FvH4_3g40810

Pathogenesis-related genes transcriptional activator PTI6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009231
Physical Location & Seq
Reverse (-)
34356930 .. 34357727
798 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40810.t1

Sequence Viewer

Length: 798 bp
ATGGCGAAATTCTCAGAGCATGTTATCTCAGTGAGCAAGTTCATTCAAGAAAACACCCATCTTGAAAAGACCCGACTGTTACAGAAGCGGGTTCGGATCATCCTCACAGACCCGGACGCCACGGACTCCGACAGCGACGACGATGAGAGGTCGAGCTCCGCCGTGCGGAGAGTGAAACGACATGTAAAGGAGATCAGCTTCGAGCCGGCTTCCTCCTCTTTTAAGCTGCCGAAGAGAGAAATACCCGAGACCCGACCCGATCCGAAGTCACCGGATTCGGATCCGGCCCGGAAGAAGCATTTCCGGGGTGTACGGCAGAGGCCATGGGGTCGCTGGGCCGCGGAGATCCGTGACCCGGTTCAACGGAAGCGGCTCTGGCTCGGGACTTTCAACACCGCCGAGGAAGCTGCCATTATATACGACAGAGCCGCCGTGAAGCTCAGAGGTCCTGACGCCGTCACCAACTTTCCTAACTCCGTTACAACGGAGGTGGAGACCGTTGTTGCTGAGGAGGTCCCCACCGCGCATGAAGAGGAAGGAAGCTTCGGCTCGACCGCCACGTGTGACTCGCTTTCCAATGAAGAACCGGCGTTATCTCCCACTTCAGTACTCCGTTACGACGACCCCGCCCCCTTTGGCGGGTTCCGTTACTGCGGTGACGTCCACGACTTCGGGTTTGAATACGACGTGCCGTCGCTGAACCTGCCGGACATAATGGTCCCGGCGAACAACAACTTCAATCACGACGAGTTCGGCGAGTTTGACGTCAACGACTTCCTAGTCGACGTCATCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

266

Amino Acids

29.91

Weight (kDa)

5.06

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 100 - 149 5.3e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 716, 779
AatII GACGTC 3 cut(s) 663, 768, 789
Acc36I ACCTGC 1 cut(s) 711
AccI GTMKAC 1 cut(s) 783
AccII CGCG 2 cut(s) 341, 524
AclWI GGATC 5 cut(s) 104, 254, 275, 288, 340
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 588
AcvI CACGTG 1 cut(s) 561
AcyI GRCGYC 5 cut(s) 117, 453, 660, 765, 786
AfaI GTAC 2 cut(s) 312, 609
AfiI CCNNNNNNNGG 4 cut(s) 165, 355, 638, 639
AflIII ACRYGT 2 cut(s) 181, 560
AgsI TTSAA 6 cut(s) 47, 65, 362, 391, 680, 739
AhdI GACNNNNNGTC 1 cut(s) 691
AjiI CACGTC 1 cut(s) 688
AluBI AGCT 6 cut(s) 156, 198, 226, 407, 439, 543
AluI AGCT 6 cut(s) 156, 198, 226, 407, 439, 543
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 2 cut(s) 242, 488
AlwI GGATC 5 cut(s) 104, 254, 275, 288, 340
Ama87I CYCGRG 2 cut(s) 245, 380
AoxI GGCC 3 cut(s) 285, 320, 336
ApeKI GCWGC 2 cut(s) 226, 407
ApoI RAATTY 1 cut(s) 8
ArsI GACNNNNNNTTYG 2 cut(s) 659, 691
Asp700I GAANNNNTTC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 526
AspS9I GGNCC 5 cut(s) 286, 336, 446, 514, 718
AsuC2I CCSGG 5 cut(s) 113, 289, 305, 356, 722
AsuHPI GGTGA 3 cut(s) 261, 451, 668
AvaI CYCGRG 2 cut(s) 245, 380
AvaII GGWCC 3 cut(s) 446, 514, 718
BamHI GGATCC 1 cut(s) 280
BanII GRGCYC 1 cut(s) 158
BbrPI CACGTG 1 cut(s) 561
Bbv12I GWGCWC 1 cut(s) 158
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 213, 394
BccI CCATC 1 cut(s) 66
BceAI ACGGC 5 cut(s) 146, 329, 416, 440, 676
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BcnI CCSGG 5 cut(s) 113, 289, 305, 356, 722
BcoDI GTCTC 2 cut(s) 242, 488
BfaI CTAG 1 cut(s) 779
BfuAI ACCTGC 1 cut(s) 711
BisI GCNGC 5 cut(s) 227, 339, 371, 408, 429
BlsI GCNGC 5 cut(s) 228, 340, 372, 409, 430
BmcAI AGTACT 1 cut(s) 609
Bme1390I CCNGG 5 cut(s) 113, 289, 305, 356, 722
Bme18I GGWCC 3 cut(s) 446, 514, 718
BmeRI GACNNNNNGTC 1 cut(s) 691
BmeT110I CYCGRG 2 cut(s) 245, 380
BmgBI CACGTC 1 cut(s) 688
BmgT120I GGNCC 5 cut(s) 286, 336, 446, 514, 718
BmiI GGNNCC 4 cut(s) 282, 516, 644, 720
BmrFI CCNGG 5 cut(s) 113, 289, 305, 356, 722
Bpu10I CCTNAGC 1 cut(s) 507
BpuMI CCSGG 5 cut(s) 113, 289, 305, 356, 722
BsaAI YACGTR 1 cut(s) 561
BsaBI GATNNNNATC 1 cut(s) 279
BsaHI GRCGYC 5 cut(s) 117, 453, 660, 765, 786
BsaI GGTCTC 2 cut(s) 242, 488
BsaJI CCNNGG 5 cut(s) 120, 304, 323, 339, 399
BsaWI WCCGGW 1 cut(s) 271
BsaXI ACNNNNNCTCC 1 cut(s) 776
Bsc4I CCNNNNNNNGG 4 cut(s) 165, 355, 638, 639
Bse118I RCCGGY 2 cut(s) 205, 586
Bse8I GATNNNNATC 1 cut(s) 279
BseDI CCNNGG 5 cut(s) 120, 304, 323, 339, 399
BseGI GGATG 1 cut(s) 99
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 4 cut(s) 165, 355, 638, 639
BseMII CTCAG 4 cut(s) 27, 42, 454, 498
BseRI GAGGAG 2 cut(s) 205, 524
BseXI GCAGC 2 cut(s) 213, 394
BseYI CCCAGC 1 cut(s) 333
Bsh1236I CGCG 2 cut(s) 341, 524
Bsh1285I CGRYCG 1 cut(s) 555
BshFI GGCC 3 cut(s) 287, 322, 338
BsiEI CGRYCG 1 cut(s) 555
BsiHKAI GWGCWC 1 cut(s) 158
BsiHKCI CYCGRG 2 cut(s) 245, 380
BslFI GGGAC 3 cut(s) 397, 500, 704
BslI CCNNNNNNNGG 4 cut(s) 165, 355, 638, 639
BsmAI GTCTC 2 cut(s) 242, 488
BsmFI GGGAC 3 cut(s) 397, 500, 704
BsnI GGCC 3 cut(s) 287, 322, 338
Bso31I GGTCTC 2 cut(s) 242, 488
BsoBI CYCGRG 2 cut(s) 245, 380
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 5 cut(s) 96, 192, 259, 280, 345
Bsp19I CCATGG 1 cut(s) 323
BspANI GGCC 3 cut(s) 287, 322, 338
BspCNI CTCAG 4 cut(s) 26, 41, 453, 499
BspFNI CGCG 2 cut(s) 341, 524
BspLI GGNNCC 4 cut(s) 282, 516, 644, 720
BspMI ACCTGC 1 cut(s) 711
BspPI GGATC 5 cut(s) 104, 254, 275, 288, 340
BspTNI GGTCTC 2 cut(s) 242, 488
BsrFI RCCGGY 2 cut(s) 205, 586
BssAI RCCGGY 2 cut(s) 205, 586
BssECI CCNNGG 5 cut(s) 120, 304, 323, 339, 399
BssMI GATC 5 cut(s) 96, 192, 259, 280, 345
BssNI GRCGYC 5 cut(s) 117, 453, 660, 765, 786
BssT1I CCWWGG 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 78, 499
Bst6I CTCTTC 2 cut(s) 227, 525
BstACI GRCGYC 5 cut(s) 117, 453, 660, 765, 786
BstBAI YACGTR 1 cut(s) 561
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 4 cut(s) 13, 28, 440, 507
BstDSI CCRYGG 3 cut(s) 120, 323, 339
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 2 cut(s) 341, 524
BstHHI GCGC 1 cut(s) 526
BstKTI GATC 5 cut(s) 99, 195, 262, 283, 348
BstMAI GTCTC 2 cut(s) 242, 488
BstMBI GATC 5 cut(s) 96, 192, 259, 280, 345
BstMCI CGRYCG 1 cut(s) 555
BstMWI GCNNNNNNNGC 3 cut(s) 376, 404, 703
BstNSI RCATGY 2 cut(s) 23, 185
BstSCI CCNGG 5 cut(s) 111, 287, 303, 354, 720
BstUI CGCG 2 cut(s) 341, 524
BstV1I GCAGC 2 cut(s) 213, 394
BstX2I RGATCY 2 cut(s) 280, 345
BstYI RGATCY 2 cut(s) 280, 345
BsuRI GGCC 3 cut(s) 287, 322, 338
BtgI CCRYGG 3 cut(s) 120, 323, 339
BtrI CACGTC 1 cut(s) 688
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 711
Cac8I GCNNGC 1 cut(s) 207
CfoI GCGC 1 cut(s) 526
Cfr10I RCCGGY 2 cut(s) 205, 586
Cfr13I GGNCC 5 cut(s) 286, 336, 446, 514, 718
Cfr42I CCGCGG 1 cut(s) 342
CseI GACGC 2 cut(s) 125, 461
Csp6I GTAC 2 cut(s) 311, 608
CspCI CAANNNNNGTGG 2 cut(s) 471, 506
CviAII CATG 4 cut(s) 20, 182, 324, 527
CviQI GTAC 2 cut(s) 311, 608
DdeI CTNAG 4 cut(s) 13, 28, 440, 507
DpnI GATC 5 cut(s) 98, 194, 261, 282, 347
DpnII GATC 5 cut(s) 96, 192, 259, 280, 345
DrdI GACNNNNNNGTC 2 cut(s) 716, 779
DriI GACNNNNNGTC 1 cut(s) 691
DseDI GACNNNNNNGTC 2 cut(s) 716, 779
Eam1104I CTCTTC 2 cut(s) 227, 525
Eam1105I GACNNNNNGTC 1 cut(s) 691
EarI CTCTTC 2 cut(s) 227, 525
EciI GGCGGA 1 cut(s) 148
Ecl136II GAGCTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 158
Eco31I GGTCTC 2 cut(s) 242, 488
Eco47I GGWCC 3 cut(s) 446, 514, 718
Eco53kI GAGCTC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 588
Eco72I CACGTG 1 cut(s) 561
Eco88I CYCGRG 2 cut(s) 245, 380
EcoICRI GAGCTC 1 cut(s) 156
EcoO109I RGGNCCY 2 cut(s) 446, 514
EcoT14I CCWWGG 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 4 cut(s) 23, 185, 327, 530
FaiI YATR 7 cut(s) 21, 183, 325, 416, 418, 528, 713
FaqI GGGAC 3 cut(s) 397, 500, 704
FatI CATG 4 cut(s) 19, 181, 323, 526
FauI CCCGC 3 cut(s) 81, 632, 634
FblI GTMKAC 1 cut(s) 783
Fnu4HI GCNGC 5 cut(s) 227, 339, 371, 408, 429
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 5 cut(s) 227, 339, 371, 408, 429
FspBI CTAG 1 cut(s) 779
GlaI GCGC 1 cut(s) 525
GluI GCNGC 5 cut(s) 227, 339, 371, 408, 429
GsaI CCCAGC 1 cut(s) 337
HaeIII GGCC 3 cut(s) 287, 322, 338
HgaI GACGC 2 cut(s) 125, 461
HhaI GCGC 1 cut(s) 526
Hin1I GRCGYC 5 cut(s) 117, 453, 660, 765, 786
Hin1II CATG 4 cut(s) 23, 185, 327, 530
Hin6I GCGC 1 cut(s) 524
HinP1I GCGC 1 cut(s) 524
HincII GTYRAC 2 cut(s) 769, 784
HindII GTYRAC 2 cut(s) 769, 784
HindIII AAGCTT 1 cut(s) 541
HinfI GANTC 3 cut(s) 125, 275, 566
HphI GGTGA 3 cut(s) 261, 451, 668
Hpy166II GTNNAC 4 cut(s) 311, 664, 769, 784
Hpy188I TCNGA 6 cut(s) 16, 96, 130, 264, 280, 443
Hpy188III TCNNGA 5 cut(s) 47, 62, 382, 449, 743
Hpy8I GTNNAC 4 cut(s) 311, 664, 769, 784
Hpy99I CGWCG 7 cut(s) 140, 143, 623, 689, 697, 749, 788
HpyAV CCTTC 1 cut(s) 530
HpyCH4III ACNGT 2 cut(s) 78, 499
HpyCH4IV ACGT 5 cut(s) 560, 660, 687, 765, 786
HpyF10VI GCNNNNNNNGC 3 cut(s) 376, 404, 703
HpyF3I CTNAG 4 cut(s) 13, 28, 440, 507
HpySE526I ACGT 5 cut(s) 560, 660, 687, 765, 786
Hsp92I GRCGYC 5 cut(s) 117, 453, 660, 765, 786
Hsp92II CATG 4 cut(s) 23, 185, 327, 530
HspAI GCGC 1 cut(s) 524
KroI GCCGGC 1 cut(s) 205
KroNI GCCGGC 1 cut(s) 207
KspI CCGCGG 1 cut(s) 342
Kzo9I GATC 5 cut(s) 96, 192, 259, 280, 345
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 2 cut(s) 213, 394
MaeI CTAG 1 cut(s) 779
MaeII ACGT 5 cut(s) 560, 660, 687, 765, 786
MaeIII GTNAC 9 cut(s) 78, 267, 350, 457, 478, 563, 614, 647, 656
MalI GATC 5 cut(s) 98, 194, 261, 282, 347
MboI GATC 5 cut(s) 96, 192, 259, 280, 345
MboII GAAGA 4 cut(s) 244, 304, 542, 593
MflI RGATCY 2 cut(s) 280, 345
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 1 cut(s) 8
MlyI GAGTC 2 cut(s) 119, 560
MmeI TCCRAC 1 cut(s) 153
MroNI GCCGGC 1 cut(s) 205
MroXI GAANNNNTTC 1 cut(s) 299
MseI TTAA 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 341
MspR9I CCNGG 5 cut(s) 113, 289, 305, 356, 722
MvnI CGCG 2 cut(s) 341, 524
MwoI GCNNNNNNNGC 3 cut(s) 376, 404, 703
NaeI GCCGGC 1 cut(s) 207
NciI CCSGG 5 cut(s) 113, 289, 305, 356, 722
NcoI CCATGG 1 cut(s) 323
NdeII GATC 5 cut(s) 96, 192, 259, 280, 345
NgoMIV GCCGGC 1 cut(s) 205
NlaIII CATG 4 cut(s) 23, 185, 327, 530
NlaIV GGNNCC 4 cut(s) 282, 516, 644, 720
NmeAIII GCCGAG 1 cut(s) 424
NmuCI GTSAC 5 cut(s) 267, 350, 457, 563, 656
NspI RCATGY 2 cut(s) 23, 185
PciI ACATGT 1 cut(s) 181
PcsI WCGNNNNNNNCGW 2 cut(s) 557, 753
PdiI GCCGGC 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 275
PflFI GACNNNGTC 1 cut(s) 455
PkrI GCNGC 5 cut(s) 228, 340, 372, 409, 430
PleI GAGTC 2 cut(s) 119, 560
PmaCI CACGTG 1 cut(s) 561
PmlI CACGTG 1 cut(s) 561
PpsI GAGTC 2 cut(s) 119, 560
Ppu21I YACGTR 1 cut(s) 561
PpuMI RGGWCCY 2 cut(s) 446, 514
PscI ACATGT 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 158
Psp5II RGGWCCY 2 cut(s) 446, 514
PspCI CACGTG 1 cut(s) 561
PspFI CCCAGC 1 cut(s) 333
PspN4I GGNNCC 4 cut(s) 282, 516, 644, 720
PspPI GGNCC 5 cut(s) 286, 336, 446, 514, 718
PspPPI RGGWCCY 2 cut(s) 446, 514
PsuI RGATCY 2 cut(s) 280, 345
PsyI GACNNNGTC 1 cut(s) 455
RsaI GTAC 2 cut(s) 312, 609
RsaNI GTAC 2 cut(s) 311, 608
SacI GAGCTC 1 cut(s) 158
SacII CCGCGG 1 cut(s) 342
SalI GTCGAC 1 cut(s) 782
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 5 cut(s) 227, 339, 371, 408, 429
Sau3AI GATC 5 cut(s) 96, 192, 259, 280, 345
Sau96I GGNCC 5 cut(s) 286, 336, 446, 514, 718
ScaI AGTACT 1 cut(s) 609
SchI GAGTC 2 cut(s) 119, 560
ScrFI CCNGG 5 cut(s) 113, 289, 305, 356, 722
SduI GDGCHC 1 cut(s) 158
Sfr303I CCGCGG 1 cut(s) 342
SgrBI CCGCGG 1 cut(s) 342
SinI GGWCC 3 cut(s) 446, 514, 718
Sse9I AATT 1 cut(s) 8
SspMI CTAG 1 cut(s) 779
SstI GAGCTC 1 cut(s) 158
StyD4I CCNGG 5 cut(s) 111, 287, 303, 354, 720
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 2 cut(s) 78, 499
TaiI ACGT 5 cut(s) 563, 663, 690, 768, 789
TaqI TCGA 4 cut(s) 152, 201, 551, 783
TasI AATT 1 cut(s) 8
TatI WGTACW 1 cut(s) 607
TauI GCSGC 3 cut(s) 341, 373, 431
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 5 cut(s) 267, 350, 457, 563, 656
TseI GCWGC 2 cut(s) 226, 407
Tsp45I GTSAC 5 cut(s) 267, 350, 457, 563, 656
TspDTI ATGAA 3 cut(s) 31, 543, 594
TspGWI ACGGA 7 cut(s) 137, 338, 379, 466, 500, 602, 635
TspRI CASTG 1 cut(s) 36
Tth111I GACNNNGTC 1 cut(s) 455
VpaK11BI GGWCC 3 cut(s) 446, 514, 718
XapI RAATTY 1 cut(s) 8
XceI RCATGY 2 cut(s) 23, 185
XcmI CCANNNNNNNNNTGG 1 cut(s) 330
XmiI GTMKAC 1 cut(s) 783
XmnI GAANNNNTTC 1 cut(s) 299
XspI CTAG 1 cut(s) 779
ZraI GACGTC 3 cut(s) 661, 766, 787
ZrmI AGTACT 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.