Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009029

Physical Location & Seq

Genomic Coordinates Forward (+)

30917097 .. 30917630

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018504

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAAATGGATGGCTTAGATCGGCTCCCCGACCCGGTGATCCTCCAGATCTTCGACCTAGTCTCGGACACCAAGACCCTCATTCGCTGCCTCGCCATTTTGAAACACTTCAACTCCCTTGTCCCCAACATCGACTCCCTAGCCCTCACCGTCGACTGCCTCATCTCCTCTGACTTCAATGACGACGTTTCCTTCCCACTTTCCGACGGTGTCGGCAATGCGATCGATGAAAGGTTAGGGAAACAGCGTGCCGTTGTCCCAGACGAGCTTGTCGTTGACGGGGAGGGGTCTGTCGGGGACGATGTGTTTGTCGACGGGGAGGCCCATGCCGGCGTAAAGCCGATGAGAGGAGGCGACGGAACTGTGGACGACACTGTTTCCGCCTATGATTTTGGACACGACGCTGCTCAGTCTTCCGCCCATGATTTTCGGGGCACGCTGCGATGCAGGGTGGAGTGGGTGGCAGTGTTCAGAGCGTCGTCTCCTCCGACTCCTACTCCGAAAGATCGGCGACGGTGGCAGAGTGAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010540 GO:0010541 GO:0010817 GO:0023052 GO:0030054 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0060918 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

178

Amino Acids

19.23

Weight (kDa)

4.47

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22220 AT1G78100
fragaria_vesca	FvH4_5g37750
malus_domestica	MD15G1366300.v1.1
prunus_persica	Prupe.1G514000_v2.0.a1
pyrus_communis	pycom15g32850
rosa_chinensis	RchiOBHm_Chr7g0239491
rosa_laevigata	RLG00000000753 RLG00000018504
rosa_multiflora	Rmu_co8072600.1_g000001 Rmu_sc0000381.1_g000021 Rmu_sc0000760.1_g000010 Rmu_sc0004058.1_g000019
rosa_roxburghii	Rroxscaffold_1G00005340 Rroxscaffold_3G00220890
rosa_rugosa	Rorug07G0328300.1
rosa_samantha	Rh2BG504200 Rh6AG395700 Rh7BG454700 Rh7CG499800 Rh7DG467900
rosa_wichuraiana	Rw7G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
AccI	GTMKAC	2 cut(s)	153, 312
AciI	CCGC	2 cut(s)	381, 417
AclWI	GGATC	1 cut(s)	34
AfiI	CCNNNNNNNGG	3 cut(s)	34, 64, 347
AgsI	TTSAA	3 cut(s)	103, 112, 178
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
Alw26I	GTCTC	2 cut(s)	67, 486
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	3 cut(s)	87, 404, 439
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
Asp700I	GAANNNNTTC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	322
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	2 cut(s)	49, 139
BaeGI	GKGCMC	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	405
BbvI	GCAGC	3 cut(s)	74, 391, 426
BccI	CCATC	1 cut(s)	5
BceAI	ACGGC	1 cut(s)	236
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BcnI	CCSGG	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	67, 486
BfaI	CTAG	2 cut(s)	59, 140
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	3 cut(s)	88, 405, 440
BlsI	GCNGC	3 cut(s)	89, 406, 441
Bme1390I	CCNGG	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	434
BpiI	GAAGAC	1 cut(s)	405
BpmI	CTGGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	35
Bsa29I	ATCGAT	1 cut(s)	225
BsaXI	ACNNNNNCTCC	6 cut(s)	98, 119, 128, 149, 481, 511
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 64, 347
Bse118I	RCCGGY	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	223
BseCI	ATCGAT	1 cut(s)	225
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	3 cut(s)	34, 64, 347
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	422
BseRI	GAGGAG	3 cut(s)	157, 363, 474
BseSI	GKGCMC	1 cut(s)	437
BseXI	GCAGC	3 cut(s)	74, 391, 426
Bsh1285I	CGRYCG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	323
BshVI	ATCGAT	1 cut(s)	225
BsiEI	CGRYCG	1 cut(s)	225
BsiSI	CCGG	2 cut(s)	35, 330
BslFI	GGGAC	3 cut(s)	107, 242, 311
BslI	CCNNNNNNNGG	3 cut(s)	34, 64, 347
BsmAI	GTCTC	2 cut(s)	67, 486
BsmBI	CGTCTC	1 cut(s)	486
BsmFI	GGGAC	3 cut(s)	107, 242, 311
BsnI	GGCC	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	5 cut(s)	19, 39, 48, 222, 505
BspACI	CCGC	2 cut(s)	381, 417
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	421
BspDI	ATCGAT	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	26
BspPI	GGATC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	329
BssMI	GATC	5 cut(s)	19, 39, 48, 222, 505
Bst4CI	ACNGT	5 cut(s)	151, 209, 364, 376, 516
BstC8I	GCNNGC	3 cut(s)	249, 331, 437
BstDEI	CTNAG	2 cut(s)	16, 408
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	5 cut(s)	22, 42, 51, 225, 508
BstMAI	GTCTC	2 cut(s)	67, 486
BstMBI	GATC	5 cut(s)	19, 39, 48, 222, 505
BstMCI	CGRYCG	1 cut(s)	225
BstMWI	GCNNNNNNNGC	1 cut(s)	517
BstSCI	CCNGG	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	437
BstV1I	GCAGC	3 cut(s)	74, 391, 426
BstV2I	GAAGAC	1 cut(s)	405
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	323
BsuTUI	ATCGAT	1 cut(s)	225
BtgZI	GCGATG	1 cut(s)	457
BtsCI	GGATG	1 cut(s)	16
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	372, 471
Cac8I	GCNNGC	3 cut(s)	249, 331, 437
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	322
ClaI	ATCGAT	1 cut(s)	225
CseI	GACGC	2 cut(s)	410, 465
CviAII	CATG	2 cut(s)	326, 422
CviJI	RGCY	7 cut(s)	15, 25, 143, 268, 323, 340, 530
CviKI_1	RGCY	7 cut(s)	15, 25, 143, 268, 323, 340, 530
DdeI	CTNAG	2 cut(s)	16, 408
DpnI	GATC	5 cut(s)	21, 41, 50, 224, 507
DpnII	GATC	5 cut(s)	19, 39, 48, 222, 505
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
EciI	GGCGGA	2 cut(s)	370, 406
Esp3I	CGTCTC	1 cut(s)	486
FaeI	CATG	2 cut(s)	329, 425
FaiI	YATR	3 cut(s)	327, 387, 423
FaqI	GGGAC	3 cut(s)	107, 242, 311
FatI	CATG	2 cut(s)	325, 421
FblI	GTMKAC	2 cut(s)	153, 312
Fnu4HI	GCNGC	3 cut(s)	88, 405, 440
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	3 cut(s)	88, 405, 440
FspBI	CTAG	2 cut(s)	59, 140
GluI	GCNGC	3 cut(s)	88, 405, 440
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	323
HapII	CCGG	2 cut(s)	35, 330
HgaI	GACGC	2 cut(s)	410, 465
Hin1II	CATG	2 cut(s)	329, 425
HincII	GTYRAC	3 cut(s)	154, 277, 313
HindII	GTYRAC	3 cut(s)	154, 277, 313
HinfI	GANTC	2 cut(s)	134, 490
HpaII	CCGG	2 cut(s)	35, 330
HphI	GGTGA	2 cut(s)	49, 139
Hpy166II	GTNNAC	4 cut(s)	154, 277, 313, 367
Hpy188I	TCNGA	6 cut(s)	67, 172, 205, 473, 489, 501
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	4 cut(s)	154, 277, 313, 367
Hpy99I	CGWCG	8 cut(s)	155, 188, 209, 317, 359, 404, 481, 516
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	5 cut(s)	151, 209, 364, 376, 516
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	447
HpyF10VI	GCNNNNNNNGC	1 cut(s)	517
HpyF3I	CTNAG	2 cut(s)	16, 408
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	329, 425
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
Kzo9I	GATC	5 cut(s)	19, 39, 48, 222, 505
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	5 cut(s)	48, 59, 273, 343, 433
Lsp1109I	GCAGC	3 cut(s)	74, 391, 426
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	2 cut(s)	59, 140
MaeII	ACGT	1 cut(s)	186
MalI	GATC	5 cut(s)	21, 41, 50, 224, 507
MboI	GATC	5 cut(s)	19, 39, 48, 222, 505
MboII	GAAGA	2 cut(s)	43, 405
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	437
MlyI	GAGTC	2 cut(s)	128, 484
MmeI	TCCRAC	2 cut(s)	228, 512
MroNI	GCCGGC	1 cut(s)	329
MroXI	GAANNNNTTC	1 cut(s)	107
MspI	CCGG	2 cut(s)	35, 330
MspR9I	CCNGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	517
NaeI	GCCGGC	1 cut(s)	331
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	5 cut(s)	19, 39, 48, 222, 505
NgoMIV	GCCGGC	1 cut(s)	329
NlaIII	CATG	2 cut(s)	329, 425
NlaIV	GGNNCC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 485
PdiI	GCCGGC	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	107
PflFI	GACNNNGTC	2 cut(s)	59, 209
PkrI	GCNGC	3 cut(s)	89, 406, 441
Ple19I	CGATCG	1 cut(s)	225
PleI	GAGTC	2 cut(s)	128, 484
PpsI	GAGTC	2 cut(s)	128, 484
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	48
PsyI	GACNNNGTC	2 cut(s)	59, 209
PvuI	CGATCG	1 cut(s)	225
SalI	GTCGAC	2 cut(s)	152, 311
SatI	GCNGC	3 cut(s)	88, 405, 440
Sau3AI	GATC	5 cut(s)	19, 39, 48, 222, 505
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	2 cut(s)	128, 484
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	437
SetI	ASST	4 cut(s)	60, 189, 236, 270
SfaNI	GCATC	1 cut(s)	434
SsiI	CCGC	2 cut(s)	381, 417
SspMI	CTAG	2 cut(s)	59, 140
StyD4I	CCNGG	1 cut(s)	33
TaaI	ACNGT	5 cut(s)	151, 209, 364, 376, 516
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	5 cut(s)	54, 132, 153, 225, 312
TscAI	CASTG	2 cut(s)	379, 471
TseI	GCWGC	3 cut(s)	87, 404, 439
TspDTI	ATGAA	1 cut(s)	243
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	2 cut(s)	379, 471
Tth111I	GACNNNGTC	2 cut(s)	59, 209
XmiI	GTMKAC	2 cut(s)	153, 312
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	2 cut(s)	59, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.