Rh7BG454700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0009029
Physical Location & Seq
Reverse (-)
53607500 .. 53608483
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG454700.1

Sequence Viewer

Length: 984 bp
ATGGACGGCTTCGATCGACTGCCGGACCCGGTGATCCTCCAGATCTTCGACCTGGTCTCGGACACCAAGACCCTCATTCGCTGCCTCGCCGTTTCGAAACGCTTCAACTCCCTCGTCCCTCACACCGACTCCCTAGTCCTCACCGTCGACCGCGTCATCTCCTCCGACTCCGACTCCGACTCAGACGACGACGTTTCCAACCTCCTCGCCTCCGCCTTCCGCTACATCCTCAAGTCTCTCCACAGCCTCGTCTCCCCCAAGCCCAACAACAACAACAACAACCCGACCCGGACCCGGATCCCCAACTGCCCCGCCCAGATCCTCCGCTGCTTCCACCGCGTCAAGCGCCTCGCGATCGACCTCCCCTCCGGCGACCTCCGCCTCGAGAAGGGGACCGTTCTCAAGTGGAGAGCCGAGTTCGGGAAAACCCTCCGGACCTGCGTCATCCTGGGGTTCCGATCCGTCGGGGAGACTCCGTCGCAGGTGACGGCCGGAGCTGAGCCCGACTTCGCCGGCGGGCTGAAGGTGCGGGTGGTGTGGACGATCAGTGCTCTGATCGCGGCGTCGGCGAGGCACTATTTGCTGAAGGAGGTGGTGAGGGAGCAGAGCGGGCTCGAATGTCTGGTTCTGAGGGACAGAGAGGCGGAGGGGACGGTGGTGATGGAGAAGGAGGGGTTGAGGGAGTGTAGAGAAGAAGGTGAGGAGTTTGCTGATGAGGAGGAGGGGTTGGATAGGTGCAGGACTAGAGTGCCTAGTGTGAGGATGAGGATGAGGCATGTGCCGAGATTGGAGCTCAAAGGCGGGCTTTGGGTCGAGGGTGCGACGCTCGTGGTGGTCCGGCCCAGTTTGGGAGGCGGCGGTGGCGACATGGCGGTGGAGGATGCGGAATTGGCGTTGAGGGCATTTGGGAATGGTTTGTATGGGGAGGTTGCGCAGAAGCTGCTCAAGGCCAGAAGCTATTTGCTGGAAATGAACTCATTCTGA

Protein Analysis

327

Amino Acids

36.25

Weight (kDa)

6.56

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 4 - 41 1.1e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 472
AasI GACNNNNNNGTC 1 cut(s) 134
Acc16I TGCGCA 1 cut(s) 933
Acc36I ACCTGC 2 cut(s) 446, 472
AccBSI CCGCTC 1 cut(s) 609
AccI GTMKAC 1 cut(s) 147
AccII CGCG 4 cut(s) 153, 339, 353, 560
AccIII TCCGGA 1 cut(s) 432
AclWI GGATC 5 cut(s) 28, 292, 305, 313, 453
AcoI YGGCCR 1 cut(s) 489
AcuI CTGAAG 2 cut(s) 542, 605
AcyI GRCGYC 1 cut(s) 563
AfiI CCNNNNNNNGG 5 cut(s) 58, 294, 388, 420, 848
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 2 cut(s) 51, 447
AluBI AGCT 4 cut(s) 497, 793, 940, 957
AluI AGCT 4 cut(s) 497, 793, 940, 957
Alw21I GWGCWC 2 cut(s) 553, 795
Alw26I GTCTC 4 cut(s) 61, 240, 256, 464
AlwI GGATC 5 cut(s) 28, 292, 305, 313, 453
AlwNI CAGNNNCTG 1 cut(s) 940
Ama87I CYCGRG 1 cut(s) 383
Aor13HI TCCGGA 1 cut(s) 432
AoxI GGCC 3 cut(s) 489, 839, 948
ApeKI GCWGC 3 cut(s) 81, 327, 940
Asp700I GAANNNNTTC 2 cut(s) 101, 977
AspLEI GCGC 2 cut(s) 348, 934
AspS9I GGNCC 6 cut(s) 25, 291, 393, 435, 835, 840
AsuC2I CCSGG 3 cut(s) 29, 289, 295
AsuHPI GGTGA 6 cut(s) 43, 133, 496, 607, 670, 710
AsuII TTCGAA 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 383
AvaII GGWCC 5 cut(s) 25, 291, 393, 435, 835
BamHI GGATCC 1 cut(s) 297
BanII GRGCYC 3 cut(s) 504, 615, 795
BauI CACGAG 1 cut(s) 827
Bbv12I GWGCWC 2 cut(s) 553, 795
BbvI GCAGC 3 cut(s) 68, 314, 927
BccI CCATC 1 cut(s) 655
BceAI ACGGC 3 cut(s) 22, 74, 504
BciT130I CCWGG 2 cut(s) 53, 449
BcnI CCSGG 3 cut(s) 29, 289, 295
BcoDI GTCTC 4 cut(s) 61, 240, 256, 464
BfaI CTAG 3 cut(s) 134, 744, 753
BfoI RGCGCY 1 cut(s) 349
BfuAI ACCTGC 2 cut(s) 446, 472
BglII AGATCT 1 cut(s) 42
BisI GCNGC 5 cut(s) 82, 328, 561, 856, 941
BlpI GCTNAGC 1 cut(s) 498
BlsI GCNGC 5 cut(s) 83, 329, 562, 857, 942
Bme1390I CCNGG 5 cut(s) 29, 53, 289, 295, 449
Bme18I GGWCC 5 cut(s) 25, 291, 393, 435, 835
BmeT110I CYCGRG 1 cut(s) 383
BmgT120I GGNCC 6 cut(s) 25, 291, 393, 435, 835, 840
BmiI GGNNCC 5 cut(s) 27, 293, 299, 394, 455
BmrFI CCNGG 5 cut(s) 29, 53, 289, 295, 449
BmrI ACTGGG 1 cut(s) 837
BmsI GCATC 1 cut(s) 871
BmuI ACTGGG 1 cut(s) 837
BoxI GACNNNNGTC 1 cut(s) 440
BpmI CTGGAG 1 cut(s) 23
Bpu1102I GCTNAGC 1 cut(s) 498
Bpu14I TTCGAA 1 cut(s) 95
BpuEI CTTGAG 3 cut(s) 215, 386, 929
BpuMI CCSGG 3 cut(s) 29, 289, 295
BsaHI GRCGYC 1 cut(s) 563
BsaI GGTCTC 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 448
BsaWI WCCGGW 1 cut(s) 432
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 294, 388, 420, 848
Bse118I RCCGGY 1 cut(s) 512
Bse1I ACTGG 1 cut(s) 843
BseAI TCCGGA 1 cut(s) 432
BseBI CCWGG 2 cut(s) 53, 449
BseDI CCNNGG 1 cut(s) 448
BseGI GGATG 5 cut(s) 225, 444, 768, 774, 886
BseLI CCNNNNNNNGG 5 cut(s) 58, 294, 388, 420, 848
BseMII CTCAG 3 cut(s) 195, 489, 620
BseNI ACTGG 1 cut(s) 843
BseRI GAGGAG 5 cut(s) 151, 194, 716, 731, 734
BseX3I CGGCCG 1 cut(s) 489
BseXI GCAGC 3 cut(s) 68, 314, 927
BsgI GTGCAG 1 cut(s) 757
Bsh1236I CGCG 4 cut(s) 153, 339, 353, 560
Bsh1285I CGRYCG 4 cut(s) 16, 151, 357, 492
BshFI GGCC 3 cut(s) 491, 841, 950
BsiEI CGRYCG 4 cut(s) 16, 151, 357, 492
BsiHKAI GWGCWC 2 cut(s) 553, 795
BsiHKCI CYCGRG 1 cut(s) 383
BsiSI CCGG 9 cut(s) 23, 29, 289, 295, 369, 433, 492, 513, 838
BslFI GGGAC 4 cut(s) 101, 406, 647, 664
BslI CCNNNNNNNGG 5 cut(s) 58, 294, 388, 420, 848
BsmAI GTCTC 4 cut(s) 61, 240, 256, 464
BsmBI CGTCTC 1 cut(s) 256
BsmFI GGGAC 4 cut(s) 101, 406, 647, 664
BsnI GGCC 3 cut(s) 491, 841, 950
Bso31I GGTCTC 1 cut(s) 61
BsoBI CYCGRG 1 cut(s) 383
Bsp119I TTCGAA 1 cut(s) 95
Bsp1286I GDGCHC 4 cut(s) 504, 553, 615, 795
Bsp13I TCCGGA 1 cut(s) 432
Bsp143I GATC 9 cut(s) 13, 33, 42, 297, 318, 354, 458, 543, 555
Bsp1720I GCTNAGC 1 cut(s) 498
Bsp68I TCGCGA 1 cut(s) 353
BspANI GGCC 3 cut(s) 491, 841, 950
BspCNI CTCAG 3 cut(s) 194, 490, 621
BspEI TCCGGA 1 cut(s) 432
BspFNI CGCG 4 cut(s) 153, 339, 353, 560
BspLI GGNNCC 5 cut(s) 27, 293, 299, 394, 455
BspMI ACCTGC 2 cut(s) 446, 472
BspPI GGATC 5 cut(s) 28, 292, 305, 313, 453
BspT104I TTCGAA 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 61
BsrBI CCGCTC 1 cut(s) 609
BsrFI RCCGGY 1 cut(s) 512
BsrI ACTGG 1 cut(s) 843
BssAI RCCGGY 1 cut(s) 512
BssECI CCNNGG 1 cut(s) 448
BssMI GATC 9 cut(s) 13, 33, 42, 297, 318, 354, 458, 543, 555
BssNI GRCGYC 1 cut(s) 563
BssSI CACGAG 1 cut(s) 827
Bst2BI CACGAG 1 cut(s) 827
Bst2UI CCWGG 2 cut(s) 53, 449
Bst4CI ACNGT 3 cut(s) 145, 397, 655
BstACI GRCGYC 1 cut(s) 563
BstAPI GCANNNNNTGC 2 cut(s) 580, 940
BstBI TTCGAA 1 cut(s) 95
BstC8I GCNNGC 4 cut(s) 514, 518, 611, 803
BstDEI CTNAG 3 cut(s) 181, 498, 629
BstENI CCTNNNNNAGG 1 cut(s) 386
BstF5I GGATG 5 cut(s) 225, 444, 768, 774, 886
BstFNI CGCG 4 cut(s) 153, 339, 353, 560
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 2 cut(s) 348, 934
BstKTI GATC 9 cut(s) 16, 36, 45, 300, 321, 357, 461, 546, 558
BstMAI GTCTC 4 cut(s) 61, 240, 256, 464
BstMBI GATC 9 cut(s) 13, 33, 42, 297, 318, 354, 458, 543, 555
BstMCI CGRYCG 4 cut(s) 16, 151, 357, 492
BstNI CCWGG 2 cut(s) 53, 449
BstNSI RCATGY 1 cut(s) 779
BstPAI GACNNNNGTC 1 cut(s) 440
BstSCI CCNGG 5 cut(s) 27, 51, 287, 293, 447
BstUI CGCG 4 cut(s) 153, 339, 353, 560
BstV1I GCAGC 3 cut(s) 68, 314, 927
BstX2I RGATCY 3 cut(s) 42, 297, 318
BstYI RGATCY 3 cut(s) 42, 297, 318
BstZI CGGCCG 1 cut(s) 489
BsuRI GGCC 3 cut(s) 491, 841, 950
BtsCI GGATG 5 cut(s) 225, 444, 768, 774, 886
BtsIMutI CAGTG 1 cut(s) 553
BtuMI TCGCGA 1 cut(s) 353
BveI ACCTGC 2 cut(s) 446, 472
Cac8I GCNNGC 4 cut(s) 514, 518, 611, 803
CaiI CAGNNNCTG 1 cut(s) 940
CfoI GCGC 2 cut(s) 348, 934
Cfr10I RCCGGY 1 cut(s) 512
Cfr13I GGNCC 6 cut(s) 25, 291, 393, 435, 835, 840
CseI GACGC 5 cut(s) 142, 328, 430, 552, 832
CsiI ACCWGGT 1 cut(s) 51
CviAII CATG 2 cut(s) 776, 868
DdeI CTNAG 3 cut(s) 181, 498, 629
DpnI GATC 9 cut(s) 15, 35, 44, 299, 320, 356, 460, 545, 557
DpnII GATC 9 cut(s) 13, 33, 42, 297, 318, 354, 458, 543, 555
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
EaeI YGGCCR 1 cut(s) 489
EagI CGGCCG 1 cut(s) 489
EciI GGCGGA 3 cut(s) 202, 368, 659
Ecl136II GAGCTC 1 cut(s) 793
EclXI CGGCCG 1 cut(s) 489
Eco24I GRGCYC 3 cut(s) 504, 615, 795
Eco31I GGTCTC 1 cut(s) 61
Eco47I GGWCC 5 cut(s) 25, 291, 393, 435, 835
Eco52I CGGCCG 1 cut(s) 489
Eco53kI GAGCTC 1 cut(s) 793
Eco57I CTGAAG 2 cut(s) 542, 605
Eco88I CYCGRG 1 cut(s) 383
EcoICRI GAGCTC 1 cut(s) 793
EcoNI CCTNNNNNAGG 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 51, 447
EcoT38I GRGCYC 3 cut(s) 504, 615, 795
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 2 cut(s) 779, 871
FaiI YATR 3 cut(s) 777, 869, 921
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FaqI GGGAC 4 cut(s) 101, 406, 647, 664
FatI CATG 2 cut(s) 775, 867
FauI CCCGC 5 cut(s) 319, 509, 522, 602, 794
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 5 cut(s) 82, 328, 561, 856, 941
FokI GGATG 5 cut(s) 212, 431, 775, 781, 893
FriOI GRGCYC 3 cut(s) 504, 615, 795
Fsp4HI GCNGC 5 cut(s) 82, 328, 561, 856, 941
FspBI CTAG 3 cut(s) 134, 744, 753
FspI TGCGCA 1 cut(s) 933
GlaI GCGC 2 cut(s) 347, 933
GluI GCNGC 5 cut(s) 82, 328, 561, 856, 941
GsuI CTGGAG 1 cut(s) 23
HaeII RGCGCY 1 cut(s) 349
HaeIII GGCC 3 cut(s) 491, 841, 950
HapII CCGG 9 cut(s) 23, 29, 289, 295, 369, 433, 492, 513, 838
HgaI GACGC 5 cut(s) 142, 328, 430, 552, 832
HhaI GCGC 2 cut(s) 348, 934
Hin1I GRCGYC 1 cut(s) 563
Hin1II CATG 2 cut(s) 779, 871
Hin6I GCGC 2 cut(s) 346, 932
HinP1I GCGC 2 cut(s) 346, 932
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 5 cut(s) 128, 167, 173, 179, 472
HpaII CCGG 9 cut(s) 23, 29, 289, 295, 369, 433, 492, 513, 838
HphI GGTGA 6 cut(s) 43, 133, 496, 607, 670, 710
Hpy166II GTNNAC 2 cut(s) 148, 540
Hpy188I TCNGA 9 cut(s) 61, 166, 172, 178, 184, 458, 555, 630, 983
Hpy188III TCNNGA 5 cut(s) 40, 352, 385, 421, 433
Hpy8I GTNNAC 2 cut(s) 148, 540
Hpy99I CGWCG 7 cut(s) 149, 191, 194, 467, 481, 568, 826
HpyAV CCTTC 6 cut(s) 226, 382, 517, 580, 661, 689
HpyCH4III ACNGT 3 cut(s) 145, 397, 655
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 1 cut(s) 738
HpyF3I CTNAG 3 cut(s) 181, 498, 629
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 563
Hsp92II CATG 2 cut(s) 779, 871
HspAI GCGC 2 cut(s) 346, 932
Kpn2I TCCGGA 1 cut(s) 432
KroI GCCGGC 1 cut(s) 512
KroNI GCCGGC 1 cut(s) 514
Kzo9I GATC 9 cut(s) 13, 33, 42, 297, 318, 354, 458, 543, 555
LmnI GCTCC 3 cut(s) 494, 601, 790
Lsp1109I GCAGC 3 cut(s) 68, 314, 927
LweI GCATC 1 cut(s) 871
MabI ACCWGGT 1 cut(s) 51
MaeI CTAG 3 cut(s) 134, 744, 753
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 484
MalI GATC 9 cut(s) 15, 35, 44, 299, 320, 356, 460, 545, 557
MbiI CCGCTC 1 cut(s) 609
MboI GATC 9 cut(s) 13, 33, 42, 297, 318, 354, 458, 543, 555
MboII GAAGA 2 cut(s) 37, 704
MflI RGATCY 3 cut(s) 42, 297, 318
MhlI GDGCHC 4 cut(s) 504, 553, 615, 795
MluCI AATT 1 cut(s) 887
MlyI GAGTC 5 cut(s) 122, 161, 167, 173, 466
MmeI TCCRAC 5 cut(s) 189, 195, 201, 222, 708
MreI CGCCGGCG 1 cut(s) 512
MroI TCCGGA 1 cut(s) 432
MroNI GCCGGC 1 cut(s) 512
MroXI GAANNNNTTC 2 cut(s) 101, 977
MslI CAYNNNNRTG 1 cut(s) 872
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 9 cut(s) 23, 29, 289, 295, 369, 433, 492, 513, 838
MspR9I CCNGG 5 cut(s) 29, 53, 289, 295, 449
MvaI CCWGG 2 cut(s) 53, 449
MvnI CGCG 4 cut(s) 153, 339, 353, 560
NaeI GCCGGC 1 cut(s) 514
NciI CCSGG 3 cut(s) 29, 289, 295
NdeII GATC 9 cut(s) 13, 33, 42, 297, 318, 354, 458, 543, 555
NgoMIV GCCGGC 1 cut(s) 512
NlaIII CATG 2 cut(s) 779, 871
NlaIV GGNNCC 5 cut(s) 27, 293, 299, 394, 455
NmeAIII GCCGAG 2 cut(s) 439, 807
NmuCI GTSAC 1 cut(s) 484
NruI TCGCGA 1 cut(s) 353
NsbI TGCGCA 1 cut(s) 933
NspI RCATGY 1 cut(s) 779
NspV TTCGAA 1 cut(s) 95
PaeR7I CTCGAG 1 cut(s) 383
PaqCI CACCTGC 1 cut(s) 472
PdiI GCCGGC 1 cut(s) 514
PdmI GAANNNNTTC 2 cut(s) 101, 977
PflFI GACNNNGTC 3 cut(s) 53, 152, 475
PkrI GCNGC 5 cut(s) 83, 329, 562, 857, 942
Ple19I CGATCG 2 cut(s) 16, 357
PleI GAGTC 5 cut(s) 122, 161, 167, 173, 466
PpsI GAGTC 5 cut(s) 122, 161, 167, 173, 466
PshAI GACNNNNGTC 1 cut(s) 440
Psp124BI GAGCTC 1 cut(s) 795
Psp6I CCWGG 2 cut(s) 51, 447
PspGI CCWGG 2 cut(s) 51, 447
PspN4I GGNNCC 5 cut(s) 27, 293, 299, 394, 455
PspPI GGNCC 6 cut(s) 25, 291, 393, 435, 835, 840
PstNI CAGNNNCTG 1 cut(s) 940
PsuI RGATCY 3 cut(s) 42, 297, 318
PsyI GACNNNGTC 3 cut(s) 53, 152, 475
PvuI CGATCG 2 cut(s) 16, 357
RruI TCGCGA 1 cut(s) 353
RseI CAYNNNNRTG 1 cut(s) 872
SacI GAGCTC 1 cut(s) 795
SalI GTCGAC 1 cut(s) 146
SatI GCNGC 5 cut(s) 82, 328, 561, 856, 941
Sau3AI GATC 9 cut(s) 13, 33, 42, 297, 318, 354, 458, 543, 555
Sau96I GGNCC 6 cut(s) 25, 291, 393, 435, 835, 840
SchI GAGTC 5 cut(s) 122, 161, 167, 173, 466
ScrFI CCNGG 5 cut(s) 29, 53, 289, 295, 449
SduI GDGCHC 4 cut(s) 504, 553, 615, 795
SexAI ACCWGGT 1 cut(s) 51
SfaNI GCATC 1 cut(s) 871
Sfr274I CTCGAG 1 cut(s) 383
SfuI TTCGAA 1 cut(s) 95
SgrAI CRCCGGYG 1 cut(s) 512
SinI GGWCC 5 cut(s) 25, 291, 393, 435, 835
SlaI CTCGAG 1 cut(s) 383
SmiMI CAYNNNNRTG 1 cut(s) 872
SmlI CTYRAG 4 cut(s) 230, 383, 401, 944
SmoI CTYRAG 4 cut(s) 230, 383, 401, 944
Sse9I AATT 1 cut(s) 887
SspMI CTAG 3 cut(s) 134, 744, 753
SstI GAGCTC 1 cut(s) 795
StyD4I CCNGG 5 cut(s) 27, 51, 287, 293, 447
TaaI ACNGT 3 cut(s) 145, 397, 655
TaiI ACGT 1 cut(s) 195
TaqI TCGA 9 cut(s) 12, 16, 48, 95, 147, 357, 384, 615, 813
TasI AATT 1 cut(s) 887
TauI GCSGC 2 cut(s) 563, 858
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 3 cut(s) 81, 327, 940
Tsp45I GTSAC 1 cut(s) 484
TspGWI ACGGA 2 cut(s) 451, 465
TspRI CASTG 1 cut(s) 553
Tth111I GACNNNGTC 3 cut(s) 53, 152, 475
VpaK11BI GGWCC 5 cut(s) 25, 291, 393, 435, 835
XagI CCTNNNNNAGG 1 cut(s) 386
XceI RCATGY 1 cut(s) 779
XhoI CTCGAG 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 147
XmnI GAANNNNTTC 2 cut(s) 101, 977
XspI CTAG 3 cut(s) 134, 744, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.