Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009231

Physical Location & Seq

Genomic Coordinates Reverse (-)

8135180 .. 8136034

Gene Structure 855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22985.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAAACGAATTGTTCGAATTTCATTCACAGACATGGAAGCAACCGATTCTTCAAGCAGCGAAGACGAGTCACCACCGTCATCACGCCGTCGAGGTAAGAAGCTAGTCAAGGAAATCGTAATCGATCATTCTGATCCCCCGGAGGTCGGAAAAACTCGGTTCAAAATCAGGATTCCGGCGAGTTTACTTGCTGCGAGGAATACGACGGCGAATAAGAAGAAGTTCCGTGGCGTGAGGCAGAGACCATGGGGGAAGTGGGCGGCTGAGATTAGATGTGGTAGAGTTAAAGGAAGACCTGAACGAATTTGGCTTGGAACTTTTGAAACAGCTGAAGAAGCTGCTCTTGCTTATGATAACGCTGCGATTCAGTTGATTGGACCTGATGCGCCGACTAATTTTGGCCGTCCTGATGTTGATTCTGCGGTGGTGAAAAAGCAAGATTCTGATGCTAGTGGTGGTGCTTCTGAAGAAGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

159

Amino Acids

17.54

Weight (kDa)

9.62

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	74 - 126	1.7e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22985 AT1G71130
fragaria_vesca	FvH4_3g40810
malus_domestica	MD03G1049900.v1.1 MD09G1161000.v1.1 MD11G1052100.v1.1 MD17G1146800.v1.1
prunus_persica	Prupe.3G019900_v2.0.a1 Prupe.6G039700_v2.0.a1 Prupe.7G060700_v2.0.a1
pyrus_communis	pycom03g03950 pycom11g04250
rosa_chinensis	RchiOBHm_Chr5g0073531
rosa_laevigata	RLG00000036391
rosa_multiflora	Rmu_co8467529.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007740
rosa_rugosa	Rorug05G0424500
rosa_samantha	Rh5AG481600 Rh5BG502300 Rh5CG525500 Rh5DG514600
rosa_wichuraiana	Rw5G044740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	260, 422
AclWI	GGATC	1 cut(s)	128
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	2 cut(s)	18, 303
AcuI	CTGAAG	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	54, 163, 323
AluBI	AGCT	3 cut(s)	103, 329, 338
AluI	AGCT	3 cut(s)	103, 329, 338
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	1 cut(s)	400
ApeKI	GCWGC	4 cut(s)	57, 191, 338, 359
ApoI	RAATTY	2 cut(s)	18, 303
Asp700I	GAANNNNTTC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	1 cut(s)	377
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	63, 439
AsuII	TTCGAA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	377
BbsI	GAAGAC	2 cut(s)	69, 298
BbvI	GCAGC	4 cut(s)	69, 178, 325, 346
BceAI	ACGGC	3 cut(s)	72, 222, 387
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	2 cut(s)	104, 450
BisI	GCNGC	5 cut(s)	58, 192, 261, 339, 360
BlsI	GCNGC	5 cut(s)	59, 193, 262, 340, 361
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	377
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	2 cut(s)	373, 436
BpiI	GAAGAC	2 cut(s)	69, 298
Bpu14I	TTCGAA	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	3 cut(s)	138, 226, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	138, 226, 245
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	255
BseXI	GCAGC	4 cut(s)	69, 178, 325, 346
BshFI	GGCC	1 cut(s)	402
BshVI	ATCGAT	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	140, 176
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	402
Bso31I	GGTCTC	1 cut(s)	235
Bsp119I	TTCGAA	1 cut(s)	16
Bsp143I	GATC	2 cut(s)	124, 133
Bsp19I	CCATGG	1 cut(s)	245
BspACI	CCGC	2 cut(s)	260, 422
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	123
BspPI	GGATC	1 cut(s)	128
BspT104I	TTCGAA	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	235
BssECI	CCNNGG	3 cut(s)	138, 226, 245
BssMI	GATC	2 cut(s)	124, 133
BssT1I	CCWWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	78
BstBI	TTCGAA	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	2 cut(s)	226, 245
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	2 cut(s)	127, 136
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	2 cut(s)	124, 133
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 344
BstSCI	CCNGG	1 cut(s)	138
BstV1I	GCAGC	4 cut(s)	69, 178, 325, 346
BstV2I	GAAGAC	2 cut(s)	69, 298
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	402
BsuTUI	ATCGAT	1 cut(s)	123
BtgI	CCRYGG	2 cut(s)	226, 245
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	1 cut(s)	377
ClaI	ATCGAT	1 cut(s)	123
CviAII	CATG	2 cut(s)	34, 246
CviJI	RGCY	6 cut(s)	103, 263, 310, 329, 338, 402
CviKI_1	RGCY	6 cut(s)	103, 263, 310, 329, 338, 402
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	126, 135
DpnII	GATC	2 cut(s)	124, 133
EaeI	YGGCCR	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	245
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	2 cut(s)	37, 249
FaiI	YATR	3 cut(s)	35, 247, 351
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FatI	CATG	2 cut(s)	33, 245
Fnu4HI	GCNGC	5 cut(s)	58, 192, 261, 339, 360
Fsp4HI	GCNGC	5 cut(s)	58, 192, 261, 339, 360
FspBI	CTAG	2 cut(s)	104, 450
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	5 cut(s)	58, 192, 261, 339, 360
HaeIII	GGCC	1 cut(s)	402
HapII	CCGG	2 cut(s)	140, 176
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	2 cut(s)	37, 249
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HinfI	GANTC	6 cut(s)	47, 68, 172, 364, 416, 440
HpaII	CCGG	2 cut(s)	140, 176
HphI	GGTGA	2 cut(s)	63, 439
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	4 cut(s)	133, 149, 445, 466
Hpy188III	TCNNGA	2 cut(s)	169, 407
Hpy8I	GTNNAC	1 cut(s)	185
Hpy99I	CGWCG	2 cut(s)	93, 208
HpyCH4III	ACNGT	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 344
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	37, 249
HspAI	GCGC	1 cut(s)	386
Kzo9I	GATC	2 cut(s)	124, 133
LpnPI	CCDG	6 cut(s)	153, 154, 189, 309, 393, 420
Lsp1109I	GCAGC	4 cut(s)	69, 178, 325, 346
LweI	GCATC	2 cut(s)	373, 436
MaeI	CTAG	2 cut(s)	104, 450
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	2 cut(s)	126, 135
MboI	GATC	2 cut(s)	124, 133
MboII	GAAGA	6 cut(s)	42, 74, 229, 303, 344, 479
MluCI	AATT	4 cut(s)	9, 18, 303, 394
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	4 cut(s)	86, 136, 189, 228
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	2 cut(s)	140, 176
MspR9I	CCNGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	335, 344
NciI	CCSGG	1 cut(s)	140
NcoI	CCATGG	1 cut(s)	245
NdeII	GATC	2 cut(s)	124, 133
NlaIII	CATG	2 cut(s)	37, 249
NmuCI	GTSAC	1 cut(s)	69
NspV	TTCGAA	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	5 cut(s)	47, 172, 364, 416, 440
PkrI	GCNGC	5 cut(s)	59, 193, 262, 340, 361
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	377
PvuII	CAGCTG	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	5 cut(s)	58, 192, 261, 339, 360
Sau3AI	GATC	2 cut(s)	124, 133
Sau96I	GGNCC	1 cut(s)	377
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	7 cut(s)	97, 105, 147, 298, 331, 340, 382
SfaNI	GCATC	2 cut(s)	373, 436
SfuI	TTCGAA	1 cut(s)	16
SinI	GGWCC	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	32
Sse9I	AATT	4 cut(s)	9, 18, 303, 394
SsiI	CCGC	2 cut(s)	260, 422
SspMI	CTAG	2 cut(s)	104, 450
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	1 cut(s)	78
TaqI	TCGA	3 cut(s)	16, 91, 123
TasI	AATT	4 cut(s)	9, 18, 303, 394
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	5 cut(s)	47, 172, 364, 416, 440
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	4 cut(s)	57, 191, 338, 359
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	2 cut(s)	12, 17
TspGWI	ACGGA	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	2 cut(s)	18, 303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	2 cut(s)	104, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.