Rroxscaffold_3G00220890

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
3501920 .. 3503690
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220890.1

Sequence Viewer

Length: 1005 bp
ATGTACGAAGCTACATCAAAGTGCTCTTGCCTGTTCATTCATCTCCTTGATGTTGCGAAAATCTTCGACCTGGTCTCGGACACCAAGACCCTCATTCGCTGCCTCGCCGTTTCGAAACGCTTCAACTCCCTCGTCCCCCACACCGACTCCCTAGTCCTCACCGTTGACCGCGTCATCTCCTCCGACTCCGACTCTGATTCAGACGACGACGTTTCCAACCTCCTCGCCTCCGCCTTCCGCTACATCCTCAAGTCTCTCCACAGCCTCGTCTCCCCCAAGCCCAACAACAACAACAACAACAACCCGACCCGGACCCGGATCCCCAACTGCCCCGCCCAGATCCTCCGCTGTTTCCACCGCGTCAAGCGCCTCGCGATCGACCTCCCCTCCGGCGACCTCCGCCTCGAGAAGGGGACCGTTCTCAAGTGGAGAGCCGAGTTCGGGAAAACCCTCCGGACCTGCGTCATCCTAGGGTTCCGATCCGTCGGGGAGACTCCGTCGCCGGTGACGGGCGGAGCTGAGCCCGACTTCGCCGGCGGGCTGAAGGTGCGGGTGGTGTGGACGATCAGTGCTCTGATCGCGGCGTCGGCGAGGCACTATTTGCTGAAGGAGGTGGTGAGGGAGCAGAGCGGGCTCGAATGTCTGGTTCTGAGGGACAGAGAGGCGGAGGGGACGGTGGTGATGGAGAAGGAGGGGTTGGGGGAGTGTAGAGAAGAAGGTGAGGAGTTTGCTGATGAGGAGGAGGGGTTGGATAGGTGCAGGACTAGAGTGCCTAGTGTGAGGATGAGGATGAGGCATGTGCCGAGATTGGGGCTCAAAGGCGGGCTTTGTGTCGAGGGTGCGACGCTCGTGGTGGTCCGGCCCAGTTTGGGAGGCGGCGGCGGCGACATGGCGGTGGAGGATGGGGAATTGGCGTTGAGGGCATTTGGGAATGGTTTGTATGGGGAGGTTGCGCAGAAGCTGCTCAAGGCCAGAAGCTATTTGCTGGAAATGAACTCATTCTGA

Protein Analysis

334

Amino Acids

36.7

Weight (kDa)

7.54

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
Acc16I TGCGCA 1 cut(s) 954
Acc36I ACCTGC 1 cut(s) 467
AccBSI CCGCTC 1 cut(s) 630
AccII CGCG 4 cut(s) 171, 360, 374, 581
AccIII TCCGGA 1 cut(s) 453
AclWI GGATC 4 cut(s) 313, 326, 334, 474
AcuI CTGAAG 2 cut(s) 563, 626
AcyI GRCGYC 1 cut(s) 584
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 7 cut(s) 76, 315, 409, 441, 509, 809, 869
AgsI TTSAA 1 cut(s) 124
AjnI CCWGG 1 cut(s) 69
AjuI GAANNNNNNNTTGG 2 cut(s) 680, 712
AluBI AGCT 4 cut(s) 11, 518, 961, 978
AluI AGCT 4 cut(s) 11, 518, 961, 978
Alw21I GWGCWC 2 cut(s) 26, 574
Alw26I GTCTC 4 cut(s) 79, 258, 274, 485
AlwI GGATC 4 cut(s) 313, 326, 334, 474
AlwNI CAGNNNCTG 1 cut(s) 961
Ama87I CYCGRG 1 cut(s) 404
Aor13HI TCCGGA 1 cut(s) 453
AoxI GGCC 2 cut(s) 860, 969
ApeKI GCWGC 2 cut(s) 99, 961
Asp700I GAANNNNTTC 3 cut(s) 62, 119, 998
AspA2I CCTAGG 1 cut(s) 469
AspLEI GCGC 2 cut(s) 369, 955
AspS9I GGNCC 5 cut(s) 312, 414, 456, 856, 861
AsuC2I CCSGG 2 cut(s) 310, 316
AsuHPI GGTGA 5 cut(s) 151, 517, 628, 691, 731
AsuII TTCGAA 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 404
AvaII GGWCC 4 cut(s) 312, 414, 456, 856
AvrII CCTAGG 1 cut(s) 469
BamHI GGATCC 1 cut(s) 318
BanII GRGCYC 3 cut(s) 525, 636, 816
BauI CACGAG 1 cut(s) 848
Bbv12I GWGCWC 2 cut(s) 26, 574
BbvI GCAGC 2 cut(s) 86, 948
BccI CCATC 2 cut(s) 676, 896
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 71
BcnI CCSGG 2 cut(s) 310, 316
BcoDI GTCTC 4 cut(s) 79, 258, 274, 485
BfaI CTAG 4 cut(s) 152, 470, 765, 774
BfoI RGCGCY 1 cut(s) 370
BfuAI ACCTGC 1 cut(s) 467
BisI GCNGC 6 cut(s) 100, 582, 877, 880, 883, 962
BlnI CCTAGG 1 cut(s) 469
BlpI GCTNAGC 1 cut(s) 519
BlsI GCNGC 6 cut(s) 101, 583, 878, 881, 884, 963
Bme1390I CCNGG 3 cut(s) 71, 310, 316
Bme18I GGWCC 4 cut(s) 312, 414, 456, 856
BmeT110I CYCGRG 1 cut(s) 404
BmgT120I GGNCC 5 cut(s) 312, 414, 456, 856, 861
BmiI GGNNCC 4 cut(s) 314, 320, 415, 476
BmrFI CCNGG 3 cut(s) 71, 310, 316
BmrI ACTGGG 1 cut(s) 858
BmuI ACTGGG 1 cut(s) 858
BoxI GACNNNNGTC 1 cut(s) 461
Bpu1102I GCTNAGC 1 cut(s) 519
Bpu14I TTCGAA 1 cut(s) 113
BpuEI CTTGAG 3 cut(s) 233, 407, 950
BpuMI CCSGG 2 cut(s) 310, 316
BsaHI GRCGYC 1 cut(s) 584
BsaI GGTCTC 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 469
BsaWI WCCGGW 1 cut(s) 453
BsaXI ACNNNNNCTCC 8 cut(s) 131, 161, 371, 401, 482, 512, 731, 761
Bsc4I CCNNNNNNNGG 7 cut(s) 76, 315, 409, 441, 509, 809, 869
Bse118I RCCGGY 2 cut(s) 502, 533
Bse1I ACTGG 1 cut(s) 864
BseAI TCCGGA 1 cut(s) 453
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 469
BseGI GGATG 5 cut(s) 243, 465, 789, 795, 907
BseLI CCNNNNNNNGG 7 cut(s) 76, 315, 409, 441, 509, 809, 869
BseMII CTCAG 2 cut(s) 510, 641
BseNI ACTGG 1 cut(s) 864
BseRI GAGGAG 5 cut(s) 169, 212, 737, 752, 755
BseXI GCAGC 2 cut(s) 86, 948
BsgI GTGCAG 1 cut(s) 778
Bsh1236I CGCG 4 cut(s) 171, 360, 374, 581
Bsh1285I CGRYCG 1 cut(s) 378
BshFI GGCC 2 cut(s) 862, 971
BsiEI CGRYCG 1 cut(s) 378
BsiHKAI GWGCWC 2 cut(s) 26, 574
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 7 cut(s) 310, 316, 390, 454, 503, 534, 859
BslFI GGGAC 4 cut(s) 119, 427, 668, 685
BslI CCNNNNNNNGG 7 cut(s) 76, 315, 409, 441, 509, 809, 869
BsmAI GTCTC 4 cut(s) 79, 258, 274, 485
BsmBI CGTCTC 1 cut(s) 274
BsmFI GGGAC 4 cut(s) 119, 427, 668, 685
BsnI GGCC 2 cut(s) 862, 971
Bso31I GGTCTC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 404
Bsp119I TTCGAA 1 cut(s) 113
Bsp1286I GDGCHC 5 cut(s) 26, 525, 574, 636, 816
Bsp13I TCCGGA 1 cut(s) 453
Bsp143I GATC 6 cut(s) 318, 339, 375, 479, 564, 576
Bsp1720I GCTNAGC 1 cut(s) 519
Bsp68I TCGCGA 1 cut(s) 374
BspANI GGCC 2 cut(s) 862, 971
BspCNI CTCAG 2 cut(s) 511, 642
BspEI TCCGGA 1 cut(s) 453
BspFNI CGCG 4 cut(s) 171, 360, 374, 581
BspLI GGNNCC 4 cut(s) 314, 320, 415, 476
BspMI ACCTGC 1 cut(s) 467
BspPI GGATC 4 cut(s) 313, 326, 334, 474
BspT104I TTCGAA 1 cut(s) 113
BspTNI GGTCTC 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 630
BsrFI RCCGGY 2 cut(s) 502, 533
BsrI ACTGG 1 cut(s) 864
BssAI RCCGGY 2 cut(s) 502, 533
BssECI CCNNGG 1 cut(s) 469
BssMI GATC 6 cut(s) 318, 339, 375, 479, 564, 576
BssNI GRCGYC 1 cut(s) 584
BssSI CACGAG 1 cut(s) 848
BssT1I CCWWGG 1 cut(s) 469
Bst2BI CACGAG 1 cut(s) 848
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 3 cut(s) 163, 418, 676
BstACI GRCGYC 1 cut(s) 584
BstAPI GCANNNNNTGC 2 cut(s) 601, 961
BstBI TTCGAA 1 cut(s) 113
BstC8I GCNNGC 4 cut(s) 535, 539, 632, 824
BstDEI CTNAG 2 cut(s) 519, 650
BstENI CCTNNNNNAGG 1 cut(s) 407
BstF5I GGATG 5 cut(s) 243, 465, 789, 795, 907
BstFNI CGCG 4 cut(s) 171, 360, 374, 581
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 2 cut(s) 369, 955
BstKTI GATC 6 cut(s) 321, 342, 378, 482, 567, 579
BstMAI GTCTC 4 cut(s) 79, 258, 274, 485
BstMBI GATC 6 cut(s) 318, 339, 375, 479, 564, 576
BstMCI CGRYCG 1 cut(s) 378
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 800
BstPAI GACNNNNGTC 1 cut(s) 461
BstSCI CCNGG 3 cut(s) 69, 308, 314
BstUI CGCG 4 cut(s) 171, 360, 374, 581
BstV1I GCAGC 2 cut(s) 86, 948
BstX2I RGATCY 2 cut(s) 318, 339
BstYI RGATCY 2 cut(s) 318, 339
BsuRI GGCC 2 cut(s) 862, 971
BtsCI GGATG 5 cut(s) 243, 465, 789, 795, 907
BtsIMutI CAGTG 1 cut(s) 574
BtuMI TCGCGA 1 cut(s) 374
BveI ACCTGC 1 cut(s) 467
Cac8I GCNNGC 4 cut(s) 535, 539, 632, 824
CaiI CAGNNNCTG 1 cut(s) 961
CfoI GCGC 2 cut(s) 369, 955
Cfr10I RCCGGY 2 cut(s) 502, 533
Cfr13I GGNCC 5 cut(s) 312, 414, 456, 856, 861
CseI GACGC 5 cut(s) 160, 349, 451, 573, 853
CsiI ACCWGGT 1 cut(s) 69
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 797, 889
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 519, 650
DpnI GATC 6 cut(s) 320, 341, 377, 481, 566, 578
DpnII GATC 6 cut(s) 318, 339, 375, 479, 564, 576
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
EciI GGCGGA 4 cut(s) 220, 389, 528, 680
Eco130I CCWWGG 1 cut(s) 469
Eco24I GRGCYC 3 cut(s) 525, 636, 816
Eco31I GGTCTC 1 cut(s) 79
Eco47I GGWCC 4 cut(s) 312, 414, 456, 856
Eco57I CTGAAG 2 cut(s) 563, 626
Eco88I CYCGRG 1 cut(s) 404
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 469
EcoT38I GRGCYC 3 cut(s) 525, 636, 816
ErhI CCWWGG 1 cut(s) 469
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 2 cut(s) 800, 892
FaiI YATR 3 cut(s) 798, 890, 942
FalI AAGNNNNNCTT 2 cut(s) 810, 842
FaqI GGGAC 4 cut(s) 119, 427, 668, 685
FatI CATG 2 cut(s) 796, 888
FauI CCCGC 5 cut(s) 340, 530, 543, 623, 815
Fnu4HI GCNGC 6 cut(s) 100, 582, 877, 880, 883, 962
FokI GGATG 5 cut(s) 230, 452, 796, 802, 914
FriOI GRGCYC 3 cut(s) 525, 636, 816
Fsp4HI GCNGC 6 cut(s) 100, 582, 877, 880, 883, 962
FspBI CTAG 4 cut(s) 152, 470, 765, 774
FspI TGCGCA 1 cut(s) 954
GlaI GCGC 2 cut(s) 368, 954
GluI GCNGC 6 cut(s) 100, 582, 877, 880, 883, 962
HaeII RGCGCY 1 cut(s) 370
HaeIII GGCC 2 cut(s) 862, 971
HapII CCGG 7 cut(s) 310, 316, 390, 454, 503, 534, 859
HgaI GACGC 5 cut(s) 160, 349, 451, 573, 853
HhaI GCGC 2 cut(s) 369, 955
Hin1I GRCGYC 1 cut(s) 584
Hin1II CATG 2 cut(s) 800, 892
Hin6I GCGC 2 cut(s) 367, 953
HinP1I GCGC 2 cut(s) 367, 953
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 5 cut(s) 146, 185, 191, 197, 493
HpaII CCGG 7 cut(s) 310, 316, 390, 454, 503, 534, 859
HphI GGTGA 5 cut(s) 151, 517, 628, 691, 731
Hpy166II GTNNAC 2 cut(s) 166, 561
Hpy188I TCNGA 9 cut(s) 79, 184, 190, 196, 202, 479, 576, 651, 1004
Hpy188III TCNNGA 4 cut(s) 373, 406, 442, 454
Hpy8I GTNNAC 2 cut(s) 166, 561
Hpy99I CGWCG 6 cut(s) 209, 212, 488, 502, 589, 847
HpyAV CCTTC 6 cut(s) 244, 403, 538, 601, 682, 710
HpyCH4III ACNGT 3 cut(s) 163, 418, 676
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 1 cut(s) 759
HpyF3I CTNAG 2 cut(s) 519, 650
HpySE526I ACGT 1 cut(s) 210
Hsp92I GRCGYC 1 cut(s) 584
Hsp92II CATG 2 cut(s) 800, 892
HspAI GCGC 2 cut(s) 367, 953
Kpn2I TCCGGA 1 cut(s) 453
KroI GCCGGC 1 cut(s) 533
KroNI GCCGGC 1 cut(s) 535
Kzo9I GATC 6 cut(s) 318, 339, 375, 479, 564, 576
LmnI GCTCC 2 cut(s) 515, 622
Lsp1109I GCAGC 2 cut(s) 86, 948
MabI ACCWGGT 1 cut(s) 69
MaeI CTAG 4 cut(s) 152, 470, 765, 774
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 505
MalI GATC 6 cut(s) 320, 341, 377, 481, 566, 578
MbiI CCGCTC 1 cut(s) 630
MboI GATC 6 cut(s) 318, 339, 375, 479, 564, 576
MboII GAAGA 2 cut(s) 55, 725
MflI RGATCY 2 cut(s) 318, 339
MhlI GDGCHC 5 cut(s) 26, 525, 574, 636, 816
MluCI AATT 1 cut(s) 908
MlyI GAGTC 4 cut(s) 140, 179, 185, 487
MmeI TCCRAC 4 cut(s) 207, 213, 240, 729
MreI CGCCGGCG 1 cut(s) 533
MroI TCCGGA 1 cut(s) 453
MroNI GCCGGC 1 cut(s) 533
MroXI GAANNNNTTC 3 cut(s) 62, 119, 998
MslI CAYNNNNRTG 2 cut(s) 19, 893
MspA1I CMGCKG 1 cut(s) 348
MspI CCGG 7 cut(s) 310, 316, 390, 454, 503, 534, 859
MspR9I CCNGG 3 cut(s) 71, 310, 316
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 4 cut(s) 171, 360, 374, 581
NaeI GCCGGC 1 cut(s) 535
NciI CCSGG 2 cut(s) 310, 316
NdeII GATC 6 cut(s) 318, 339, 375, 479, 564, 576
NgoMIV GCCGGC 1 cut(s) 533
NlaIII CATG 2 cut(s) 800, 892
NlaIV GGNNCC 4 cut(s) 314, 320, 415, 476
NmeAIII GCCGAG 2 cut(s) 460, 828
NmuCI GTSAC 1 cut(s) 505
NruI TCGCGA 1 cut(s) 374
NsbI TGCGCA 1 cut(s) 954
NspI RCATGY 1 cut(s) 800
NspV TTCGAA 1 cut(s) 113
PaeR7I CTCGAG 1 cut(s) 404
PdiI GCCGGC 1 cut(s) 535
PdmI GAANNNNTTC 3 cut(s) 62, 119, 998
PfeI GAWTC 1 cut(s) 197
PflFI GACNNNGTC 3 cut(s) 71, 170, 496
PkrI GCNGC 6 cut(s) 101, 583, 878, 881, 884, 963
Ple19I CGATCG 1 cut(s) 378
PleI GAGTC 4 cut(s) 140, 179, 185, 487
PpsI GAGTC 4 cut(s) 140, 179, 185, 487
PshAI GACNNNNGTC 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 4 cut(s) 314, 320, 415, 476
PspPI GGNCC 5 cut(s) 312, 414, 456, 856, 861
PstNI CAGNNNCTG 1 cut(s) 961
PsuI RGATCY 2 cut(s) 318, 339
PsyI GACNNNGTC 3 cut(s) 71, 170, 496
PvuI CGATCG 1 cut(s) 378
RruI TCGCGA 1 cut(s) 374
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 19, 893
SatI GCNGC 6 cut(s) 100, 582, 877, 880, 883, 962
Sau3AI GATC 6 cut(s) 318, 339, 375, 479, 564, 576
Sau96I GGNCC 5 cut(s) 312, 414, 456, 856, 861
SchI GAGTC 4 cut(s) 140, 179, 185, 487
ScrFI CCNGG 3 cut(s) 71, 310, 316
SduI GDGCHC 5 cut(s) 26, 525, 574, 636, 816
SexAI ACCWGGT 1 cut(s) 69
Sfr274I CTCGAG 1 cut(s) 404
SfuI TTCGAA 1 cut(s) 113
SgrAI CRCCGGYG 2 cut(s) 502, 533
SinI GGWCC 4 cut(s) 312, 414, 456, 856
SlaI CTCGAG 1 cut(s) 404
SmiMI CAYNNNNRTG 2 cut(s) 19, 893
SmlI CTYRAG 4 cut(s) 248, 404, 422, 965
SmoI CTYRAG 4 cut(s) 248, 404, 422, 965
Sse9I AATT 1 cut(s) 908
SspMI CTAG 4 cut(s) 152, 470, 765, 774
StyD4I CCNGG 3 cut(s) 69, 308, 314
StyI CCWWGG 1 cut(s) 469
TaaI ACNGT 3 cut(s) 163, 418, 676
TaiI ACGT 1 cut(s) 213
TaqI TCGA 6 cut(s) 66, 113, 378, 405, 636, 834
TasI AATT 1 cut(s) 908
TauI GCSGC 4 cut(s) 584, 879, 882, 885
TfiI GAWTC 1 cut(s) 197
TscAI CASTG 1 cut(s) 574
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 2 cut(s) 99, 961
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 2 cut(s) 25, 29
TspGWI ACGGA 2 cut(s) 472, 486
TspRI CASTG 1 cut(s) 574
Tth111I GACNNNGTC 3 cut(s) 71, 170, 496
VpaK11BI GGWCC 4 cut(s) 312, 414, 456, 856
XagI CCTNNNNNAGG 1 cut(s) 407
XceI RCATGY 1 cut(s) 800
XhoI CTCGAG 1 cut(s) 404
XmaJI CCTAGG 1 cut(s) 469
XmnI GAANNNNTTC 3 cut(s) 62, 119, 998
XspI CTAG 4 cut(s) 152, 470, 765, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.