Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009029

Physical Location & Seq

Genomic Coordinates Forward (+)

59483824 .. 59485272

Gene Structure 1449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG395700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAAATAGACGGCTTTGATCGGCTCCCGGACCCCGTGATCCTCCAGATCTTCGACCTGGTCTCGGACACCAAGACCCTCATTCGCTGCCTCGCCATTTCGAAACCCTTTAACTCCCTCGTCCCCCACATCGACTCCCTAGTCCTCATCGTCAACCGCCTCATCTCCTCCGACTCCGACGACGACGTTTCCAACCTCCTTGCCTATGCACTTTCCGTCGGTGTCGGTGATGAGATCGAAACAGGGTGGGGGAAACGATGTGCCGTTGTCCCAGACGAGCTCGTCGTTGATGGGGAGGGGTTTGTCGAGGACGATGTGTTTGCCGATGGGAGGCCCATGCTGGCGCAGAGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010540 GO:0010541 GO:0010817 GO:0023052 GO:0030054 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

118

Amino Acids

12.88

Weight (kDa)

4.09

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22220 AT1G78100
fragaria_vesca	FvH4_5g37750
malus_domestica	MD15G1366300.v1.1
prunus_persica	Prupe.1G514000_v2.0.a1
pyrus_communis	pycom15g32850
rosa_chinensis	RchiOBHm_Chr7g0239491
rosa_laevigata	RLG00000000753 RLG00000018504
rosa_multiflora	Rmu_co8072600.1_g000001 Rmu_sc0000381.1_g000021 Rmu_sc0000760.1_g000010 Rmu_sc0004058.1_g000019
rosa_roxburghii	Rroxscaffold_1G00005340 Rroxscaffold_3G00220890
rosa_rugosa	Rorug07G0328300.1
rosa_samantha	Rh2BG504200 Rh6AG395700 Rh7BG454700 Rh7CG499800 Rh7DG467900
rosa_wichuraiana	Rw7G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	140, 281
AciI	CCGC	1 cut(s)	157
AclWI	GGATC	1 cut(s)	34
AfiI	CCNNNNNNNGG	2 cut(s)	64, 330
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	87
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	2 cut(s)	31, 333
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	239
AsuII	TTCGAA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	2 cut(s)	284, 320
BceAI	ACGGC	2 cut(s)	28, 248
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BciT130I	CCWGG	1 cut(s)	59
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	140
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	2 cut(s)	29, 59
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	31, 333
BmiI	GGNNCC	2 cut(s)	26, 33
BmrFI	CCNGG	2 cut(s)	29, 59
BpmI	CTGGAG	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 330
BseBI	CCWGG	1 cut(s)	59
BseLI	CCNNNNNNNGG	2 cut(s)	64, 330
BseRI	GAGGAG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	74
BshFI	GGCC	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	2 cut(s)	107, 254
BslI	CCNNNNNNNGG	2 cut(s)	64, 330
BsmAI	GTCTC	1 cut(s)	67
BsmFI	GGGAC	2 cut(s)	107, 254
BsnI	GGCC	1 cut(s)	334
Bso31I	GGTCTC	1 cut(s)	67
Bsp119I	TTCGAA	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	4 cut(s)	19, 39, 48, 234
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	26, 33
BspPI	GGATC	1 cut(s)	34
BspT104I	TTCGAA	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	67
BssMI	GATC	4 cut(s)	19, 39, 48, 234
Bst2UI	CCWGG	1 cut(s)	59
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	4 cut(s)	22, 42, 51, 237
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	4 cut(s)	19, 39, 48, 234
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	27, 57
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	342
CfoI	GCGC	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	31, 333
CsiI	ACCWGGT	1 cut(s)	57
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	5 cut(s)	15, 25, 280, 334, 351
CviKI_1	RGCY	5 cut(s)	15, 25, 280, 334, 351
DpnI	GATC	4 cut(s)	21, 41, 50, 236
DpnII	GATC	4 cut(s)	19, 39, 48, 234
DrdI	GACNNNNNNGTC	2 cut(s)	140, 281
DseDI	GACNNNNNNGTC	2 cut(s)	140, 281
Ecl136II	GAGCTC	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	280
EcoICRI	GAGCTC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	282
FaeI	CATG	1 cut(s)	340
FaiI	YATR	2 cut(s)	207, 338
FaqI	GGGAC	2 cut(s)	107, 254
FatI	CATG	1 cut(s)	336
Fnu4HI	GCNGC	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	334
HapII	CCGG	1 cut(s)	29
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	1 cut(s)	340
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	134, 173
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	3 cut(s)	67, 172, 178
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	5 cut(s)	182, 185, 188, 221, 287
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	340
HspAI	GCGC	1 cut(s)	344
Kzo9I	GATC	4 cut(s)	19, 39, 48, 234
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	7 cut(s)	42, 44, 59, 71, 228, 285, 326
Lsp1109I	GCAGC	1 cut(s)	74
MabI	ACCWGGT	1 cut(s)	57
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	1 cut(s)	186
MalI	GATC	4 cut(s)	21, 41, 50, 236
MboI	GATC	4 cut(s)	19, 39, 48, 234
MboII	GAAGA	1 cut(s)	43
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	282
MlyI	GAGTC	2 cut(s)	128, 167
MmeI	TCCRAC	3 cut(s)	195, 201, 216
MseI	TTAA	1 cut(s)	111
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	29, 59
MvaI	CCWGG	1 cut(s)	59
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	4 cut(s)	19, 39, 48, 234
NlaIII	CATG	1 cut(s)	340
NlaIV	GGNNCC	2 cut(s)	26, 33
NspV	TTCGAA	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PflFI	GACNNNGTC	1 cut(s)	59
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	2 cut(s)	128, 167
PpsI	GAGTC	2 cut(s)	128, 167
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	26, 33
PspPI	GGNCC	2 cut(s)	31, 333
PsuI	RGATCY	1 cut(s)	48
PsyI	GACNNNGTC	1 cut(s)	59
SacI	GAGCTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	4 cut(s)	19, 39, 48, 234
Sau96I	GGNCC	2 cut(s)	31, 333
SchI	GAGTC	2 cut(s)	128, 167
ScrFI	CCNGG	2 cut(s)	29, 59
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	4 cut(s)	60, 189, 198, 282
SexAI	ACCWGGT	1 cut(s)	57
SfuI	TTCGAA	1 cut(s)	101
SinI	GGWCC	1 cut(s)	31
SsiI	CCGC	1 cut(s)	157
SspMI	CTAG	1 cut(s)	140
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	27, 57
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	5 cut(s)	54, 101, 132, 237, 306
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseI	GCWGC	1 cut(s)	87
TspGWI	ACGGA	1 cut(s)	205
Tth111I	GACNNNGTC	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	31
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.