Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004058.1

Orthogroup ID

OG0009029

Physical Location & Seq

Genomic Coordinates Forward (+)

90056 .. 91830

Gene Structure 1775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004058.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atggaaatagacggctttgatcggctcccggaccccgtgatcctccagatcttcgacctggtctcggtcaccaagaccctcattcactgcctcgccatttcgaaaccctttaactccctcgtcccccacatcgactccctagtcctcatcgtcaaccgcctcatctcctcttcctcctccgacgacaacgtttccaacctccttgcctctgcacttttcgtcggtgtcagtgatgcgatcgatacagggttggggaaacgatgtgccgttgtcccagacgagctcgtcgttgatgggggggggggcacgttgggatgtagggtagaatgggttgcagtgttcagagcgtcgtctcctccgactcctactcagaacgactggcgacggtggcagagtgaagcccgaaagcttctcgggttttccgaattgatatggaggagaagaaaggagatggagaaaacagaggaaaagaaagaagaaatagaagaaatggggaaggaacaattgagattttggtctattggtatttgcaacttaagaagaaaaattaatagtaagaaactttgtggctgggaatctggaatgaaggaggaggagagagagagatacttgcagaggctgcaacacgagaaggaagatgacagaatggtcaaagaaaaagtggatcagaatcctgacacctccatcattgaaatcatcgaagcacctaggcctcatcaaaaagcccgcggatcaagtgggccgattgaggcccgccggccagcagggccaaaagacctgcccggcccgtcaaaaagccctcctcggtgggccgatggaggcccaccaaaaagtctgcaaaaacccagcccggcctgcctaaaggccgctaggctaggccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010540 GO:0010541 GO:0010817 GO:0023052 GO:0030054 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

294

Amino Acids

32.93

Weight (kDa)

8.47

Isoelectric Point (pI)

66.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22220 AT1G78100
fragaria_vesca	FvH4_5g37750
malus_domestica	MD15G1366300.v1.1
prunus_persica	Prupe.1G514000_v2.0.a1
pyrus_communis	pycom15g32850
rosa_chinensis	RchiOBHm_Chr7g0239491
rosa_laevigata	RLG00000000753 RLG00000018504
rosa_multiflora	Rmu_co8072600.1_g000001 Rmu_sc0000381.1_g000021 Rmu_sc0000760.1_g000010 Rmu_sc0004058.1_g000019
rosa_roxburghii	Rroxscaffold_1G00005340 Rroxscaffold_3G00220890
rosa_rugosa	Rorug07G0328300.1
rosa_samantha	Rh2BG504200 Rh6AG395700 Rh7BG454700 Rh7CG499800 Rh7DG467900
rosa_wichuraiana	Rw7G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	140, 284, 647
Acc36I	ACCTGC	1 cut(s)	786
AccII	CGCG	1 cut(s)	729
AciI	CCGC	5 cut(s)	157, 727, 729, 754, 867
AclI	AACGTT	1 cut(s)	189
AclWI	GGATC	3 cut(s)	34, 672, 739
AcoI	YGGCCR	1 cut(s)	758
AfiI	CCNNNNNNNGG	1 cut(s)	64
AflII	CTTAAG	1 cut(s)	535
AgsI	TTSAA	1 cut(s)	692
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	2 cut(s)	283, 409
AluI	AGCT	2 cut(s)	283, 409
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	2 cut(s)	67, 357
AlwI	GGATC	3 cut(s)	34, 672, 739
AlwNI	CAGNNNCTG	1 cut(s)	619
Ama87I	CYCGRG	1 cut(s)	413
ApeKI	GCWGC	1 cut(s)	619
AseI	ATTAAT	1 cut(s)	549
AspA2I	CCTAGG	1 cut(s)	707
AspS9I	GGNCC	7 cut(s)	31, 740, 751, 767, 785, 810, 821
AsuC2I	CCSGG	3 cut(s)	29, 783, 851
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	31
AvrII	CCTAGG	1 cut(s)	707
BaeGI	GKGCMC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	285
BauI	CACGAG	1 cut(s)	626
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	606
BccI	CCATC	4 cut(s)	287, 445, 692, 809
BceAI	ACGGC	2 cut(s)	28, 251
BciT130I	CCWGG	1 cut(s)	59
BcnI	CCSGG	3 cut(s)	29, 783, 851
BcoDI	GTCTC	2 cut(s)	67, 357
BfaI	CTAG	4 cut(s)	140, 708, 870, 875
BfrI	CTTAAG	1 cut(s)	535
BfuAI	ACCTGC	1 cut(s)	786
BglI	GCCNNNNNGGC	1 cut(s)	766
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	2 cut(s)	620, 867
BlnI	CCTAGG	1 cut(s)	707
BlsI	GCNGC	2 cut(s)	621, 868
Bme1390I	CCNGG	4 cut(s)	29, 59, 783, 851
Bme18I	GGWCC	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	7 cut(s)	31, 740, 751, 767, 785, 810, 821
BmiI	GGNNCC	2 cut(s)	26, 33
BmrFI	CCNGG	4 cut(s)	29, 59, 783, 851
BmsI	GCATC	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	101
BpuMI	CCSGG	3 cut(s)	29, 783, 851
Bsa29I	ATCGAT	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	669
BsaI	GGTCTC	1 cut(s)	67
BsaJI	CCNNGG	3 cut(s)	707, 727, 803
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse118I	RCCGGY	1 cut(s)	756
Bse1I	ACTGG	2 cut(s)	383, 880
Bse8I	GATNNNNATC	1 cut(s)	669
BseBI	CCWGG	1 cut(s)	59
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	3 cut(s)	707, 727, 803
BseGI	GGATG	1 cut(s)	320
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	2 cut(s)	383, 880
BseRI	GAGGAG	7 cut(s)	157, 166, 345, 451, 605, 608, 792
BseSI	GKGCMC	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	606
BseYI	CCCAGC	2 cut(s)	570, 845
BsgI	GTGCAG	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	729
Bsh1285I	CGRYCG	1 cut(s)	240
BshVI	ATCGAT	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	4 cut(s)	29, 757, 783, 851
BslFI	GGGAC	2 cut(s)	107, 257
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	2 cut(s)	67, 357
BsmBI	CGTCTC	1 cut(s)	357
BsmFI	GGGAC	2 cut(s)	107, 257
Bso31I	GGTCTC	1 cut(s)	67
BsoBI	CYCGRG	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	101
Bsp1286I	GDGCHC	2 cut(s)	285, 308
Bsp143I	GATC	6 cut(s)	19, 39, 48, 237, 664, 731
BspACI	CCGC	5 cut(s)	157, 727, 729, 754, 867
BspCNI	CTCAG	1 cut(s)	382
BspDI	ATCGAT	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	729
BspLI	GGNNCC	2 cut(s)	26, 33
BspMI	ACCTGC	1 cut(s)	786
BspPI	GGATC	3 cut(s)	34, 672, 739
BspT104I	TTCGAA	1 cut(s)	101
BspTI	CTTAAG	1 cut(s)	535
BspTNI	GGTCTC	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	756
BsrI	ACTGG	2 cut(s)	383, 880
BssAI	RCCGGY	1 cut(s)	756
BssECI	CCNNGG	3 cut(s)	707, 727, 803
BssMI	GATC	6 cut(s)	19, 39, 48, 237, 664, 731
BssSI	CACGAG	1 cut(s)	626
BssT1I	CCWWGG	1 cut(s)	707
Bst2BI	CACGAG	1 cut(s)	626
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	387
Bst6I	CTCTTC	1 cut(s)	175
BstAFI	CTTAAG	1 cut(s)	535
BstAPI	GCANNNNNTGC	1 cut(s)	619
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	5 cut(s)	727, 754, 758, 762, 856
BstDEI	CTNAG	1 cut(s)	369
BstDSI	CCRYGG	1 cut(s)	727
BstEII	GGTNACC	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	320
BstFNI	CGCG	1 cut(s)	729
BstKTI	GATC	6 cut(s)	22, 42, 51, 240, 667, 734
BstMAI	GTCTC	2 cut(s)	67, 357
BstMBI	GATC	6 cut(s)	19, 39, 48, 237, 664, 731
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	4 cut(s)	388, 619, 766, 855
BstNI	CCWGG	1 cut(s)	59
BstPI	GGTNACC	1 cut(s)	67
BstSCI	CCNGG	4 cut(s)	27, 57, 781, 849
BstSLI	GKGCMC	1 cut(s)	308
BstUI	CGCG	1 cut(s)	729
BstV1I	GCAGC	1 cut(s)	606
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	727
BtsCI	GGATG	1 cut(s)	320
BtsI	GCAGTG	2 cut(s)	85, 342
BtsIMutI	CAGTG	3 cut(s)	85, 235, 342
BveI	ACCTGC	1 cut(s)	786
Cac8I	GCNNGC	5 cut(s)	727, 754, 758, 762, 856
CaiI	CAGNNNCTG	1 cut(s)	619
Cfr10I	RCCGGY	1 cut(s)	756
Cfr13I	GGNCC	7 cut(s)	31, 740, 751, 767, 785, 810, 821
Cfr42I	CCGCGG	1 cut(s)	730
ClaI	ATCGAT	1 cut(s)	240
CseI	GACGC	1 cut(s)	336
CsiI	ACCWGGT	1 cut(s)	57
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	6 cut(s)	21, 41, 50, 239, 666, 733
DpnII	GATC	6 cut(s)	19, 39, 48, 237, 664, 731
DrdI	GACNNNNNNGTC	3 cut(s)	140, 284, 647
DseDI	GACNNNNNNGTC	3 cut(s)	140, 284, 647
EaeI	YGGCCR	1 cut(s)	758
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	707
Eco147I	AGGCCT	1 cut(s)	712
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	283
Eco88I	CYCGRG	1 cut(s)	413
Eco91I	GGTNACC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	707
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	707
Esp3I	CGTCTC	1 cut(s)	357
FaiI	YATR	1 cut(s)	433
FaqI	GGGAC	2 cut(s)	107, 257
FauI	CCCGC	2 cut(s)	734, 761
Fnu4HI	GCNGC	2 cut(s)	620, 867
FokI	GGATG	1 cut(s)	327
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	2 cut(s)	620, 867
FspBI	CTAG	4 cut(s)	140, 708, 870, 875
GluI	GCNGC	2 cut(s)	620, 867
GsaI	CCCAGC	2 cut(s)	574, 849
GsuI	CTGGAG	1 cut(s)	29
HapII	CCGG	4 cut(s)	29, 757, 783, 851
HgaI	GACGC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	4 cut(s)	134, 361, 575, 670
HpaII	CCGG	4 cut(s)	29, 757, 783, 851
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	6 cut(s)	181, 344, 360, 372, 424, 669
Hpy188III	TCNNGA	3 cut(s)	46, 579, 674
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	5 cut(s)	185, 224, 290, 352, 387
HpyAV	CCTTC	3 cut(s)	490, 580, 625
HpyCH4III	ACNGT	1 cut(s)	387
HpyCH4IV	ACGT	2 cut(s)	189, 308
HpyCH4V	TGCA	6 cut(s)	212, 335, 531, 613, 622, 838
HpyF10VI	GCNNNNNNNGC	4 cut(s)	388, 619, 766, 855
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	2 cut(s)	189, 308
KroI	GCCGGC	1 cut(s)	756
KroNI	GCCGGC	1 cut(s)	758
KspI	CCGCGG	1 cut(s)	730
Kzo9I	GATC	6 cut(s)	19, 39, 48, 237, 664, 731
LmnI	GCTCC	1 cut(s)	30
Lsp1109I	GCAGC	1 cut(s)	606
LweI	GCATC	1 cut(s)	223
MabI	ACCWGGT	1 cut(s)	57
MaeI	CTAG	4 cut(s)	140, 708, 870, 875
MaeII	ACGT	2 cut(s)	189, 308
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	6 cut(s)	21, 41, 50, 239, 666, 733
MboI	GATC	6 cut(s)	19, 39, 48, 237, 664, 731
MboII	GAAGA	7 cut(s)	43, 162, 453, 488, 497, 552, 647
MfeI	CAATTG	1 cut(s)	503
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	2 cut(s)	285, 308
MluCI	AATT	3 cut(s)	425, 503, 546
MlyI	GAGTC	2 cut(s)	128, 355
MmeI	TCCRAC	3 cut(s)	204, 219, 383
MroNI	GCCGGC	1 cut(s)	756
MseI	TTAA	3 cut(s)	111, 536, 549
MspA1I	CMGCKG	1 cut(s)	729
MspCI	CTTAAG	1 cut(s)	535
MspI	CCGG	4 cut(s)	29, 757, 783, 851
MspR9I	CCNGG	4 cut(s)	29, 59, 783, 851
MunI	CAATTG	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	729
MwoI	GCNNNNNNNGC	4 cut(s)	388, 619, 766, 855
NaeI	GCCGGC	1 cut(s)	758
NciI	CCSGG	3 cut(s)	29, 783, 851
NdeII	GATC	6 cut(s)	19, 39, 48, 237, 664, 731
NgoMIV	GCCGGC	1 cut(s)	756
NlaIV	GGNNCC	2 cut(s)	26, 33
NmuCI	GTSAC	1 cut(s)	67
NspV	TTCGAA	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	712
PcsI	WCGNNNNNNNCGW	3 cut(s)	285, 356, 420
PdiI	GCCGGC	1 cut(s)	758
PfeI	GAWTC	2 cut(s)	575, 670
PflFI	GACNNNGTC	1 cut(s)	59
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	621, 868
Ple19I	CGATCG	1 cut(s)	240
PleI	GAGTC	2 cut(s)	128, 355
PpsI	GAGTC	2 cut(s)	128, 355
PshBI	ATTAAT	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	285
Psp1406I	AACGTT	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	57
PspEI	GGTNACC	1 cut(s)	67
PspFI	CCCAGC	2 cut(s)	570, 845
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	26, 33
PspPI	GGNCC	7 cut(s)	31, 740, 751, 767, 785, 810, 821
PstNI	CAGNNNCTG	1 cut(s)	619
PsuI	RGATCY	1 cut(s)	48
PsyI	GACNNNGTC	1 cut(s)	59
PvuI	CGATCG	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	285
SacII	CCGCGG	1 cut(s)	730
SaqAI	TTAA	3 cut(s)	111, 536, 549
SatI	GCNGC	2 cut(s)	620, 867
Sau3AI	GATC	6 cut(s)	19, 39, 48, 237, 664, 731
Sau96I	GGNCC	7 cut(s)	31, 740, 751, 767, 785, 810, 821
SchI	GAGTC	2 cut(s)	128, 355
ScrFI	CCNGG	4 cut(s)	29, 59, 783, 851
SduI	GDGCHC	2 cut(s)	285, 308
SetI	ASST	9 cut(s)	60, 192, 201, 285, 311, 411, 683, 709, 780
SexAI	ACCWGGT	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	223
SfiI	GGCCNNNNNGGCC	1 cut(s)	766
Sfr303I	CCGCGG	1 cut(s)	730
SfuI	TTCGAA	1 cut(s)	101
SgrBI	CCGCGG	1 cut(s)	730
SinI	GGWCC	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	535
SmoI	CTYRAG	1 cut(s)	535
Sse9I	AATT	3 cut(s)	425, 503, 546
SseBI	AGGCCT	1 cut(s)	712
SsiI	CCGC	5 cut(s)	157, 727, 729, 754, 867
SspMI	CTAG	4 cut(s)	140, 708, 870, 875
SstI	GAGCTC	1 cut(s)	285
StuI	AGGCCT	1 cut(s)	712
StyD4I	CCNGG	4 cut(s)	27, 57, 781, 849
StyI	CCWWGG	1 cut(s)	707
TaaI	ACNGT	1 cut(s)	387
TaiI	ACGT	2 cut(s)	192, 311
TaqI	TCGA	5 cut(s)	54, 101, 132, 240, 699
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	3 cut(s)	425, 503, 546
TauI	GCSGC	1 cut(s)	869
TfiI	GAWTC	2 cut(s)	575, 670
Tru1I	TTAA	3 cut(s)	111, 536, 549
Tru9I	TTAA	3 cut(s)	111, 536, 549
TscAI	CASTG	3 cut(s)	92, 235, 342
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	1 cut(s)	619
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	599
TspRI	CASTG	3 cut(s)	92, 235, 342
Tth111I	GACNNNGTC	1 cut(s)	59
Vha464I	CTTAAG	1 cut(s)	535
VpaK11BI	GGWCC	1 cut(s)	31
VspI	ATTAAT	1 cut(s)	549
XmaJI	CCTAGG	1 cut(s)	707
XspI	CTAG	4 cut(s)	140, 708, 870, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.