AT1G78100

F-box family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009029
Physical Location & Seq
Forward (+)
29387672 .. 29389222
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78100.1

Sequence Viewer

Length: 1005 bp
ATGGACGCTTTTGATGCGATTCCAGATCCTGTGGTCATCGACATTTTGAACAGAGTCGGTGACGTCAAAACGTTAATACGATGTCGTTCCGTTTCTAAACGATTCAACTCGTTAGCCACTCAGTCTGAGTCGCTCCTTCTCCAACTCGATCAGATCCTCGGAGCCACCGAATCTGACTCCGAGATCGATTCTCCTATCGCTAGCTTCTTCCGATCTCTCTTCAAATCCATTCACGGTCTCCTTCCTCCTATCTTCTCCAAACCAGCTAACTCTGACGAAATCCTAACCCGATCTCCGAAAACTCCGGCTCAGATTCTCTCCGGATTTGAACGGATCCGGAATCTGGAGGTGGAATTATACGGTGGTGATGTCAAGCTTGAGAAAGGCGCCGCCGTTAAGTGGAAGGCTGAGTTCGGGAAAACTCTCAAGAGCTGCGTCATCGTCGCTTTCCGTTCCGCGACGGTTAATACTTCAGCAGCTACGGAAGCTGCCGCCGTCGTCGACGGTGTTGTTGAGTCAGATTCGGAGTTTGTTTGTGGATTGAAGACGCGCGTGGTGTGGACGATCAGCGCGTTGATGGCGGCTTCCACGCGTCATTACTTGATGAGAGATTTGGTGAAAGATCACAAGGAGATGGAGAAATTGATTGTGCGTGACAGTGATGGTGAAGGTACGGTGGTGATGGACGCGGCGGGGATGAAAGAATACAGAGAGACGGAGGTGCGTGGGGATAATAAAGAATCAGAGCGCGTGGGGGAACGAACTGTGGTACCTAGCGTGAGGATGAGTATGAGACACGCGCCGTCGCTGATGCTGAAGAGCGGGATTTGTCTCGAAGCAGCGACGCTGGTGGTCGTAAGGCCGACTGGTGTGGCTTCCGATGATAACGATGTTGAGCTGGTGACGGAGGCGTTCGCCGGAGATGGCGACGATTGTATGTACGGAGAAGCTGTTACGGCGTTGCTTAAGCGTAGGAGAAATGTGTTAGAGATGAATTCTTTCTAA

Protein Analysis

334

Amino Acids

36.55

Weight (kDa)

5.28

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 5 - 42 8.7e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 66
Acc65I GGTACC 1 cut(s) 769
AccB1I GGYRCC 2 cut(s) 386, 769
AccBSI CCGCTC 1 cut(s) 822
AccI GTMKAC 1 cut(s) 501
AccII CGCG 8 cut(s) 458, 550, 552, 572, 592, 689, 750, 800
AccIII TCCGGA 2 cut(s) 320, 336
AciI CCGC 7 cut(s) 390, 456, 492, 581, 689, 692, 822
AclI AACGTT 1 cut(s) 71
AclWI GGATC 4 cut(s) 20, 148, 328, 341
AcsI RAATTY 1 cut(s) 994
AcuI CTGAAG 2 cut(s) 456, 836
AcyI GRCGYC 2 cut(s) 63, 387
AfaI GTAC 3 cut(s) 673, 771, 941
AfiI CCNNNNNNNGG 2 cut(s) 343, 399
AflII CTTAAG 1 cut(s) 965
AflIII ACRYGT 1 cut(s) 590
AgsI TTSAA 5 cut(s) 49, 106, 223, 329, 544
AluBI AGCT 8 cut(s) 204, 266, 376, 432, 479, 488, 898, 950
AluI AGCT 8 cut(s) 204, 266, 376, 432, 479, 488, 898, 950
Alw26I GTCTC 4 cut(s) 242, 707, 787, 836
AlwI GGATC 4 cut(s) 20, 148, 328, 341
AlwNI CAGNNNCTG 1 cut(s) 29
Aor13HI TCCGGA 2 cut(s) 320, 336
AoxI GGCC 1 cut(s) 860
ApeKI GCWGC 4 cut(s) 432, 476, 488, 839
ApoI RAATTY 1 cut(s) 994
Asp700I GAANNNNTTC 1 cut(s) 998
Asp718I GGTACC 1 cut(s) 769
AspLEI GCGC 5 cut(s) 389, 552, 572, 750, 802
AsuHPI GGTGA 6 cut(s) 71, 377, 628, 677, 691, 913
AsuNHI GCTAGC 1 cut(s) 200
BaeI ACNNNNGTAYC 4 cut(s) 663, 696, 753, 786
BamHI GGATCC 1 cut(s) 333
BanI GGYRCC 2 cut(s) 386, 769
BbsI GAAGAC 1 cut(s) 551
BbvI GCAGC 4 cut(s) 419, 475, 488, 851
BccI CCATC 5 cut(s) 571, 628, 656, 676, 917
BceAI ACGGC 4 cut(s) 377, 479, 787, 972
BcoDI GTCTC 4 cut(s) 242, 707, 787, 836
BfaI CTAG 2 cut(s) 201, 774
BfoI RGCGCY 1 cut(s) 390
BfrI CTTAAG 1 cut(s) 965
BisI GCNGC 8 cut(s) 390, 433, 477, 489, 492, 582, 690, 840
BlsI GCNGC 8 cut(s) 391, 434, 478, 490, 493, 583, 691, 841
BmiI GGNNCC 4 cut(s) 163, 335, 388, 771
BmsI GCATC 2 cut(s) 4, 801
BmtI GCTAGC 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 551
BpmI CTGGAG 1 cut(s) 365
BpuEI CTTGAG 2 cut(s) 398, 410
Bsa29I ATCGAT 1 cut(s) 186
BsaHI GRCGYC 2 cut(s) 63, 387
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 157
BsaWI WCCGGW 2 cut(s) 320, 336
BsaXI ACNNNNNCTCC 4 cut(s) 277, 307, 936, 966
Bsc4I CCNNNNNNNGG 2 cut(s) 343, 399
Bse1I ACTGG 1 cut(s) 871
BseAI TCCGGA 2 cut(s) 320, 336
BseCI ATCGAT 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 2 cut(s) 702, 789
BseLI CCNNNNNNNGG 2 cut(s) 343, 399
BseMII CTCAG 4 cut(s) 117, 134, 323, 399
BseNI ACTGG 1 cut(s) 871
BseXI GCAGC 4 cut(s) 419, 475, 488, 851
Bsh1236I CGCG 8 cut(s) 458, 550, 552, 572, 592, 689, 750, 800
BshFI GGCC 1 cut(s) 862
BshNI GGYRCC 2 cut(s) 386, 769
BshVI ATCGAT 1 cut(s) 186
BsiSI CCGG 4 cut(s) 305, 321, 337, 918
BslI CCNNNNNNNGG 2 cut(s) 343, 399
BsmAI GTCTC 4 cut(s) 242, 707, 787, 836
BsmBI CGTCTC 1 cut(s) 707
BsnI GGCC 1 cut(s) 862
Bso31I GGTCTC 1 cut(s) 242
Bsp13I TCCGGA 2 cut(s) 320, 336
Bsp143I GATC 9 cut(s) 25, 148, 153, 183, 212, 290, 333, 564, 622
BspACI CCGC 7 cut(s) 390, 456, 492, 581, 689, 692, 822
BspANI GGCC 1 cut(s) 862
BspCNI CTCAG 4 cut(s) 118, 133, 322, 400
BspDI ATCGAT 1 cut(s) 186
BspEI TCCGGA 2 cut(s) 320, 336
BspFNI CGCG 8 cut(s) 458, 550, 552, 572, 592, 689, 750, 800
BspLI GGNNCC 4 cut(s) 163, 335, 388, 771
BspOI GCTAGC 1 cut(s) 204
BspPI GGATC 4 cut(s) 20, 148, 328, 341
BspQI GCTCTTC 1 cut(s) 812
BspT107I GGYRCC 2 cut(s) 386, 769
BspTI CTTAAG 1 cut(s) 965
BspTNI GGTCTC 1 cut(s) 242
BsrBI CCGCTC 1 cut(s) 822
BsrI ACTGG 1 cut(s) 871
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 9 cut(s) 25, 148, 153, 183, 212, 290, 333, 564, 622
BssNI GRCGYC 2 cut(s) 63, 387
Bst4CI ACNGT 7 cut(s) 236, 362, 463, 506, 659, 676, 766
Bst6I CTCTTC 2 cut(s) 224, 812
BstACI GRCGYC 2 cut(s) 63, 387
BstAFI CTTAAG 1 cut(s) 965
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 4 cut(s) 120, 126, 309, 408
BstF5I GGATG 2 cut(s) 702, 789
BstFNI CGCG 8 cut(s) 458, 550, 552, 572, 592, 689, 750, 800
BstH2I RGCGCY 1 cut(s) 390
BstHHI GCGC 5 cut(s) 389, 552, 572, 750, 802
BstKTI GATC 9 cut(s) 28, 151, 156, 186, 215, 293, 336, 567, 625
BstMAI GTCTC 4 cut(s) 242, 707, 787, 836
BstMBI GATC 9 cut(s) 25, 148, 153, 183, 212, 290, 333, 564, 622
BstMWI GCNNNNNNNGC 4 cut(s) 14, 485, 578, 956
BstUI CGCG 8 cut(s) 458, 550, 552, 572, 592, 689, 750, 800
BstV1I GCAGC 4 cut(s) 419, 475, 488, 851
BstV2I GAAGAC 1 cut(s) 551
BstX2I RGATCY 3 cut(s) 25, 153, 333
BstYI RGATCY 3 cut(s) 25, 153, 333
Bsu15I ATCGAT 1 cut(s) 186
BsuRI GGCC 1 cut(s) 862
BsuTUI ATCGAT 1 cut(s) 186
BtsCI GGATG 2 cut(s) 702, 789
BtsIMutI CAGTG 1 cut(s) 664
Cac8I GCNNGC 1 cut(s) 202
CaiI CAGNNNCTG 1 cut(s) 29
CfoI GCGC 5 cut(s) 389, 552, 572, 750, 802
ClaI ATCGAT 1 cut(s) 186
CseI GACGC 6 cut(s) 14, 424, 556, 581, 695, 853
Csp6I GTAC 3 cut(s) 672, 770, 940
CviQI GTAC 3 cut(s) 672, 770, 940
DdeI CTNAG 4 cut(s) 120, 126, 309, 408
DinI GGCGCC 1 cut(s) 388
DpnI GATC 9 cut(s) 27, 150, 155, 185, 214, 292, 335, 566, 624
DpnII GATC 9 cut(s) 25, 148, 153, 183, 212, 290, 333, 564, 622
Eam1104I CTCTTC 2 cut(s) 224, 812
EarI CTCTTC 2 cut(s) 224, 812
Eco31I GGTCTC 1 cut(s) 242
Eco57I CTGAAG 2 cut(s) 456, 836
EcoRI GAATTC 1 cut(s) 994
EgeI GGCGCC 1 cut(s) 388
EheI GGCGCC 1 cut(s) 388
Esp3I CGTCTC 1 cut(s) 707
FaiI YATR 3 cut(s) 358, 791, 938
FauI CCCGC 2 cut(s) 685, 815
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 8 cut(s) 390, 433, 477, 489, 492, 582, 690, 840
FokI GGATG 2 cut(s) 709, 796
Fsp4HI GCNGC 8 cut(s) 390, 433, 477, 489, 492, 582, 690, 840
FspBI CTAG 2 cut(s) 201, 774
GlaI GCGC 5 cut(s) 388, 551, 571, 749, 801
GluI GCNGC 8 cut(s) 390, 433, 477, 489, 492, 582, 690, 840
GsuI CTGGAG 1 cut(s) 365
HaeII RGCGCY 1 cut(s) 390
HaeIII GGCC 1 cut(s) 862
HapII CCGG 4 cut(s) 305, 321, 337, 918
HgaI GACGC 6 cut(s) 14, 424, 556, 581, 695, 853
HhaI GCGC 5 cut(s) 389, 552, 572, 750, 802
Hin1I GRCGYC 2 cut(s) 63, 387
Hin6I GCGC 5 cut(s) 387, 550, 570, 748, 800
HinP1I GCGC 5 cut(s) 387, 550, 570, 748, 800
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HindIII AAGCTT 1 cut(s) 374
HpaII CCGG 4 cut(s) 305, 321, 337, 918
HphI GGTGA 6 cut(s) 71, 377, 628, 677, 691, 913
Hpy166II GTNNAC 2 cut(s) 502, 561
Hpy188III TCNNGA 7 cut(s) 23, 321, 337, 344, 415, 427, 833
Hpy8I GTNNAC 2 cut(s) 502, 561
Hpy99I CGWCG 8 cut(s) 446, 463, 500, 503, 506, 808, 847, 932
HpyAV CCTTC 4 cut(s) 146, 251, 397, 662
HpyCH4III ACNGT 7 cut(s) 236, 362, 463, 506, 659, 676, 766
HpyCH4IV ACGT 2 cut(s) 63, 71
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 485, 578, 956
HpyF3I CTNAG 4 cut(s) 120, 126, 309, 408
HpySE526I ACGT 2 cut(s) 63, 71
Hsp92I GRCGYC 2 cut(s) 63, 387
HspAI GCGC 5 cut(s) 387, 550, 570, 748, 800
KasI GGCGCC 1 cut(s) 386
Kpn2I TCCGGA 2 cut(s) 320, 336
KpnI GGTACC 1 cut(s) 773
Kzo9I GATC 9 cut(s) 25, 148, 153, 183, 212, 290, 333, 564, 622
LguI GCTCTTC 1 cut(s) 812
LmnI GCTCC 2 cut(s) 138, 161
Lsp1109I GCAGC 4 cut(s) 419, 475, 488, 851
LweI GCATC 2 cut(s) 4, 801
MaeI CTAG 2 cut(s) 201, 774
MaeII ACGT 2 cut(s) 63, 71
MaeIII GTNAC 4 cut(s) 59, 653, 901, 952
MalI GATC 9 cut(s) 27, 150, 155, 185, 214, 292, 335, 566, 624
MbiI CCGCTC 1 cut(s) 822
MboI GATC 9 cut(s) 25, 148, 153, 183, 212, 290, 333, 564, 622
MboII GAAGA 5 cut(s) 199, 211, 244, 556, 829
MflI RGATCY 3 cut(s) 25, 153, 333
MluCI AATT 3 cut(s) 353, 641, 994
MluI ACGCGT 1 cut(s) 590
Mly113I GGCGCC 1 cut(s) 387
MlyI GAGTC 4 cut(s) 63, 137, 170, 524
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 6 cut(s) 167, 255, 340, 712, 774, 901
MroI TCCGGA 2 cut(s) 320, 336
MroXI GAANNNNTTC 1 cut(s) 998
MseI TTAA 4 cut(s) 74, 396, 465, 966
MspCI CTTAAG 1 cut(s) 965
MspI CCGG 4 cut(s) 305, 321, 337, 918
MvnI CGCG 8 cut(s) 458, 550, 552, 572, 592, 689, 750, 800
MwoI GCNNNNNNNGC 4 cut(s) 14, 485, 578, 956
NarI GGCGCC 1 cut(s) 387
NdeII GATC 9 cut(s) 25, 148, 153, 183, 212, 290, 333, 564, 622
NheI GCTAGC 1 cut(s) 200
NlaIV GGNNCC 4 cut(s) 163, 335, 388, 771
NmuCI GTSAC 3 cut(s) 59, 653, 901
PciSI GCTCTTC 1 cut(s) 812
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 569
PdmI GAANNNNTTC 1 cut(s) 998
PfeI GAWTC 8 cut(s) 19, 102, 170, 188, 313, 340, 521, 740
PkrI GCNGC 8 cut(s) 391, 434, 478, 490, 493, 583, 691, 841
PleI GAGTC 4 cut(s) 62, 136, 170, 523
PluTI GGCGCC 1 cut(s) 390
PpsI GAGTC 4 cut(s) 62, 136, 170, 523
Psp1406I AACGTT 1 cut(s) 71
PspN4I GGNNCC 4 cut(s) 163, 335, 388, 771
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 3 cut(s) 25, 153, 333
RsaI GTAC 3 cut(s) 673, 771, 941
RsaNI GTAC 3 cut(s) 672, 770, 940
SalI GTCGAC 1 cut(s) 500
SapI GCTCTTC 1 cut(s) 812
SaqAI TTAA 4 cut(s) 74, 396, 465, 966
SatI GCNGC 8 cut(s) 390, 433, 477, 489, 492, 582, 690, 840
Sau3AI GATC 9 cut(s) 25, 148, 153, 183, 212, 290, 333, 564, 622
SchI GAGTC 4 cut(s) 63, 137, 170, 524
SfaNI GCATC 2 cut(s) 4, 801
SfoI GGCGCC 1 cut(s) 388
SgrDI CGTCGACG 1 cut(s) 500
SmlI CTYRAG 3 cut(s) 377, 425, 965
SmoI CTYRAG 3 cut(s) 377, 425, 965
Sse9I AATT 3 cut(s) 353, 641, 994
SsiI CCGC 7 cut(s) 390, 456, 492, 581, 689, 692, 822
SspDI GGCGCC 1 cut(s) 386
SspMI CTAG 2 cut(s) 201, 774
TaaI ACNGT 7 cut(s) 236, 362, 463, 506, 659, 676, 766
TaiI ACGT 2 cut(s) 66, 74
TaqI TCGA 5 cut(s) 39, 147, 186, 501, 834
TasI AATT 3 cut(s) 353, 641, 994
TauI GCSGC 4 cut(s) 392, 494, 584, 692
TfiI GAWTC 8 cut(s) 19, 102, 170, 188, 313, 340, 521, 740
Tru1I TTAA 4 cut(s) 74, 396, 465, 966
Tru9I TTAA 4 cut(s) 74, 396, 465, 966
TscAI CASTG 1 cut(s) 664
TseFI GTSAC 3 cut(s) 59, 653, 901
TseI GCWGC 4 cut(s) 432, 476, 488, 839
Tsp45I GTSAC 3 cut(s) 59, 653, 901
TspDTI ATGAA 1 cut(s) 713
TspGWI ACGGA 7 cut(s) 79, 346, 440, 497, 731, 920, 957
TspRI CASTG 1 cut(s) 664
Vha464I CTTAAG 1 cut(s) 965
XapI RAATTY 1 cut(s) 994
XmiI GTMKAC 1 cut(s) 501
XmnI GAANNNNTTC 1 cut(s) 998
XspI CTAG 2 cut(s) 201, 774
ZraI GACGTC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.