Prupe.7G060700_v2.0.a1

Pathogenesis-related genes transcriptional activator PTI6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0009231
Physical Location & Seq
Forward (+)
9997042 .. 9997748
707 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G060700.1

Sequence Viewer

Length: 588 bp
ATGGTCAAATTTTCGGAGCAAGTAACCACCATGATCAAGCTCATCACCCACGAAAACCAAAACTCGCCTGTGAACCCGACCCATCTCCCACCAAAGCTCGTCCGGATCATACTCACAGACGCCGACGCCACCGACTCCTCCAGCGACGAAGAAGACAGCGGCGTACGCAGAGTCAAACGACATAAACTCGGGTCGAGGTCGCCGGGATCCGACCAGACTCGGCTGAACAAGTTCCGAGGAGTCCGCCGGCGACCATGGGGCCGATGGGCCGCGGAGATCCGTGACCCGACCCGGAGAAAACGAGTCTGGCTCGGAACATTCGACACGGCAGAGGAAGCTGCCACTGTTTACGACAGAGCCGCAGTGTTGCTCAAAGGTCCTGACGCCGTCACCAACTTTCCTAACGCCGCTATGACGGAAGCCAAGGTCGTTGTTGGAGTCGGAGTTCTCCCCACTAGTGTCTCCGCCCCCAGATTCCAAAGAACTTTCAGTGCTATTCAGTCAATATTAAATACAAAATTAATTCTAATGATATTCATAGCTAAGCTAAATGAAAATTATAAATACTCACAGAAAAAAAAGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

196

Amino Acids

21.93

Weight (kDa)

10.37

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 561
AccII CGCG 1 cut(s) 272
AccIII TCCGGA 1 cut(s) 102
AciI CCGC 7 cut(s) 159, 244, 270, 272, 360, 408, 465
AclWI GGATC 4 cut(s) 113, 201, 214, 271
AcsI RAATTY 1 cut(s) 8
AcyI GRCGYC 3 cut(s) 120, 126, 384
AfaI GTAC 1 cut(s) 165
AhlI ACTAGT 1 cut(s) 455
AloI GAACNNNNNNTCC 2 cut(s) 429, 461
AluBI AGCT 5 cut(s) 40, 97, 338, 542, 547
AluI AGCT 5 cut(s) 40, 97, 338, 542, 547
Alw26I GTCTC 1 cut(s) 466
AlwI GGATC 4 cut(s) 113, 201, 214, 271
Ama87I CYCGRG 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 102
AoxI GGCC 2 cut(s) 259, 267
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 1 cut(s) 8
AseI ATTAAT 1 cut(s) 521
Asp700I GAANNNNTTC 1 cut(s) 230
AspS9I GGNCC 3 cut(s) 259, 267, 377
AsuC2I CCSGG 2 cut(s) 204, 292
AsuHPI GGTGA 2 cut(s) 37, 382
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 377
BamHI GGATCC 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 325
BccI CCATC 2 cut(s) 90, 258
BceAI ACGGC 2 cut(s) 342, 371
BclI TGATCA 1 cut(s) 33
BcnI CCSGG 2 cut(s) 204, 292
BcoDI GTCTC 1 cut(s) 466
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 1 cut(s) 456
BisI GCNGC 5 cut(s) 160, 270, 339, 360, 408
BlpI GCTNAGC 1 cut(s) 543
BlsI GCNGC 5 cut(s) 161, 271, 340, 361, 409
Bme1390I CCNGG 2 cut(s) 204, 292
Bme18I GGWCC 1 cut(s) 377
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 3 cut(s) 259, 267, 377
BmiI GGNNCC 2 cut(s) 208, 260
BmrFI CCNGG 2 cut(s) 204, 292
BpiI GAAGAC 1 cut(s) 159
BplI GAGNNNNNCTC 2 cut(s) 294, 326
BpmI CTGGAG 1 cut(s) 124
Bpu1102I GCTNAGC 1 cut(s) 543
BpuMI CCSGG 2 cut(s) 204, 292
BsaHI GRCGYC 3 cut(s) 120, 126, 384
BsaJI CCNNGG 4 cut(s) 235, 254, 270, 423
BsaWI WCCGGW 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
Bse118I RCCGGY 1 cut(s) 246
BseAI TCCGGA 1 cut(s) 102
BseDI CCNNGG 4 cut(s) 235, 254, 270, 423
BseRI GAGGAG 2 cut(s) 127, 252
BseXI GCAGC 1 cut(s) 325
Bsh1236I CGCG 1 cut(s) 272
BshFI GGCC 2 cut(s) 261, 269
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 4 cut(s) 103, 203, 247, 292
BsiWI CGTACG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 466
BsnI GGCC 2 cut(s) 261, 269
BsoBI CYCGRG 1 cut(s) 188
Bsp13I TCCGGA 1 cut(s) 102
Bsp143I GATC 4 cut(s) 33, 105, 206, 276
Bsp1720I GCTNAGC 1 cut(s) 543
Bsp19I CCATGG 1 cut(s) 254
BspACI CCGC 7 cut(s) 159, 244, 270, 272, 360, 408, 465
BspANI GGCC 2 cut(s) 261, 269
BspEI TCCGGA 1 cut(s) 102
BspFNI CGCG 1 cut(s) 272
BspLI GGNNCC 2 cut(s) 208, 260
BspPI GGATC 4 cut(s) 113, 201, 214, 271
BsrFI RCCGGY 1 cut(s) 246
BssAI RCCGGY 1 cut(s) 246
BssECI CCNNGG 4 cut(s) 235, 254, 270, 423
BssMI GATC 4 cut(s) 33, 105, 206, 276
BssNI GRCGYC 3 cut(s) 120, 126, 384
BssT1I CCWWGG 2 cut(s) 254, 423
Bst4CI ACNGT 1 cut(s) 346
BstACI GRCGYC 3 cut(s) 120, 126, 384
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 2 cut(s) 543, 585
BstDSI CCRYGG 2 cut(s) 254, 270
BstFNI CGCG 1 cut(s) 272
BstKTI GATC 4 cut(s) 36, 108, 209, 279
BstMAI GTCTC 1 cut(s) 466
BstMBI GATC 4 cut(s) 33, 105, 206, 276
BstMWI GCNNNNNNNGC 2 cut(s) 165, 335
BstSCI CCNGG 2 cut(s) 202, 290
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 2 cut(s) 206, 276
BstYI RGATCY 2 cut(s) 206, 276
BsuRI GGCC 2 cut(s) 261, 269
BtgI CCRYGG 2 cut(s) 254, 270
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 3 cut(s) 342, 369, 496
Cac8I GCNNGC 1 cut(s) 248
Cfr10I RCCGGY 1 cut(s) 246
Cfr13I GGNCC 3 cut(s) 259, 267, 377
Cfr42I CCGCGG 1 cut(s) 273
CseI GACGC 3 cut(s) 128, 134, 392
Csp6I GTAC 1 cut(s) 164
CviAII CATG 2 cut(s) 31, 255
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 2 cut(s) 543, 585
DpnI GATC 4 cut(s) 35, 107, 208, 278
DpnII GATC 4 cut(s) 33, 105, 206, 276
EciI GGCGGA 2 cut(s) 233, 454
Eco130I CCWWGG 2 cut(s) 254, 423
Eco47I GGWCC 1 cut(s) 377
Eco88I CYCGRG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 377
EcoT14I CCWWGG 2 cut(s) 254, 423
ErhI CCWWGG 2 cut(s) 254, 423
FaeI CATG 2 cut(s) 34, 258
FaiI YATR 7 cut(s) 32, 110, 183, 256, 413, 539, 561
FatI CATG 2 cut(s) 30, 254
FbaI TGATCA 1 cut(s) 33
Fnu4HI GCNGC 5 cut(s) 160, 270, 339, 360, 408
Fsp4HI GCNGC 5 cut(s) 160, 270, 339, 360, 408
FspBI CTAG 1 cut(s) 456
GluI GCNGC 5 cut(s) 160, 270, 339, 360, 408
GsuI CTGGAG 1 cut(s) 124
HaeIII GGCC 2 cut(s) 261, 269
HapII CCGG 4 cut(s) 103, 203, 247, 292
HgaI GACGC 3 cut(s) 128, 134, 392
Hin1I GRCGYC 3 cut(s) 120, 126, 384
Hin1II CATG 2 cut(s) 34, 258
HinfI GANTC 7 cut(s) 134, 171, 217, 240, 303, 438, 474
HpaII CCGG 4 cut(s) 103, 203, 247, 292
HphI GGTGA 2 cut(s) 37, 382
Hpy166II GTNNAC 2 cut(s) 73, 349
Hpy188I TCNGA 5 cut(s) 16, 211, 236, 314, 443
Hpy188III TCNNGA 2 cut(s) 103, 380
Hpy8I GTNNAC 2 cut(s) 73, 349
Hpy99I CGWCG 2 cut(s) 128, 149
HpyCH4III ACNGT 1 cut(s) 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 335
HpyF3I CTNAG 2 cut(s) 543, 585
Hsp92I GRCGYC 3 cut(s) 120, 126, 384
Hsp92II CATG 2 cut(s) 34, 258
Kpn2I TCCGGA 1 cut(s) 102
KroI GCCGGC 1 cut(s) 246
KroNI GCCGGC 1 cut(s) 248
Ksp22I TGATCA 1 cut(s) 33
KspI CCGCGG 1 cut(s) 273
Kzo9I GATC 4 cut(s) 33, 105, 206, 276
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 1 cut(s) 325
MaeI CTAG 1 cut(s) 456
MaeIII GTNAC 3 cut(s) 22, 281, 388
MalI GATC 4 cut(s) 35, 107, 208, 278
MboI GATC 4 cut(s) 33, 105, 206, 276
MboII GAAGA 2 cut(s) 161, 164
MflI RGATCY 2 cut(s) 206, 276
MluCI AATT 4 cut(s) 8, 518, 522, 556
MlyI GAGTC 6 cut(s) 128, 180, 211, 249, 312, 447
MmeI TCCRAC 3 cut(s) 234, 415, 421
MnlI CCTC 4 cut(s) 148, 189, 230, 325
MreI CGCCGGCG 1 cut(s) 246
MroI TCCGGA 1 cut(s) 102
MroNI GCCGGC 1 cut(s) 246
MroXI GAANNNNTTC 1 cut(s) 230
MseI TTAA 2 cut(s) 509, 521
MspA1I CMGCKG 2 cut(s) 159, 272
MspI CCGG 4 cut(s) 103, 203, 247, 292
MspR9I CCNGG 2 cut(s) 204, 292
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 2 cut(s) 165, 335
NaeI GCCGGC 1 cut(s) 248
NciI CCSGG 2 cut(s) 204, 292
NcoI CCATGG 1 cut(s) 254
NdeII GATC 4 cut(s) 33, 105, 206, 276
NgoMIV GCCGGC 1 cut(s) 246
NlaIII CATG 2 cut(s) 34, 258
NlaIV GGNNCC 2 cut(s) 208, 260
NmeAIII GCCGAG 1 cut(s) 199
NmuCI GTSAC 2 cut(s) 281, 388
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PdiI GCCGGC 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 474
Pfl23II CGTACG 1 cut(s) 163
PflFI GACNNNGTC 1 cut(s) 386
PkrI GCNGC 5 cut(s) 161, 271, 340, 361, 409
PleI GAGTC 6 cut(s) 128, 179, 211, 248, 311, 446
PpsI GAGTC 6 cut(s) 128, 179, 211, 248, 311, 446
PpuMI RGGWCCY 1 cut(s) 377
PshBI ATTAAT 1 cut(s) 521
PsiI TTATAA 1 cut(s) 561
Psp5II RGGWCCY 1 cut(s) 377
PspLI CGTACG 1 cut(s) 163
PspN4I GGNNCC 2 cut(s) 208, 260
PspPI GGNCC 3 cut(s) 259, 267, 377
PspPPI RGGWCCY 1 cut(s) 377
PsuI RGATCY 2 cut(s) 206, 276
PsyI GACNNNGTC 1 cut(s) 386
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SacII CCGCGG 1 cut(s) 273
SaqAI TTAA 2 cut(s) 509, 521
SatI GCNGC 5 cut(s) 160, 270, 339, 360, 408
Sau3AI GATC 4 cut(s) 33, 105, 206, 276
Sau96I GGNCC 3 cut(s) 259, 267, 377
SchI GAGTC 6 cut(s) 128, 180, 211, 249, 312, 447
ScrFI CCNGG 2 cut(s) 204, 292
SetI ASST 8 cut(s) 42, 99, 200, 340, 379, 429, 544, 549
Sfr303I CCGCGG 1 cut(s) 273
SgrAI CRCCGGYG 1 cut(s) 246
SgrBI CCGCGG 1 cut(s) 273
SinI GGWCC 1 cut(s) 377
SpeI ACTAGT 1 cut(s) 455
Sse9I AATT 4 cut(s) 8, 518, 522, 556
SsiI CCGC 7 cut(s) 159, 244, 270, 272, 360, 408, 465
SspI AATATT 1 cut(s) 507
SspMI CTAG 1 cut(s) 456
StyD4I CCNGG 2 cut(s) 202, 290
StyI CCWWGG 2 cut(s) 254, 423
TaaI ACNGT 1 cut(s) 346
TaqI TCGA 2 cut(s) 194, 321
TasI AATT 4 cut(s) 8, 518, 522, 556
TauI GCSGC 4 cut(s) 162, 272, 362, 410
TfiI GAWTC 1 cut(s) 474
Tru1I TTAA 2 cut(s) 509, 521
Tru9I TTAA 2 cut(s) 509, 521
TscAI CASTG 3 cut(s) 349, 369, 496
TseFI GTSAC 2 cut(s) 281, 388
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 2 cut(s) 281, 388
TspDTI ATGAA 2 cut(s) 526, 567
TspGWI ACGGA 2 cut(s) 269, 431
TspRI CASTG 3 cut(s) 349, 369, 496
Tth111I GACNNNGTC 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 377
VspI ATTAAT 1 cut(s) 521
XapI RAATTY 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.