Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8072600.1

Orthogroup ID

OG0009029

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 536

Gene Structure 535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8072600.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 391 bp

atggaaatagacggctttgatcggctcccggaccccgtgatcctccagatcttcgacctggtctcggtcaccaagaccctcattcgctgcctcgccatttcgaaaccctttaactccctcgtcccccacatcgactccctagtcctcatcgtcaaccgcctcatctcctcttcctcctccgacgacaacgtttccaacctccttgcctctgcacttttcgtcggtgtcagtgatgcgatcgatacagggttggggaaacgatgtgccgttgtcccagacgagctcgtcgttgatgggggggggggcacgttgggatgtagggtagaatgggttgcagtgttcagagcgtcgtctcctccgactcctactcagaacgactggcgacggtggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010540 GO:0010541 GO:0010817 GO:0023052 GO:0030054 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

130

Amino Acids

14.03

Weight (kDa)

4.75

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22220 AT1G78100
fragaria_vesca	FvH4_5g37750
malus_domestica	MD15G1366300.v1.1
prunus_persica	Prupe.1G514000_v2.0.a1
pyrus_communis	pycom15g32850
rosa_chinensis	RchiOBHm_Chr7g0239491
rosa_laevigata	RLG00000000753 RLG00000018504
rosa_multiflora	Rmu_co8072600.1_g000001 Rmu_sc0000381.1_g000021 Rmu_sc0000760.1_g000010 Rmu_sc0004058.1_g000019
rosa_roxburghii	Rroxscaffold_1G00005340 Rroxscaffold_3G00220890
rosa_rugosa	Rorug07G0328300.1
rosa_samantha	Rh2BG504200 Rh6AG395700 Rh7BG454700 Rh7CG499800 Rh7DG467900
rosa_wichuraiana	Rw7G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	140, 284
AciI	CCGC	1 cut(s)	157
AclI	AACGTT	1 cut(s)	189
AclWI	GGATC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	2 cut(s)	67, 357
AlwI	GGATC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	31
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	31
BaeGI	GKGCMC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	2 cut(s)	28, 251
BciT130I	CCWGG	1 cut(s)	59
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	67, 357
BfaI	CTAG	1 cut(s)	140
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	2 cut(s)	29, 59
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	2 cut(s)	26, 33
BmrFI	CCNGG	2 cut(s)	29, 59
BmsI	GCATC	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	29
Bsa29I	ATCGAT	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	383
BseBI	CCWGG	1 cut(s)	59
BseCI	ATCGAT	1 cut(s)	240
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	383
BseRI	GAGGAG	3 cut(s)	157, 166, 345
BseSI	GKGCMC	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	195
Bsh1285I	CGRYCG	1 cut(s)	240
BshVI	ATCGAT	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	2 cut(s)	107, 257
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	2 cut(s)	67, 357
BsmBI	CGTCTC	1 cut(s)	357
BsmFI	GGGAC	2 cut(s)	107, 257
Bso31I	GGTCTC	1 cut(s)	67
Bsp119I	TTCGAA	1 cut(s)	101
Bsp1286I	GDGCHC	2 cut(s)	285, 308
Bsp143I	GATC	4 cut(s)	19, 39, 48, 237
BspACI	CCGC	1 cut(s)	157
BspCNI	CTCAG	1 cut(s)	382
BspDI	ATCGAT	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	26, 33
BspPI	GGATC	1 cut(s)	34
BspT104I	TTCGAA	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	383
BssMI	GATC	4 cut(s)	19, 39, 48, 237
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	387
Bst6I	CTCTTC	1 cut(s)	175
BstBI	TTCGAA	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	369
BstEII	GGTNACC	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	320
BstKTI	GATC	4 cut(s)	22, 42, 51, 240
BstMAI	GTCTC	2 cut(s)	67, 357
BstMBI	GATC	4 cut(s)	19, 39, 48, 237
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	1 cut(s)	59
BstPI	GGTNACC	1 cut(s)	67
BstSCI	CCNGG	2 cut(s)	27, 57
BstSLI	GKGCMC	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	320
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	235, 342
Cfr13I	GGNCC	1 cut(s)	31
ClaI	ATCGAT	1 cut(s)	240
CseI	GACGC	1 cut(s)	336
CsiI	ACCWGGT	1 cut(s)	57
CviJI	RGCY	3 cut(s)	15, 25, 283
CviKI_1	RGCY	3 cut(s)	15, 25, 283
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	4 cut(s)	21, 41, 50, 239
DpnII	GATC	4 cut(s)	19, 39, 48, 237
DrdI	GACNNNNNNGTC	2 cut(s)	140, 284
DseDI	GACNNNNNNGTC	2 cut(s)	140, 284
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	283
Eco91I	GGTNACC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	357
FaqI	GGGAC	2 cut(s)	107, 257
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	1 cut(s)	327
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	29
HapII	CCGG	1 cut(s)	29
HgaI	GACGC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	134, 361
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	4 cut(s)	181, 344, 360, 372
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	5 cut(s)	185, 224, 290, 352, 387
HpyCH4III	ACNGT	1 cut(s)	387
HpyCH4IV	ACGT	2 cut(s)	189, 308
HpyCH4V	TGCA	2 cut(s)	212, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	2 cut(s)	189, 308
Kzo9I	GATC	4 cut(s)	19, 39, 48, 237
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	7 cut(s)	42, 44, 59, 71, 231, 288, 364
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	1 cut(s)	223
MabI	ACCWGGT	1 cut(s)	57
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	2 cut(s)	189, 308
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	4 cut(s)	21, 41, 50, 239
MboI	GATC	4 cut(s)	19, 39, 48, 237
MboII	GAAGA	2 cut(s)	43, 162
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	2 cut(s)	285, 308
MlyI	GAGTC	2 cut(s)	128, 355
MmeI	TCCRAC	3 cut(s)	204, 219, 383
MseI	TTAA	1 cut(s)	111
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	29, 59
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	388
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	4 cut(s)	19, 39, 48, 237
NlaIV	GGNNCC	2 cut(s)	26, 33
NmuCI	GTSAC	1 cut(s)	67
NspV	TTCGAA	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	2 cut(s)	285, 356
PflFI	GACNNNGTC	1 cut(s)	59
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	89
Ple19I	CGATCG	1 cut(s)	240
PleI	GAGTC	2 cut(s)	128, 355
PpsI	GAGTC	2 cut(s)	128, 355
Psp124BI	GAGCTC	1 cut(s)	285
Psp1406I	AACGTT	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	57
PspEI	GGTNACC	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	26, 33
PspPI	GGNCC	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	48
PsyI	GACNNNGTC	1 cut(s)	59
PvuI	CGATCG	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	4 cut(s)	19, 39, 48, 237
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	2 cut(s)	128, 355
ScrFI	CCNGG	2 cut(s)	29, 59
SduI	GDGCHC	2 cut(s)	285, 308
SetI	ASST	5 cut(s)	60, 192, 201, 285, 311
SexAI	ACCWGGT	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	223
SfuI	TTCGAA	1 cut(s)	101
SinI	GGWCC	1 cut(s)	31
SsiI	CCGC	1 cut(s)	157
SspMI	CTAG	1 cut(s)	140
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	27, 57
TaaI	ACNGT	1 cut(s)	387
TaiI	ACGT	2 cut(s)	192, 311
TaqI	TCGA	4 cut(s)	54, 101, 132, 240
TaqII	GACCGA	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	2 cut(s)	235, 342
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	1 cut(s)	87
Tsp45I	GTSAC	1 cut(s)	67
TspRI	CASTG	2 cut(s)	235, 342
Tth111I	GACNNNGTC	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	31
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.