Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009029

Physical Location & Seq

Genomic Coordinates Reverse (-)

7298810 .. 7299485

Gene Structure 676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00005340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAAATAGACGGCCGTGATCGGCTCCCGGACCCCGTGATCCTCCGGATCTTCGACCTGGTCTCGGACACCAAGACCCTCATTCGCCGCCTCGCCATTTCGAAACCCTTTAACTCCCTCGTCCCCCACATCGACTCCCTAGTCCTCATCGTCAACCGCCTCATCTCCTCCGACTCCGACGTTTCCAACCTCCTTGCCTATGCACTTGCCGTCGGTGTCGGTGATGCGATCGAAACAGGGATCTTCGACCTGGTCTCGGACACCAAGACCCTCATTCGTCGCCTCGCCATTTCGAAACCCTTTAACTCCCTCGTCCCCCACATCGACTCCCTAGTCCTCATCGTCAACCGCCTCATCTCCTCCGACTCCGACGTTCCCAACCTCCTTGCCTATGCACTTGCCGTCGGTGTCGGTGATGCGATCGAAATAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010540 GO:0010541 GO:0010817 GO:0023052 GO:0030054 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

144

Amino Acids

15.56

Weight (kDa)

4.82

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22220 AT1G78100
fragaria_vesca	FvH4_5g37750
malus_domestica	MD15G1366300.v1.1
prunus_persica	Prupe.1G514000_v2.0.a1
pyrus_communis	pycom15g32850
rosa_chinensis	RchiOBHm_Chr7g0239491
rosa_laevigata	RLG00000000753 RLG00000018504
rosa_multiflora	Rmu_co8072600.1_g000001 Rmu_sc0000381.1_g000021 Rmu_sc0000760.1_g000010 Rmu_sc0004058.1_g000019
rosa_roxburghii	Rroxscaffold_1G00005340 Rroxscaffold_3G00220890
rosa_rugosa	Rorug07G0328300.1
rosa_samantha	Rh2BG504200 Rh6AG395700 Rh7BG454700 Rh7CG499800 Rh7DG467900
rosa_wichuraiana	Rw7G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	140, 332
AccIII	TCCGGA	1 cut(s)	45
AciI	CCGC	3 cut(s)	88, 157, 349
AclWI	GGATC	3 cut(s)	34, 56, 248
AcoI	YGGCCR	1 cut(s)	13
AfiI	CCNNNNNNNGG	2 cut(s)	64, 256
AjnI	CCWGG	2 cut(s)	57, 249
Alw26I	GTCTC	2 cut(s)	67, 259
AlwI	GGATC	3 cut(s)	34, 56, 248
Aor13HI	TCCGGA	1 cut(s)	45
AoxI	GGCC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	31
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	233, 425
AsuII	TTCGAA	2 cut(s)	101, 293
AvaII	GGWCC	1 cut(s)	31
BceAI	ACGGC	3 cut(s)	28, 194, 386
BciT130I	CCWGG	2 cut(s)	59, 251
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	67, 259
BfaI	CTAG	2 cut(s)	140, 332
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	3 cut(s)	29, 59, 251
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	2 cut(s)	26, 33
BmrFI	CCNGG	3 cut(s)	29, 59, 251
BmsI	GCATC	2 cut(s)	214, 406
Bpu14I	TTCGAA	2 cut(s)	101, 293
BpuMI	CCSGG	1 cut(s)	29
BsaI	GGTCTC	2 cut(s)	67, 259
BsaWI	WCCGGW	1 cut(s)	45
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 311, 341
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 256
BseAI	TCCGGA	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	59, 251
BseLI	CCNNNNNNNGG	2 cut(s)	64, 256
BseRI	GAGGAG	2 cut(s)	157, 349
BseX3I	CGGCCG	1 cut(s)	13
Bsh1285I	CGRYCG	3 cut(s)	16, 231, 423
BshFI	GGCC	1 cut(s)	15
BsiEI	CGRYCG	3 cut(s)	16, 231, 423
BsiSI	CCGG	2 cut(s)	29, 46
BslFI	GGGAC	2 cut(s)	107, 299
BslI	CCNNNNNNNGG	2 cut(s)	64, 256
BsmAI	GTCTC	2 cut(s)	67, 259
BsmFI	GGGAC	2 cut(s)	107, 299
BsnI	GGCC	1 cut(s)	15
Bso31I	GGTCTC	2 cut(s)	67, 259
Bsp119I	TTCGAA	2 cut(s)	101, 293
Bsp13I	TCCGGA	1 cut(s)	45
Bsp143I	GATC	6 cut(s)	19, 39, 48, 228, 240, 420
BspACI	CCGC	3 cut(s)	88, 157, 349
BspANI	GGCC	1 cut(s)	15
BspEI	TCCGGA	1 cut(s)	45
BspLI	GGNNCC	2 cut(s)	26, 33
BspPI	GGATC	3 cut(s)	34, 56, 248
BspT104I	TTCGAA	2 cut(s)	101, 293
BspTNI	GGTCTC	2 cut(s)	67, 259
BssMI	GATC	6 cut(s)	19, 39, 48, 228, 240, 420
Bst2UI	CCWGG	2 cut(s)	59, 251
BstBI	TTCGAA	2 cut(s)	101, 293
BstKTI	GATC	6 cut(s)	22, 42, 51, 231, 243, 423
BstMAI	GTCTC	2 cut(s)	67, 259
BstMBI	GATC	6 cut(s)	19, 39, 48, 228, 240, 420
BstMCI	CGRYCG	3 cut(s)	16, 231, 423
BstNI	CCWGG	2 cut(s)	59, 251
BstSCI	CCNGG	3 cut(s)	27, 57, 249
BstX2I	RGATCY	2 cut(s)	48, 240
BstYI	RGATCY	2 cut(s)	48, 240
BstZI	CGGCCG	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	31
CsiI	ACCWGGT	2 cut(s)	57, 249
CviJI	RGCY	2 cut(s)	15, 25
CviKI_1	RGCY	2 cut(s)	15, 25
DpnI	GATC	6 cut(s)	21, 41, 50, 230, 242, 422
DpnII	GATC	6 cut(s)	19, 39, 48, 228, 240, 420
DrdI	GACNNNNNNGTC	2 cut(s)	140, 332
DseDI	GACNNNNNNGTC	2 cut(s)	140, 332
EaeI	YGGCCR	1 cut(s)	13
EagI	CGGCCG	1 cut(s)	13
EclXI	CGGCCG	1 cut(s)	13
Eco31I	GGTCTC	2 cut(s)	67, 259
Eco47I	GGWCC	1 cut(s)	31
Eco52I	CGGCCG	1 cut(s)	13
EcoRII	CCWGG	2 cut(s)	57, 249
FaiI	YATR	2 cut(s)	201, 393
FaqI	GGGAC	2 cut(s)	107, 299
Fnu4HI	GCNGC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	2 cut(s)	140, 332
GluI	GCNGC	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	15
HapII	CCGG	2 cut(s)	29, 46
HincII	GTYRAC	2 cut(s)	154, 346
HindII	GTYRAC	2 cut(s)	154, 346
HinfI	GANTC	4 cut(s)	134, 173, 326, 365
HpaII	CCGG	2 cut(s)	29, 46
HphI	GGTGA	2 cut(s)	233, 425
Hpy166II	GTNNAC	2 cut(s)	154, 346
Hpy188I	TCNGA	6 cut(s)	67, 172, 178, 259, 364, 370
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	2 cut(s)	154, 346
Hpy99I	CGWCG	5 cut(s)	182, 215, 282, 374, 407
HpyCH4IV	ACGT	2 cut(s)	180, 372
HpyCH4V	TGCA	2 cut(s)	203, 395
HpySE526I	ACGT	2 cut(s)	180, 372
Kpn2I	TCCGGA	1 cut(s)	45
Kzo9I	GATC	6 cut(s)	19, 39, 48, 228, 240, 420
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	7 cut(s)	42, 44, 59, 71, 222, 236, 263
LweI	GCATC	2 cut(s)	214, 406
MabI	ACCWGGT	2 cut(s)	57, 249
MaeI	CTAG	2 cut(s)	140, 332
MaeII	ACGT	2 cut(s)	180, 372
MalI	GATC	6 cut(s)	21, 41, 50, 230, 242, 422
MboI	GATC	6 cut(s)	19, 39, 48, 228, 240, 420
MboII	GAAGA	2 cut(s)	43, 235
MflI	RGATCY	2 cut(s)	48, 240
MlyI	GAGTC	4 cut(s)	128, 167, 320, 359
MmeI	TCCRAC	5 cut(s)	195, 201, 210, 387, 393
MroI	TCCGGA	1 cut(s)	45
MseI	TTAA	2 cut(s)	111, 303
MspI	CCGG	2 cut(s)	29, 46
MspR9I	CCNGG	3 cut(s)	29, 59, 251
MvaI	CCWGG	2 cut(s)	59, 251
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	6 cut(s)	19, 39, 48, 228, 240, 420
NlaIV	GGNNCC	2 cut(s)	26, 33
NspV	TTCGAA	2 cut(s)	101, 293
PflFI	GACNNNGTC	2 cut(s)	59, 251
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	89
Ple19I	CGATCG	2 cut(s)	231, 423
PleI	GAGTC	4 cut(s)	128, 167, 320, 359
PpsI	GAGTC	4 cut(s)	128, 167, 320, 359
Psp6I	CCWGG	2 cut(s)	57, 249
PspGI	CCWGG	2 cut(s)	57, 249
PspN4I	GGNNCC	2 cut(s)	26, 33
PspPI	GGNCC	1 cut(s)	31
PsuI	RGATCY	2 cut(s)	48, 240
PsyI	GACNNNGTC	2 cut(s)	59, 251
PvuI	CGATCG	2 cut(s)	231, 423
SaqAI	TTAA	2 cut(s)	111, 303
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	6 cut(s)	19, 39, 48, 228, 240, 420
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	4 cut(s)	128, 167, 320, 359
ScrFI	CCNGG	3 cut(s)	29, 59, 251
SetI	ASST	6 cut(s)	60, 183, 192, 252, 375, 384
SexAI	ACCWGGT	2 cut(s)	57, 249
SfaNI	GCATC	2 cut(s)	214, 406
SfuI	TTCGAA	2 cut(s)	101, 293
SinI	GGWCC	1 cut(s)	31
SsiI	CCGC	3 cut(s)	88, 157, 349
SspMI	CTAG	2 cut(s)	140, 332
StyD4I	CCNGG	3 cut(s)	27, 57, 249
TaiI	ACGT	2 cut(s)	183, 375
TaqI	TCGA	8 cut(s)	54, 101, 132, 231, 246, 293, 324, 423
TauI	GCSGC	1 cut(s)	90
Tru1I	TTAA	2 cut(s)	111, 303
Tru9I	TTAA	2 cut(s)	111, 303
Tth111I	GACNNNGTC	2 cut(s)	59, 251
VpaK11BI	GGWCC	1 cut(s)	31
XspI	CTAG	2 cut(s)	140, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.