Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009231

Physical Location & Seq

Genomic Coordinates Forward (+)

26822517 .. 26823671

Gene Structure 1155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G71130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAAGCGTATTATCAGAATCTCATTCACCGACGCAGAAGCCACCGATTCTTCTAGCGACGAAGACACGGAGGAGCGTGGAGGAGCATCCCAGACTCGGCGCCGTGGGAAACGCCTCGTTAAAGAGATCGTAATCGATCCTTCCGATTCCGCCGATAAACTCGATGTCTGCAAAACACGGTTCAAAATCAGGATCCCGGCGGAATTTCTCAAGACGGCGAAAACGGAGAAGAAATATCGTGGAGTGAGGCAGAGGCCGTGGGGGAAGTGGGTGGCGGAGATCAGATGTGGAAGAGGAGCTTGTAAAGGACGACGTGATCGTCTCTGGCTGGGTACTTTTAACACTGCTGAGGAAGCTGCTCTAGCTTATGATAACGCTTCAATTAAGCTGATTGGACCTCACGCGCCGACCAATTTTGGTTTGCCGGCGGAGAATCAAGAGGATAAGACGGTGATTGGAGCTTCTGAGGTTGCTAGAGGCGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

161

Amino Acids

17.95

Weight (kDa)

9.6

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	78 - 132	9e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22985 AT1G71130
fragaria_vesca	FvH4_3g40810
malus_domestica	MD03G1049900.v1.1 MD09G1161000.v1.1 MD11G1052100.v1.1 MD17G1146800.v1.1
prunus_persica	Prupe.3G019900_v2.0.a1 Prupe.6G039700_v2.0.a1 Prupe.7G060700_v2.0.a1
pyrus_communis	pycom03g03950 pycom11g04250
rosa_chinensis	RchiOBHm_Chr5g0073531
rosa_laevigata	RLG00000036391
rosa_multiflora	Rmu_co8467529.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007740
rosa_rugosa	Rorug05G0424500
rosa_samantha	Rh5AG481600 Rh5BG502300 Rh5CG525500 Rh5DG514600
rosa_wichuraiana	Rw5G044740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	99
AccII	CGCG	2 cut(s)	404, 482
AciI	CCGC	4 cut(s)	150, 200, 275, 428
AclWI	GGATC	3 cut(s)	131, 187, 200
AcsI	RAATTY	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	100
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	184, 381
AjiI	CACGTC	1 cut(s)	314
AluBI	AGCT	5 cut(s)	299, 356, 365, 388, 461
AluI	AGCT	5 cut(s)	299, 356, 365, 388, 461
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	3 cut(s)	131, 187, 200
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	203
AspLEI	GCGC	3 cut(s)	102, 406, 482
AspS9I	GGNCC	1 cut(s)	395
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	19, 463
AvaII	GGWCC	1 cut(s)	395
BamHI	GGATCC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	343
BceAI	ACGGC	3 cut(s)	87, 231, 241
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	326
BfaI	CTAG	3 cut(s)	54, 362, 474
BfoI	RGCGCY	1 cut(s)	103
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	395
BmgBI	CACGTC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	2 cut(s)	101, 194
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	95
BpiI	GAAGAC	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	103, 257
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse118I	RCCGGY	1 cut(s)	424
Bse8I	GATNNNNATC	1 cut(s)	131
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	103, 257
BseGI	GGATG	1 cut(s)	86
BseJI	GATNNNNATC	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	2 cut(s)	339, 456
BseRI	GAGGAG	3 cut(s)	86, 96, 309
BseXI	GCAGC	1 cut(s)	343
BseYI	CCCAGC	1 cut(s)	328
Bsh1236I	CGCG	2 cut(s)	404, 482
BshFI	GGCC	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	99
BshVI	ATCGAT	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	197, 425
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	326
BsmBI	CGTCTC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	256
Bsp143I	GATC	5 cut(s)	126, 136, 192, 279, 316
BspACI	CCGC	4 cut(s)	150, 200, 275, 428
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	2 cut(s)	340, 457
BspDI	ATCGAT	1 cut(s)	135
BspFNI	CGCG	2 cut(s)	404, 482
BspLI	GGNNCC	2 cut(s)	101, 194
BspPI	GGATC	3 cut(s)	131, 187, 200
BspT107I	GGYRCC	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	424
BssAI	RCCGGY	1 cut(s)	424
BssECI	CCNNGG	2 cut(s)	103, 257
BssMI	GATC	5 cut(s)	126, 136, 192, 279, 316
BssNI	GRCGYC	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	180, 451
Bst6I	CTCTTC	1 cut(s)	286
BstACI	GRCGYC	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	2 cut(s)	348, 465
BstDSI	CCRYGG	2 cut(s)	103, 257
BstF5I	GGATG	1 cut(s)	86
BstFNI	CGCG	2 cut(s)	404, 482
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	3 cut(s)	102, 406, 482
BstKTI	GATC	5 cut(s)	129, 139, 195, 282, 319
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	5 cut(s)	126, 136, 192, 279, 316
BstMWI	GCNNNNNNNGC	3 cut(s)	353, 362, 479
BstSCI	CCNGG	1 cut(s)	195
BstUI	CGCG	2 cut(s)	404, 482
BstV1I	GCAGC	1 cut(s)	343
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	256
BsuTUI	ATCGAT	1 cut(s)	135
BtgI	CCRYGG	2 cut(s)	103, 257
BtrI	CACGTC	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	86
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	426
CfoI	GCGC	3 cut(s)	102, 406, 482
Cfr10I	RCCGGY	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	395
ClaI	ATCGAT	1 cut(s)	135
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	333
CviJI	RGCY	8 cut(s)	41, 256, 299, 328, 356, 365, 388, 461
CviKI_1	RGCY	8 cut(s)	41, 256, 299, 328, 356, 365, 388, 461
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	2 cut(s)	348, 465
DinI	GGCGCC	1 cut(s)	101
DpnI	GATC	5 cut(s)	128, 138, 194, 281, 318
DpnII	GATC	5 cut(s)	126, 136, 192, 279, 316
DrdI	GACNNNNNNGTC	1 cut(s)	318
DseDI	GACNNNNNNGTC	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
EciI	GGCGGA	4 cut(s)	139, 215, 290, 443
Eco47I	GGWCC	1 cut(s)	395
EgeI	GGCGCC	1 cut(s)	101
EheI	GGCGCC	1 cut(s)	101
Esp3I	CGTCTC	1 cut(s)	326
FaiI	YATR	1 cut(s)	369
FalI	AAGNNNNNCTT	2 cut(s)	283, 315
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	357
FspBI	CTAG	3 cut(s)	54, 362, 474
GlaI	GCGC	3 cut(s)	101, 405, 481
GluI	GCNGC	1 cut(s)	357
GsaI	CCCAGC	1 cut(s)	332
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	2 cut(s)	197, 425
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	3 cut(s)	102, 406, 482
Hin1I	GRCGYC	1 cut(s)	100
Hin6I	GCGC	3 cut(s)	100, 404, 480
HinP1I	GCGC	3 cut(s)	100, 404, 480
HinfI	GANTC	5 cut(s)	18, 47, 94, 146, 433
HpaII	CCGG	2 cut(s)	197, 425
HphI	GGTGA	2 cut(s)	19, 463
Hpy188I	TCNGA	4 cut(s)	17, 145, 284, 466
Hpy188III	TCNNGA	3 cut(s)	190, 211, 437
Hpy99I	CGWCG	3 cut(s)	35, 62, 315
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	2 cut(s)	180, 451
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	3 cut(s)	353, 362, 479
HpyF3I	CTNAG	2 cut(s)	348, 465
HpySE526I	ACGT	1 cut(s)	313
Hsp92I	GRCGYC	1 cut(s)	100
HspAI	GCGC	3 cut(s)	100, 404, 480
KasI	GGCGCC	1 cut(s)	99
KroI	GCCGGC	1 cut(s)	424
KroNI	GCCGGC	1 cut(s)	426
Kzo9I	GATC	5 cut(s)	126, 136, 192, 279, 316
LmnI	GCTCC	4 cut(s)	73, 83, 296, 458
LpnPI	CCDG	6 cut(s)	104, 175, 210, 310, 314, 438
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	1 cut(s)	95
MaeI	CTAG	3 cut(s)	54, 362, 474
MaeII	ACGT	1 cut(s)	313
MalI	GATC	5 cut(s)	128, 138, 194, 281, 318
MboI	GATC	5 cut(s)	126, 136, 192, 279, 316
MboII	GAAGA	4 cut(s)	42, 74, 241, 303
MflI	RGATCY	1 cut(s)	192
MluCI	AATT	3 cut(s)	203, 381, 412
Mly113I	GGCGCC	1 cut(s)	100
MlyI	GAGTC	1 cut(s)	88
MroNI	GCCGGC	1 cut(s)	424
MseI	TTAA	3 cut(s)	120, 339, 384
MspI	CCGG	2 cut(s)	197, 425
MspR9I	CCNGG	1 cut(s)	197
MvnI	CGCG	2 cut(s)	404, 482
MwoI	GCNNNNNNNGC	3 cut(s)	353, 362, 479
NaeI	GCCGGC	1 cut(s)	426
NarI	GGCGCC	1 cut(s)	100
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	5 cut(s)	126, 136, 192, 279, 316
NgoMIV	GCCGGC	1 cut(s)	424
NlaIV	GGNNCC	2 cut(s)	101, 194
NmeAIII	GCCGAG	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 316
PdiI	GCCGGC	1 cut(s)	426
PfeI	GAWTC	4 cut(s)	18, 47, 146, 433
PkrI	GCNGC	1 cut(s)	358
PleI	GAGTC	1 cut(s)	88
PluTI	GGCGCC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	88
PspFI	CCCAGC	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	101, 194
PspPI	GGNCC	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	192
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	120, 339, 384
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	5 cut(s)	126, 136, 192, 279, 316
Sau96I	GGNCC	1 cut(s)	395
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	197
SetI	ASST	8 cut(s)	301, 316, 358, 367, 390, 400, 463, 471
SfaNI	GCATC	1 cut(s)	95
SfoI	GGCGCC	1 cut(s)	101
SinI	GGWCC	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	203, 381, 412
SsiI	CCGC	4 cut(s)	150, 200, 275, 428
SspDI	GGCGCC	1 cut(s)	99
SspMI	CTAG	3 cut(s)	54, 362, 474
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	180, 451
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	2 cut(s)	135, 162
TasI	AATT	3 cut(s)	203, 381, 412
TfiI	GAWTC	4 cut(s)	18, 47, 146, 433
Tru1I	TTAA	3 cut(s)	120, 339, 384
Tru9I	TTAA	3 cut(s)	120, 339, 384
TscAI	CASTG	1 cut(s)	349
TseI	GCWGC	1 cut(s)	356
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	83, 239
TspRI	CASTG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	395
XapI	RAATTY	1 cut(s)	203
XspI	CTAG	3 cut(s)	54, 362, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.