	16, 151, 345, 449, 453
BshFI	GGCC	4 cut(s)	265, 281, 847, 944
BshNI	GGYRCC	2 cut(s)	475, 754
BshVI	ATCGAT	1 cut(s)	239
BsiEI	CGRYCG	5 cut(s)	16, 151, 345, 449, 453
BsiHKCI	CYCGRG	3 cut(s)	276, 371, 437
BsiSI	CCGG	8 cut(s)	23, 277, 313, 357, 459, 473, 480, 501
BslI	CCNNNNNNNGG	3 cut(s)	256, 277, 479
BsmAI	GTCTC	3 cut(s)	61, 259, 615
BsmBI	CGTCTC	1 cut(s)	259
BsnI	GGCC	4 cut(s)	265, 281, 847, 944
Bso31I	GGTCTC	1 cut(s)	61
BsoBI	CYCGRG	3 cut(s)	276, 371, 437
Bsp120I	GGGCCC	1 cut(s)	279
Bsp1286I	GDGCHC	3 cut(s)	283, 383, 480
BspANI	GGCC	4 cut(s)	265, 281, 847, 944
BspCNI	CTCAG	2 cut(s)	378, 609
BspDI	ATCGAT	1 cut(s)	239
BspFNI	CGCG	5 cut(s)	87, 491, 539, 548, 827
BspLI	GGNNCC	4 cut(s)	281, 443, 477, 756
BspPI	GGATC	5 cut(s)	28, 235, 301, 369, 427
BspT107I	GGYRCC	2 cut(s)	475, 754
BspTNI	GGTCTC	1 cut(s)	61
BsrBI	CCGCTC	3 cut(s)	285, 401, 858
BsrFI	RCCGGY	2 cut(s)	458, 472
BsrI	ACTGG	1 cut(s)	963
BssAI	RCCGGY	2 cut(s)	458, 472
BssECI	CCNNGG	3 cut(s)	276, 357, 436
BssHII	GCGCGC	1 cut(s)	537
BssNI	GRCGYC	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	3 cut(s)	145, 385, 875
BstACI	GRCGYC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	568
BstBAI	YACGTR	2 cut(s)	690, 784
BstC8I	GCNNGC	5 cut(s)	283, 300, 399, 460, 539
BstDEI	CTNAG	2 cut(s)	365, 617
BstEII	GGTNACC	1 cut(s)	211
BstF5I	GGATG	6 cut(s)	75, 161, 737, 774, 780, 910
BstFNI	CGCG	5 cut(s)	87, 491, 539, 548, 827
BstHHI	GCGC	4 cut(s)	89, 539, 541, 827
BstMAI	GTCTC	3 cut(s)	61, 259, 615
BstMCI	CGRYCG	5 cut(s)	16, 151, 345, 449, 453
BstNI	CCWGG	1 cut(s)	209
BstPI	GGTNACC	1 cut(s)	211
BstSCI	CCNGG	6 cut(s)	21, 207, 275, 276, 356, 478
BstSLI	GKGCMC	3 cut(s)	283, 383, 480
BstUI	CGCG	5 cut(s)	87, 491, 539, 548, 827
BstV1I	GCAGC	2 cut(s)	68, 336
BstV2I	GAAGAC	1 cut(s)	419
BstX2I	RGATCY	3 cut(s)	42, 306, 361
BstYI	RGATCY	3 cut(s)	42, 306, 361
Bsu15I	ATCGAT	1 cut(s)	239
BsuRI	GGCC	4 cut(s)	265, 281, 847, 944
BsuTUI	ATCGAT	1 cut(s)	239
BtgZI	GCGATG	1 cut(s)	899
BtrI	CACGTC	1 cut(s)	865
BtsCI	GGATG	6 cut(s)	75, 161, 737, 774, 780, 910
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	5 cut(s)	283, 300, 399, 460, 539
CfoI	GCGC	4 cut(s)	89, 539, 541, 827
Cfr10I	RCCGGY	2 cut(s)	458, 472
Cfr13I	GGNCC	4 cut(s)	264, 279, 280, 315
Cfr9I	CCCGGG	1 cut(s)	276
ClaI	ATCGAT	1 cut(s)	239
CseI	GACGC	2 cut(s)	79, 497
DdeI	CTNAG	2 cut(s)	365, 617
Eco24I	GRGCYC	1 cut(s)	283
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	315
Eco57I	CTGAAG	4 cut(s)	242, 530, 593, 821
Eco72I	CACGTG	2 cut(s)	690, 784
Eco88I	CYCGRG	3 cut(s)	276, 371, 437
Eco91I	GGTNACC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	283
Esp3I	CGTCTC	1 cut(s)	259
FauI	CCCGC	6 cut(s)	290, 307, 455, 510, 668, 893
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	82, 85, 350, 549
FokI	GGATG	6 cut(s)	62, 148, 744, 781, 787, 917
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	4 cut(s)	82, 85, 350, 549
FspBI	CTAG	1 cut(s)	759
GlaI	GCGC	4 cut(s)	88, 538, 540, 826
GluI	GCNGC	4 cut(s)	82, 85, 350, 549
GsuI	CTGGAG	1 cut(s)	23
HaeIII	GGCC	4 cut(s)	265, 281, 847, 944
HapII	CCGG	8 cut(s)	23, 277, 313, 357, 459, 473, 480, 501
HgaI	GACGC	2 cut(s)	79, 497
HhaI	GCGC	4 cut(s)	89, 539, 541, 827
Hin1I	GRCGYC	1 cut(s)	63
Hin6I	GCGC	4 cut(s)	87, 537, 539, 825
HinP1I	GCGC	4 cut(s)	87, 537, 539, 825
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	7 cut(s)	18, 26, 128, 153, 167, 173, 179
HpaII	CCGG	8 cut(s)	23, 277, 313, 357, 459, 473, 480, 501
HphI	GGTGA	5 cut(s)	595, 658, 853, 872, 887
Hpy166II	GTNNAC	2 cut(s)	148, 528
Hpy188I	TCNGA	8 cut(s)	61, 166, 172, 178, 234, 332, 446, 618
Hpy188III	TCNNGA	6 cut(s)	40, 67, 220, 340, 373, 409
Hpy8I	GTNNAC	2 cut(s)	148, 528
Hpy99I	CGWCG	5 cut(s)	65, 149, 194, 197, 458
HpyCH4III	ACNGT	3 cut(s)	145, 385, 875
HpyCH4IV	ACGT	6 cut(s)	63, 195, 327, 689, 783, 864
HpyF3I	CTNAG	2 cut(s)	365, 617
HpySE526I	ACGT	6 cut(s)	63, 195, 327, 689, 783, 864
Hsp92I	GRCGYC	1 cut(s)	63
HspAI	GCGC	4 cut(s)	87, 537, 539, 825
KroI	GCCGGC	1 cut(s)	458
KroNI	GCCGGC	1 cut(s)	460
LmnI	GCTCC	5 cut(s)	138, 290, 423, 589, 747
Lsp1109I	GCAGC	2 cut(s)	68, 336
LweI	GCATC	3 cut(s)	560, 685, 759
MaeI	CTAG	1 cut(s)	759
MaeII	ACGT	6 cut(s)	63, 195, 327, 689, 783, 864
MaeIII	GTNAC	2 cut(s)	211, 860
MbiI	CCGCTC	3 cut(s)	285, 401, 858
MboII	GAAGA	2 cut(s)	37, 424
MflI	RGATCY	3 cut(s)	42, 306, 361
MhlI	GDGCHC	3 cut(s)	283, 383, 480
MlyI	GAGTC	5 cut(s)	12, 20, 122, 162, 167
MmeI	TCCRAC	1 cut(s)	84
MreI	CGCCGGCG	1 cut(s)	458
MroNI	GCCGGC	1 cut(s)	458
MroXI	GAANNNNTTC	2 cut(s)	101, 971
MseI	TTAA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	8 cut(s)	23, 277, 313, 357, 459, 473, 480, 501
MspR9I	CCNGG	6 cut(s)	23, 209, 277, 278, 358, 480
MvaI	CCWGG	1 cut(s)	209
MvnI	CGCG	5 cut(s)	87, 491, 539, 548, 827
NaeI	GCCGGC	1 cut(s)	460
NciI	CCSGG	5 cut(s)	23, 277, 278, 358, 480
NgoMIV	GCCGGC	1 cut(s)	458
NlaIV	GGNNCC	4 cut(s)	281, 443, 477, 756
NmeAIII	GCCGAG	3 cut(s)	236, 813, 873
NmuCI	GTSAC	1 cut(s)	860
PaeR7I	CTCGAG	1 cut(s)	371
PauI	GCGCGC	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PdiI	GCCGGC	1 cut(s)	460
PdmI	GAANNNNTTC	2 cut(s)	101, 971
PfeI	GAWTC	2 cut(s)	167, 179
PflFI	GACNNNGTC	3 cut(s)	53, 152, 251
PfoI	TCCNGGA	1 cut(s)	21
PkrI	GCNGC	4 cut(s)	83, 86, 351, 550
Ple19I	CGATCG	3 cut(s)	16, 345, 449
PleI	GAGTC	5 cut(s)	12, 20, 122, 161, 167
PmaCI	CACGTG	2 cut(s)	690, 784
PmlI	CACGTG	2 cut(s)	690, 784
PpsI	GAGTC	5 cut(s)	12, 20, 122, 161, 167
Ppu21I	YACGTR	2 cut(s)	690, 784
Psp6I	CCWGG	1 cut(s)	207
PspCI	CACGTG	2 cut(s)	690, 784
PspEI	GGTNACC	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	4 cut(s)	281, 443, 477, 756
PspOMI	GGGCCC	1 cut(s)	279
PspPI	GGNCC	4 cut(s)	264, 279, 280, 315
PsuI	RGATCY	3 cut(s)	42, 306, 361
PsyI	GACNNNGTC	3 cut(s)	53, 152, 251
PteI	GCGCGC	1 cut(s)	537
PvuI	CGATCG	3 cut(s)	16, 345, 449
SalI	GTCGAC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	4 cut(s)	82, 85, 350, 549
Sau96I	GGNCC	4 cut(s)	264, 279, 280, 315
SchI	GAGTC	5 cut(s)	12, 20, 122, 162, 167
ScrFI	CCNGG	6 cut(s)	23, 209, 277, 278, 358, 480
SduI	GDGCHC	3 cut(s)	283, 383, 480
SfaNI	GCATC	3 cut(s)	560, 685, 759
Sfr274I	CTCGAG	1 cut(s)	371
SgrAI	CRCCGGYG	2 cut(s)	458, 472
SinI	GGWCC	1 cut(s)	315
SlaI	CTCGAG	1 cut(s)	371
SmaI	CCCGGG	1 cut(s)	278
SmlI	CTYRAG	3 cut(s)	371, 418, 938
SmoI	CTYRAG	3 cut(s)	371, 418, 938
SspMI	CTAG	1 cut(s)	759
StyD4I	CCNGG	6 cut(s)	21, 207, 275, 276, 356, 478
TaaI	ACNGT	3 cut(s)	145, 385, 875
TaiI	ACGT	6 cut(s)	66, 198, 330, 692, 786, 867
TaqI	TCGA	9 cut(s)	12, 16, 48, 95, 147, 239, 341, 345, 372
TaqII	GACCGA	2 cut(s)	165, 439
TauI	GCSGC	2 cut(s)	87, 551
TfiI	GAWTC	2 cut(s)	167, 179
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	860
TseI	GCWGC	2 cut(s)	81, 349
Tsp45I	GTSAC	1 cut(s)	860
TspMI	CCCGGG	1 cut(s)	276
TspRI	CASTG	1 cut(s)	36
Tth111I	GACNNNGTC	3 cut(s)	53, 152, 251
VpaK11BI	GGWCC	1 cut(s)	315
XhoI	CTCGAG	1 cut(s)	371
XmaI	CCCGGG	1 cut(s)	276
XmiI	GTMKAC	1 cut(s)	147
XmnI	GAANNNNTTC	2 cut(s)	101, 971
XspI	CTAG	1 cut(s)	759
ZraI	GACGTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.