MD17G1146800.v1.1

Pathogenesis-related genes transcriptional activator PTI6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0009231
Physical Location & Seq
Forward (+)
13295495 .. 13296193
699 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1146800.v1.1.491

Sequence Viewer

Length: 699 bp
ATGAGCTTTTTCCCCCTTCGATTTTTCATTTCGCTCCACCACCAAATCCCTAATTCAATTCCGCCGCCATCAAATTCCATGTCCACCGTCCAAATCAACCGCTCCGTCGCCAATTCCAATGTCCAATTCTCGGAGCAAACAACCGCCCTTGCCAAACCCGTGATCCACGAAACCCCATACCCGACCCGAATCCAACCAAAGCTTGTGCGGATCATACACGCCGACGCCACTGACTCCTCCAGCGACGACAATGAGGACAGCGTCGTGCCGGCGGTGAAGCGGCGCGTCAGAGAGATCAACCTTGAGGTCCCTTCGCCTTCCTCCGCTTCGTCTTCTCCGCCTTGCTCCGGTTGTCCTAAGCTGTCCAAGCGAGCCAAGCTGCCTCCGAAATCGGGCCCGGGCCGCCGGGAAAGGTTCGTAGGCGTCCGCCAGCGACCGTGGGGCAGGTGGGCTGCGGAAATTCGAGACCCGAATCAGAGAAAACGGCTTTGGCTCGGAACCTTCGACACGGAGGAGGATGCTGCGGCGGCGTATGACAGAACTTCACTGATGCTCAGGGGTCCTCGTGCTGTCACTAACCTTCCTGGAGCTGGGGAGACGGTGGTTGCTGATGAGGTGGTGGCTGCTGCGACTGTGGGACCATGGGGAAGGAGGAGGAGCATTTGCCGCCGTGGGGAGGGGGCTGCTTATTGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

233

Amino Acids

25.57

Weight (kDa)

10.08

Isoelectric Point (pI)

64.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 138 - 187 3.6e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 435
Acc36I ACCTGC 1 cut(s) 435
AccBSI CCGCTC 1 cut(s) 102
AccII CGCG 1 cut(s) 285
AclWI GGATC 2 cut(s) 157, 218
AcsI RAATTY 2 cut(s) 73, 459
AcyI GRCGYC 2 cut(s) 225, 423
AfiI CCNNNNNNNGG 6 cut(s) 130, 347, 392, 590, 673, 676
AgsI TTSAA 1 cut(s) 57
AjnI CCWGG 1 cut(s) 583
AjuI GAANNNNNNNTTGG 4 cut(s) 110, 142, 472, 504
AluBI AGCT 5 cut(s) 6, 202, 361, 379, 590
AluI AGCT 5 cut(s) 6, 202, 361, 379, 590
Alw26I GTCTC 2 cut(s) 459, 590
AlwI GGATC 2 cut(s) 157, 218
Ama87I CYCGRG 1 cut(s) 397
AoxI GGCC 2 cut(s) 394, 400
ApaI GGGCCC 1 cut(s) 398
ApeKI GCWGC 6 cut(s) 379, 452, 521, 623, 626, 683
ApoI RAATTY 2 cut(s) 73, 459
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 6 cut(s) 307, 394, 395, 400, 560, 638
AsuC2I CCSGG 3 cut(s) 398, 399, 407
AsuHPI GGTGA 1 cut(s) 286
AvaI CYCGRG 1 cut(s) 397
AvaII GGWCC 3 cut(s) 307, 560, 638
BaeGI GKGCMC 1 cut(s) 398
BanII GRGCYC 1 cut(s) 398
BauI CACGAG 1 cut(s) 564
BbsI GAAGAC 1 cut(s) 324
BbvI GCAGC 6 cut(s) 366, 439, 508, 610, 613, 670
BccI CCATC 1 cut(s) 76
BceAI ACGGC 2 cut(s) 500, 654
BciT130I CCWGG 1 cut(s) 585
BcnI CCSGG 3 cut(s) 398, 399, 407
BcoDI GTCTC 2 cut(s) 459, 590
BfuAI ACCTGC 1 cut(s) 435
Bme1390I CCNGG 4 cut(s) 398, 399, 407, 585
Bme18I GGWCC 3 cut(s) 307, 560, 638
BmeT110I CYCGRG 1 cut(s) 397
BmgT120I GGNCC 6 cut(s) 307, 394, 395, 400, 560, 638
BmiI GGNNCC 5 cut(s) 309, 396, 499, 561, 639
BmrFI CCNGG 4 cut(s) 398, 399, 407, 585
BmsI GCATC 2 cut(s) 508, 540
BpiI GAAGAC 1 cut(s) 324
BpmI CTGGAG 2 cut(s) 223, 606
Bpu10I CCTNAGC 2 cut(s) 357, 554
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 3 cut(s) 398, 399, 407
BsaHI GRCGYC 2 cut(s) 225, 423
BsaI GGTCTC 1 cut(s) 459
BsaJI CCNNGG 4 cut(s) 397, 437, 641, 670
BsaWI WCCGGW 1 cut(s) 347
Bsc4I CCNNNNNNNGG 6 cut(s) 130, 347, 392, 590, 673, 676
Bse118I RCCGGY 1 cut(s) 268
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 4 cut(s) 397, 437, 641, 670
BseGI GGATG 1 cut(s) 523
BseLI CCNNNNNNNGG 6 cut(s) 130, 347, 392, 590, 673, 676
BseMII CTCAG 1 cut(s) 568
BseRI GAGGAG 4 cut(s) 226, 527, 667, 670
BseSI GKGCMC 1 cut(s) 398
BseXI GCAGC 6 cut(s) 366, 439, 508, 610, 613, 670
BseYI CCCAGC 1 cut(s) 590
Bsh1236I CGCG 1 cut(s) 285
Bsh1285I CGRYCG 1 cut(s) 437
BshFI GGCC 2 cut(s) 396, 402
BsiEI CGRYCG 1 cut(s) 437
BsiHKCI CYCGRG 1 cut(s) 397
BsiSI CCGG 4 cut(s) 269, 348, 398, 406
BslFI GGGAC 2 cut(s) 293, 651
BslI CCNNNNNNNGG 6 cut(s) 130, 347, 392, 590, 673, 676
BsmAI GTCTC 2 cut(s) 459, 590
BsmBI CGTCTC 1 cut(s) 590
BsmFI GGGAC 2 cut(s) 293, 651
BsnI GGCC 2 cut(s) 396, 402
Bso31I GGTCTC 1 cut(s) 459
BsoBI CYCGRG 1 cut(s) 397
Bsp120I GGGCCC 1 cut(s) 394
Bsp1286I GDGCHC 1 cut(s) 398
Bsp143I GATC 3 cut(s) 162, 210, 294
Bsp19I CCATGG 1 cut(s) 641
BspANI GGCC 2 cut(s) 396, 402
BspCNI CTCAG 1 cut(s) 567
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 5 cut(s) 309, 396, 499, 561, 639
BspMI ACCTGC 1 cut(s) 435
BspPI GGATC 2 cut(s) 157, 218
BspTNI GGTCTC 1 cut(s) 459
BsrBI CCGCTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 268
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 4 cut(s) 397, 437, 641, 670
BssMI GATC 3 cut(s) 162, 210, 294
BssNI GRCGYC 2 cut(s) 225, 423
BssSI CACGAG 1 cut(s) 564
BssT1I CCWWGG 1 cut(s) 641
Bst2BI CACGAG 1 cut(s) 564
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 4 cut(s) 88, 438, 601, 634
BstACI GRCGYC 2 cut(s) 225, 423
BstC8I GCNNGC 3 cut(s) 270, 372, 431
BstDEI CTNAG 2 cut(s) 357, 554
BstDSI CCRYGG 3 cut(s) 437, 641, 670
BstF5I GGATG 1 cut(s) 523
BstFNI CGCG 1 cut(s) 285
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 3 cut(s) 165, 213, 297
BstMAI GTCTC 2 cut(s) 459, 590
BstMBI GATC 3 cut(s) 162, 210, 294
BstMCI CGRYCG 1 cut(s) 437
BstMWI GCNNNNNNNGC 5 cut(s) 367, 376, 402, 527, 666
BstNI CCWGG 1 cut(s) 585
BstSCI CCNGG 4 cut(s) 396, 397, 405, 583
BstSLI GKGCMC 1 cut(s) 398
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 6 cut(s) 366, 439, 508, 610, 613, 670
BstV2I GAAGAC 1 cut(s) 324
BsuRI GGCC 2 cut(s) 396, 402
BtgI CCRYGG 3 cut(s) 437, 641, 670
BtsCI GGATG 1 cut(s) 523
BtsIMutI CAGTG 2 cut(s) 228, 545
BveI ACCTGC 1 cut(s) 435
Cac8I GCNNGC 3 cut(s) 270, 372, 431
CfoI GCGC 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 268
Cfr13I GGNCC 6 cut(s) 307, 394, 395, 400, 560, 638
Cfr9I CCCGGG 1 cut(s) 397
CseI GACGC 4 cut(s) 233, 250, 274, 412
CviAII CATG 2 cut(s) 79, 642
DdeI CTNAG 2 cut(s) 357, 554
DpnI GATC 3 cut(s) 164, 212, 296
DpnII GATC 3 cut(s) 162, 210, 294
EciI GGCGGA 3 cut(s) 51, 327, 416
Eco130I CCWWGG 1 cut(s) 641
Eco24I GRGCYC 1 cut(s) 398
Eco31I GGTCTC 1 cut(s) 459
Eco47I GGWCC 3 cut(s) 307, 560, 638
Eco88I CYCGRG 1 cut(s) 397
EcoO109I RGGNCCY 2 cut(s) 307, 560
EcoRII CCWGG 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 641
EcoT38I GRGCYC 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 641
Esp3I CGTCTC 1 cut(s) 590
FaeI CATG 2 cut(s) 82, 645
FaiI YATR 5 cut(s) 80, 178, 215, 534, 643
FaqI GGGAC 2 cut(s) 293, 651
FatI CATG 2 cut(s) 78, 641
FokI GGATG 1 cut(s) 530
FriOI GRGCYC 1 cut(s) 398
GlaI GCGC 1 cut(s) 284
GsaI CCCAGC 1 cut(s) 594
GsuI CTGGAG 2 cut(s) 223, 606
HaeIII GGCC 2 cut(s) 396, 402
HapII CCGG 4 cut(s) 269, 348, 398, 406
HgaI GACGC 4 cut(s) 233, 250, 274, 412
HhaI GCGC 1 cut(s) 285
Hin1I GRCGYC 2 cut(s) 225, 423
Hin1II CATG 2 cut(s) 82, 645
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 3 cut(s) 189, 233, 472
HpaII CCGG 4 cut(s) 269, 348, 398, 406
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 5 cut(s) 133, 290, 387, 477, 497
Hpy188III TCNNGA 1 cut(s) 464
Hpy8I GTNNAC 1 cut(s) 84
Hpy99I CGWCG 4 cut(s) 110, 227, 248, 266
HpyAV CCTTC 6 cut(s) 26, 321, 327, 511, 590, 642
HpyCH4III ACNGT 4 cut(s) 88, 438, 601, 634
HpyF10VI GCNNNNNNNGC 5 cut(s) 367, 376, 402, 527, 666
HpyF3I CTNAG 2 cut(s) 357, 554
Hsp92I GRCGYC 2 cut(s) 225, 423
Hsp92II CATG 2 cut(s) 82, 645
HspAI GCGC 1 cut(s) 283
KroI GCCGGC 1 cut(s) 268
KroNI GCCGGC 1 cut(s) 270
Kzo9I GATC 3 cut(s) 162, 210, 294
LmnI GCTCC 6 cut(s) 39, 107, 133, 350, 587, 657
Lsp1109I GCAGC 6 cut(s) 366, 439, 508, 610, 613, 670
LweI GCATC 2 cut(s) 508, 540
MaeIII GTNAC 1 cut(s) 571
MalI GATC 3 cut(s) 164, 212, 296
MbiI CCGCTC 1 cut(s) 102
MboI GATC 3 cut(s) 162, 210, 294
MboII GAAGA 1 cut(s) 324
MhlI GDGCHC 1 cut(s) 398
MluCI AATT 6 cut(s) 52, 57, 73, 112, 125, 459
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 217
MroNI GCCGGC 1 cut(s) 268
MseI TTAA 1 cut(s) 697
MspI CCGG 4 cut(s) 269, 348, 398, 406
MspR9I CCNGG 4 cut(s) 398, 399, 407, 585
MvaI CCWGG 1 cut(s) 585
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 5 cut(s) 367, 376, 402, 527, 666
NaeI GCCGGC 1 cut(s) 270
NciI CCSGG 3 cut(s) 398, 399, 407
NcoI CCATGG 1 cut(s) 641
NdeII GATC 3 cut(s) 162, 210, 294
NgoMIV GCCGGC 1 cut(s) 268
NlaIII CATG 2 cut(s) 82, 645
NlaIV GGNNCC 5 cut(s) 309, 396, 499, 561, 639
NmuCI GTSAC 1 cut(s) 571
PaqCI CACCTGC 1 cut(s) 435
PcsI WCGNNNNNNNCGW 1 cut(s) 501
PdiI GCCGGC 1 cut(s) 270
PfeI GAWTC 2 cut(s) 189, 472
PflFI GACNNNGTC 1 cut(s) 260
PfoI TCCNGGA 1 cut(s) 583
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PpuMI RGGWCCY 2 cut(s) 307, 560
Psp5II RGGWCCY 2 cut(s) 307, 560
Psp6I CCWGG 1 cut(s) 583
PspFI CCCAGC 1 cut(s) 590
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 5 cut(s) 309, 396, 499, 561, 639
PspOMI GGGCCC 1 cut(s) 394
PspPI GGNCC 6 cut(s) 307, 394, 395, 400, 560, 638
PspPPI RGGWCCY 2 cut(s) 307, 560
PsyI GACNNNGTC 1 cut(s) 260
SaqAI TTAA 1 cut(s) 697
Sau3AI GATC 3 cut(s) 162, 210, 294
Sau96I GGNCC 6 cut(s) 307, 394, 395, 400, 560, 638
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 4 cut(s) 398, 399, 407, 585
SduI GDGCHC 1 cut(s) 398
SfaNI GCATC 2 cut(s) 508, 540
SinI GGWCC 3 cut(s) 307, 560, 638
SmaI CCCGGG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
SrfI GCCCGGGC 1 cut(s) 399
Sse9I AATT 6 cut(s) 52, 57, 73, 112, 125, 459
StyD4I CCNGG 4 cut(s) 396, 397, 405, 583
StyI CCWWGG 1 cut(s) 641
TaaI ACNGT 4 cut(s) 88, 438, 601, 634
TaqI TCGA 3 cut(s) 19, 463, 504
TasI AATT 6 cut(s) 52, 57, 73, 112, 125, 459
TauI GCSGC 6 cut(s) 67, 283, 405, 527, 530, 669
TfiI GAWTC 2 cut(s) 189, 472
Tru1I TTAA 1 cut(s) 697
Tru9I TTAA 1 cut(s) 697
TscAI CASTG 2 cut(s) 235, 552
TseFI GTSAC 1 cut(s) 571
TseI GCWGC 6 cut(s) 379, 452, 521, 623, 626, 683
Tsp45I GTSAC 1 cut(s) 571
TspDTI ATGAA 1 cut(s) 16
TspGWI ACGGA 2 cut(s) 94, 524
TspMI CCCGGG 1 cut(s) 397
TspRI CASTG 2 cut(s) 235, 552
Tth111I GACNNNGTC 1 cut(s) 260
VpaK11BI GGWCC 3 cut(s) 307, 560, 638
XapI RAATTY 2 cut(s) 73, 459
XmaI CCCGGG 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.