RLG00000000753

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009029
Physical Location & Seq
Forward (+)
4964251 .. 4965240
990 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000753

Sequence Viewer

Length: 990 bp
ATGGAAGTGGACGGCTTCGATCGACTGCCGGACCCGGTGATCCTCCAGATCTTCGACCTGGTCTCGGACACCAAGACCCTCATTCGCTGCCTCGCCGTTTCGAAACGCTTCAACTCCCTCGTCCCCCACACCGACTCCCTAGTCCTCACCGTCGACCGCGTCATCTCCTCCGACTCCGACTCCGACTCAGACGACGACGTTTCCAACCTCCTCGCCTCCGCCTTCCGCTACATCATCAAGTCTCTCCACAGCCTCGTCTGCCCCAAGCCCAACAACAACAACAACCCGACCCGGACCCGGATCCCCAACTGCCCCACCCAGATCCTCCGCTGTTTCCACCGCGTCAAGCGCCTCGCGATCGACCTCCCCTCCGGCGACCTCCGCCTCGAGAAGGGGACCGTTCTCAAGTGGAGAGCCGAGTTCGGGAAAACCCTCCGGACCTGCGTCATCCTAGGGTTCCGATCCGTCGCGGAGTCTCCTTCGCCGGTGACGGCCGGAGCTGAGCCCGACTTCGCCGGCGGGCTGAAGGTGCGGGTGGTGTGGACGATCAGTGCTCTGATCGCGGCGTCGGCGAGGCACTATTTGCTGAAGGAGGTGGTGAGGGAGCAGAGCGGGCTCGAATGTCTGGTTCTGAGGGACAGAGAGGCGGAGGGGACGGTGGTGATGGAGAAGGAGGGGTTGAAGGAGTGTAGAGAAGAAGGTGAGGAGTTTGTTGATGAGGAGGAGGGGTTGGATAGGTGCAGGACTAGAGTGCCTAGTGTGAGGATGAGGATGAGGCATGTGCCGAGATTGGAGCTCAAAGGCGGGCTTTGGGTCGAGGGTGCGACGCTCGTGGTGGTCCGGCCCAGTTTGGGAGGCGGCGGCGGCGGCGACATGGCGGTGGAGGATGGGGAATTGGCGTTGAGGGCATTTGGGAATGGTTTGTATGGGGAGGTTGCGCTTAAGCTGCTCAAGGCCAGAAGCTATTTGCTGGAAATGAACTCATTCTGA

Protein Analysis

330

Amino Acids

36.4

Weight (kDa)

6.28

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 6 - 43 1.1e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
Acc36I ACCTGC 1 cut(s) 449
AccBSI CCGCTC 1 cut(s) 612
AccI GTMKAC 1 cut(s) 153
AccII CGCG 5 cut(s) 159, 342, 356, 470, 563
AccIII TCCGGA 1 cut(s) 435
AclWI GGATC 5 cut(s) 34, 295, 308, 316, 456
AcoI YGGCCR 1 cut(s) 492
AcuI CTGAAG 2 cut(s) 545, 608
AcyI GRCGYC 1 cut(s) 566
AfiI CCNNNNNNNGG 5 cut(s) 64, 297, 391, 423, 851
AflII CTTAAG 1 cut(s) 941
AgsI TTSAA 2 cut(s) 112, 682
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 4 cut(s) 500, 796, 946, 963
AluI AGCT 4 cut(s) 500, 796, 946, 963
Alw21I GWGCWC 2 cut(s) 556, 798
Alw26I GTCTC 3 cut(s) 67, 246, 480
AlwI GGATC 5 cut(s) 34, 295, 308, 316, 456
Ama87I CYCGRG 1 cut(s) 386
Aor13HI TCCGGA 1 cut(s) 435
AoxI GGCC 3 cut(s) 492, 842, 954
ApeKI GCWGC 2 cut(s) 87, 946
Asp700I GAANNNNTTC 2 cut(s) 107, 983
AspA2I CCTAGG 1 cut(s) 451
AspLEI GCGC 2 cut(s) 351, 940
AspS9I GGNCC 6 cut(s) 31, 294, 396, 438, 838, 843
AsuC2I CCSGG 3 cut(s) 35, 292, 298
AsuHPI GGTGA 6 cut(s) 49, 139, 499, 610, 673, 713
AsuII TTCGAA 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 386
AvaII GGWCC 5 cut(s) 31, 294, 396, 438, 838
AvrII CCTAGG 1 cut(s) 451
BamHI GGATCC 1 cut(s) 300
BanII GRGCYC 3 cut(s) 507, 618, 798
BauI CACGAG 1 cut(s) 830
Bbv12I GWGCWC 2 cut(s) 556, 798
BbvI GCAGC 2 cut(s) 74, 933
BccI CCATC 2 cut(s) 658, 881
BceAI ACGGC 3 cut(s) 28, 80, 507
BciT130I CCWGG 1 cut(s) 59
BcnI CCSGG 3 cut(s) 35, 292, 298
BcoDI GTCTC 3 cut(s) 67, 246, 480
BfaI CTAG 4 cut(s) 140, 452, 747, 756
BfoI RGCGCY 1 cut(s) 352
BfrI CTTAAG 1 cut(s) 941
BfuAI ACCTGC 1 cut(s) 449
BglII AGATCT 1 cut(s) 48
BisI GCNGC 7 cut(s) 88, 564, 859, 862, 865, 868, 947
BlnI CCTAGG 1 cut(s) 451
BlpI GCTNAGC 1 cut(s) 501
BlsI GCNGC 7 cut(s) 89, 565, 860, 863, 866, 869, 948
Bme1390I CCNGG 4 cut(s) 35, 59, 292, 298
Bme18I GGWCC 5 cut(s) 31, 294, 396, 438, 838
BmeT110I CYCGRG 1 cut(s) 386
BmgT120I GGNCC 6 cut(s) 31, 294, 396, 438, 838, 843
BmiI GGNNCC 5 cut(s) 33, 296, 302, 397, 458
BmrFI CCNGG 4 cut(s) 35, 59, 292, 298
BmrI ACTGGG 1 cut(s) 840
BmuI ACTGGG 1 cut(s) 840
BoxI GACNNNNGTC 1 cut(s) 443
BpmI CTGGAG 1 cut(s) 29
Bpu1102I GCTNAGC 1 cut(s) 501
Bpu14I TTCGAA 1 cut(s) 101
BpuEI CTTGAG 2 cut(s) 389, 935
BpuMI CCSGG 3 cut(s) 35, 292, 298
BsaHI GRCGYC 1 cut(s) 566
BsaI GGTCTC 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 451
BsaWI WCCGGW 1 cut(s) 435
BsaXI ACNNNNNCTCC 8 cut(s) 119, 149, 164, 194, 353, 383, 713, 743
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 297, 391, 423, 851
Bse118I RCCGGY 2 cut(s) 484, 515
Bse1I ACTGG 1 cut(s) 846
BseAI TCCGGA 1 cut(s) 435
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 4 cut(s) 447, 771, 777, 892
BseLI CCNNNNNNNGG 5 cut(s) 64, 297, 391, 423, 851
BseMII CTCAG 3 cut(s) 201, 492, 623
BseNI ACTGG 1 cut(s) 846
BseRI GAGGAG 5 cut(s) 157, 200, 719, 734, 737
BseX3I CGGCCG 1 cut(s) 492
BseXI GCAGC 2 cut(s) 74, 933
BsgI GTGCAG 1 cut(s) 760
Bsh1236I CGCG 5 cut(s) 159, 342, 356, 470, 563
Bsh1285I CGRYCG 4 cut(s) 22, 157, 360, 495
BshFI GGCC 3 cut(s) 494, 844, 956
BsiEI CGRYCG 4 cut(s) 22, 157, 360, 495
BsiHKAI GWGCWC 2 cut(s) 556, 798
BsiHKCI CYCGRG 1 cut(s) 386
BslFI GGGAC 4 cut(s) 107, 409, 650, 667
BslI CCNNNNNNNGG 5 cut(s) 64, 297, 391, 423, 851
BsmAI GTCTC 3 cut(s) 67, 246, 480
BsmFI GGGAC 4 cut(s) 107, 409, 650, 667
BsnI GGCC 3 cut(s) 494, 844, 956
Bso31I GGTCTC 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 386
Bsp119I TTCGAA 1 cut(s) 101
Bsp1286I GDGCHC 4 cut(s) 507, 556, 618, 798
Bsp13I TCCGGA 1 cut(s) 435
Bsp143I GATC 9 cut(s) 19, 39, 48, 300, 321, 357, 461, 546, 558
Bsp1720I GCTNAGC 1 cut(s) 501
Bsp68I TCGCGA 1 cut(s) 356
BspANI GGCC 3 cut(s) 494, 844, 956
BspCNI CTCAG 3 cut(s) 200, 493, 624
BspEI TCCGGA 1 cut(s) 435
BspFNI CGCG 5 cut(s) 159, 342, 356, 470, 563
BspLI GGNNCC 5 cut(s) 33, 296, 302, 397, 458
BspMI ACCTGC 1 cut(s) 449
BspPI GGATC 5 cut(s) 34, 295, 308, 316, 456
BspT104I TTCGAA 1 cut(s) 101
BspTI CTTAAG 1 cut(s) 941
BspTNI GGTCTC 1 cut(s) 67
BsrBI CCGCTC 1 cut(s) 612
BsrFI RCCGGY 2 cut(s) 484, 515
BsrI ACTGG 1 cut(s) 846
BssAI RCCGGY 2 cut(s) 484, 515
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 9 cut(s) 19, 39, 48, 300, 321, 357, 461, 546, 558
BssNI GRCGYC 1 cut(s) 566
BssSI CACGAG 1 cut(s) 830
BssT1I CCWWGG 1 cut(s) 451
Bst2BI CACGAG 1 cut(s) 830
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 3 cut(s) 151, 400, 658
BstACI GRCGYC 1 cut(s) 566
BstAFI CTTAAG 1 cut(s) 941
BstAPI GCANNNNNTGC 1 cut(s) 583
BstBI TTCGAA 1 cut(s) 101
BstC8I GCNNGC 4 cut(s) 517, 521, 614, 806
BstDEI CTNAG 3 cut(s) 187, 501, 632
BstENI CCTNNNNNAGG 1 cut(s) 389
BstF5I GGATG 4 cut(s) 447, 771, 777, 892
BstFNI CGCG 5 cut(s) 159, 342, 356, 470, 563
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 2 cut(s) 351, 940
BstKTI GATC 9 cut(s) 22, 42, 51, 303, 324, 360, 464, 549, 561
BstMAI GTCTC 3 cut(s) 67, 246, 480
BstMBI GATC 9 cut(s) 19, 39, 48, 300, 321, 357, 461, 546, 558
BstMCI CGRYCG 4 cut(s) 22, 157, 360, 495
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 782
BstPAI GACNNNNGTC 1 cut(s) 443
BstSCI CCNGG 4 cut(s) 33, 57, 290, 296
BstUI CGCG 5 cut(s) 159, 342, 356, 470, 563
BstV1I GCAGC 2 cut(s) 74, 933
BstX2I RGATCY 3 cut(s) 48, 300, 321
BstYI RGATCY 3 cut(s) 48, 300, 321
BstZI CGGCCG 1 cut(s) 492
BsuRI GGCC 3 cut(s) 494, 844, 956
BtsCI GGATG 4 cut(s) 447, 771, 777, 892
BtsIMutI CAGTG 1 cut(s) 556
BtuMI TCGCGA 1 cut(s) 356
BveI ACCTGC 1 cut(s) 449
Cac8I GCNNGC 4 cut(s) 517, 521, 614, 806
CfoI GCGC 2 cut(s) 351, 940
Cfr10I RCCGGY 2 cut(s) 484, 515
Cfr13I GGNCC 6 cut(s) 31, 294, 396, 438, 838, 843
CseI GACGC 5 cut(s) 148, 331, 433, 555, 835
CsiI ACCWGGT 1 cut(s) 57
CviAII CATG 2 cut(s) 779, 874
DdeI CTNAG 3 cut(s) 187, 501, 632
DpnI GATC 9 cut(s) 21, 41, 50, 302, 323, 359, 463, 548, 560
DpnII GATC 9 cut(s) 19, 39, 48, 300, 321, 357, 461, 546, 558
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 492
EagI CGGCCG 1 cut(s) 492
EciI GGCGGA 3 cut(s) 208, 371, 662
Ecl136II GAGCTC 1 cut(s) 796
EclXI CGGCCG 1 cut(s) 492
Eco130I CCWWGG 1 cut(s) 451
Eco24I GRGCYC 3 cut(s) 507, 618, 798
Eco31I GGTCTC 1 cut(s) 67
Eco47I GGWCC 5 cut(s) 31, 294, 396, 438, 838
Eco52I CGGCCG 1 cut(s) 492
Eco53kI GAGCTC 1 cut(s) 796
Eco57I CTGAAG 2 cut(s) 545, 608
Eco88I CYCGRG 1 cut(s) 386
EcoICRI GAGCTC 1 cut(s) 796
EcoNI CCTNNNNNAGG 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 451
EcoT38I GRGCYC 3 cut(s) 507, 618, 798
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 2 cut(s) 782, 877
FaiI YATR 3 cut(s) 780, 875, 927
FalI AAGNNNNNCTT 2 cut(s) 792, 824
FaqI GGGAC 4 cut(s) 107, 409, 650, 667
FatI CATG 2 cut(s) 778, 873
FauI CCCGC 4 cut(s) 512, 525, 605, 797
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 7 cut(s) 88, 564, 859, 862, 865, 868, 947
FokI GGATG 4 cut(s) 434, 778, 784, 899
FriOI GRGCYC 3 cut(s) 507, 618, 798
Fsp4HI GCNGC 7 cut(s) 88, 564, 859, 862, 865, 868, 947
FspBI CTAG 4 cut(s) 140, 452, 747, 756
GlaI GCGC 2 cut(s) 350, 939
GluI GCNGC 7 cut(s) 88, 564, 859, 862, 865, 868, 947
GsuI CTGGAG 1 cut(s) 29
HaeII RGCGCY 1 cut(s) 352
HaeIII GGCC 3 cut(s) 494, 844, 956
HgaI GACGC 5 cut(s) 148, 331, 433, 555, 835
HhaI GCGC 2 cut(s) 351, 940
Hin1I GRCGYC 1 cut(s) 566
Hin1II CATG 2 cut(s) 782, 877
Hin6I GCGC 2 cut(s) 349, 938
HinP1I GCGC 2 cut(s) 349, 938
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 5 cut(s) 134, 173, 179, 185, 473
HphI GGTGA 6 cut(s) 49, 139, 499, 610, 673, 713
Hpy166II GTNNAC 3 cut(s) 10, 154, 543
Hpy188I TCNGA 9 cut(s) 67, 172, 178, 184, 190, 461, 558, 633, 989
Hpy188III TCNNGA 5 cut(s) 46, 355, 388, 424, 436
Hpy8I GTNNAC 3 cut(s) 10, 154, 543
Hpy99I CGWCG 6 cut(s) 155, 197, 200, 470, 571, 829
HpyAV CCTTC 8 cut(s) 232, 385, 489, 520, 583, 664, 676, 692
HpyCH4III ACNGT 3 cut(s) 151, 400, 658
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 741
HpyF3I CTNAG 3 cut(s) 187, 501, 632
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 566
Hsp92II CATG 2 cut(s) 782, 877
HspAI GCGC 2 cut(s) 349, 938
Kpn2I TCCGGA 1 cut(s) 435
KroI GCCGGC 1 cut(s) 515
KroNI GCCGGC 1 cut(s) 517
Kzo9I GATC 9 cut(s) 19, 39, 48, 300, 321, 357, 461, 546, 558
LmnI GCTCC 3 cut(s) 497, 604, 793
Lsp1109I GCAGC 2 cut(s) 74, 933
MabI ACCWGGT 1 cut(s) 57
MaeI CTAG 4 cut(s) 140, 452, 747, 756
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 487
MalI GATC 9 cut(s) 21, 41, 50, 302, 323, 359, 463, 548, 560
MbiI CCGCTC 1 cut(s) 612
MboI GATC 9 cut(s) 19, 39, 48, 300, 321, 357, 461, 546, 558
MboII GAAGA 2 cut(s) 43, 707
MflI RGATCY 3 cut(s) 48, 300, 321
MhlI GDGCHC 4 cut(s) 507, 556, 618, 798
MluCI AATT 1 cut(s) 893
MlyI GAGTC 5 cut(s) 128, 167, 173, 179, 482
MmeI TCCRAC 5 cut(s) 195, 201, 207, 228, 711
MreI CGCCGGCG 1 cut(s) 515
MroI TCCGGA 1 cut(s) 435
MroNI GCCGGC 1 cut(s) 515
MroXI GAANNNNTTC 2 cut(s) 107, 983
MseI TTAA 1 cut(s) 942
MslI CAYNNNNRTG 1 cut(s) 878
MspA1I CMGCKG 1 cut(s) 330
MspCI CTTAAG 1 cut(s) 941
MspR9I CCNGG 4 cut(s) 35, 59, 292, 298
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 5 cut(s) 159, 342, 356, 470, 563
NaeI GCCGGC 1 cut(s) 517
NciI CCSGG 3 cut(s) 35, 292, 298
NdeII GATC 9 cut(s) 19, 39, 48, 300, 321, 357, 461, 546, 558
NgoMIV GCCGGC 1 cut(s) 515
NlaIII CATG 2 cut(s) 782, 877
NlaIV GGNNCC 5 cut(s) 33, 296, 302, 397, 458
NmeAIII GCCGAG 2 cut(s) 442, 810
NmuCI GTSAC 1 cut(s) 487
NruI TCGCGA 1 cut(s) 356
NspI RCATGY 1 cut(s) 782
NspV TTCGAA 1 cut(s) 101
PaeR7I CTCGAG 1 cut(s) 386
PdiI GCCGGC 1 cut(s) 517
PdmI GAANNNNTTC 2 cut(s) 107, 983
PflFI GACNNNGTC 2 cut(s) 59, 158
PkrI GCNGC 7 cut(s) 89, 565, 860, 863, 866, 869, 948
Ple19I CGATCG 2 cut(s) 22, 360
PleI GAGTC 5 cut(s) 128, 167, 173, 179, 481
PpsI GAGTC 5 cut(s) 128, 167, 173, 179, 481
PshAI GACNNNNGTC 1 cut(s) 443
Psp124BI GAGCTC 1 cut(s) 798
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 5 cut(s) 33, 296, 302, 397, 458
PspPI GGNCC 6 cut(s) 31, 294, 396, 438, 838, 843
PsuI RGATCY 3 cut(s) 48, 300, 321
PsyI GACNNNGTC 2 cut(s) 59, 158
PvuI CGATCG 2 cut(s) 22, 360
RruI TCGCGA 1 cut(s) 356
RseI CAYNNNNRTG 1 cut(s) 878
SacI GAGCTC 1 cut(s) 798
SalI GTCGAC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 942
SatI GCNGC 7 cut(s) 88, 564, 859, 862, 865, 868, 947
Sau3AI GATC 9 cut(s) 19, 39, 48, 300, 321, 357, 461, 546, 558
Sau96I GGNCC 6 cut(s) 31, 294, 396, 438, 838, 843
SchI GAGTC 5 cut(s) 128, 167, 173, 179, 482
ScrFI CCNGG 4 cut(s) 35, 59, 292, 298
SduI GDGCHC 4 cut(s) 507, 556, 618, 798
SexAI ACCWGGT 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 386
SfuI TTCGAA 1 cut(s) 101
SgrAI CRCCGGYG 2 cut(s) 484, 515
SinI GGWCC 5 cut(s) 31, 294, 396, 438, 838
SlaI CTCGAG 1 cut(s) 386
SmiMI CAYNNNNRTG 1 cut(s) 878
SmlI CTYRAG 4 cut(s) 386, 404, 941, 950
SmoI CTYRAG 4 cut(s) 386, 404, 941, 950
Sse9I AATT 1 cut(s) 893
SspMI CTAG 4 cut(s) 140, 452, 747, 756
SstI GAGCTC 1 cut(s) 798
StyD4I CCNGG 4 cut(s) 33, 57, 290, 296
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 3 cut(s) 151, 400, 658
TaiI ACGT 1 cut(s) 201
TaqI TCGA 9 cut(s) 18, 22, 54, 101, 153, 360, 387, 618, 816
TasI AATT 1 cut(s) 893
TauI GCSGC 5 cut(s) 566, 861, 864, 867, 870
Tru1I TTAA 1 cut(s) 942
Tru9I TTAA 1 cut(s) 942
TscAI CASTG 1 cut(s) 556
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 2 cut(s) 87, 946
Tsp45I GTSAC 1 cut(s) 487
TspGWI ACGGA 1 cut(s) 454
TspRI CASTG 1 cut(s) 556
Tth111I GACNNNGTC 2 cut(s) 59, 158
Vha464I CTTAAG 1 cut(s) 941
VpaK11BI GGWCC 5 cut(s) 31, 294, 396, 438, 838
XagI CCTNNNNNAGG 1 cut(s) 389
XceI RCATGY 1 cut(s) 782
XhoI CTCGAG 1 cut(s) 386
XmaJI CCTAGG 1 cut(s) 451
XmiI GTMKAC 1 cut(s) 153
XmnI GAANNNNTTC 2 cut(s) 107, 983
XspI CTAG 4 cut(s) 140, 452, 747, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.