Rorug05G0424500

Pathogenesis-related genes transcriptional activator PTI6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009231
Physical Location & Seq
Reverse (-)
58977718 .. 58984182
6465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0424500.1

Sequence Viewer

Length: 1776 bp
ATGGCGGCATCAACCTCCGGAAGATCGTTGGAGCAAACGCCGACATGGGCTGTCGCCGTCGTCTGTTTTGTTTTGGTTCTAGTCTCAATCATCATCGAATTATGTATCGAACTTATAGCAAAGTGGTTGAAGAGGAAACACAAACGAGCTCTTTACGAAGCTCTAGAAAAGATCAAATCAGAGCTTATGCTATTGGGGTTTATATCGCTGCTGCTGACGGTGGGGCAAGGTCCGATATCGAACATATGCATATCGCAGAAAGTGGGAAGCACGTGGCATCCGTGTAGCCCGGAGGAGGAGGCTAAGATCGTGAAAGAAGAAGATGTTGAAAGCCCGAGTAGGAAACTGCTGGCGGCGTTTGAATCTGGTTATGGAGGTGGAAGCGCACGCCGCGTTTTGGCGGCTGCTGGCACCGACAAATGTGCAGCCAAGGGAAAAGTTCCATTCATATCTGCGGATGGTATTCATCAACTGCATATATTTATCTTCGTCTTGGCTGTTTTCCACGTACTCTATTGCATTCTCACTATGGCTTTAGGAAGAGCCAAGATGAGAAGTTGGAAGAGGTGGGAAAAAGAAACAAGAACGGCTGAATATCAATTTTCACACGATCCAGAGCGGTTCAGATTTGCAAGGGACACATCTTTTGGGAGAAGACATTTAAGTTACTGGACCAAAACACCTTTTCTCATGTGGATTGTTTGTTTTTTCAGACAATTTGTTAGATCAGTTCCCAAAGTTGATTACTTGACCTTGCGGCACGGGTTTATCATGGCACATTTGGCACCTCAAAGCCACCAAAAATTCAATTTCCAAAAGTACATAAACAGATCACTTGAAGAGGATTTCAAGGTGGTAGTGGGAATCAGCCCTCCAATTTGGGGTTTTGCCGTGGTCTTTCTACTCTTTAATACTCATGGCTGGTATTCTTATCTTTGGCTACCCTTTATCCCACTAATTATCATTCTATTGGTGGGAACCAAGCTACAAGTGATCATAACCAAAATGGGTCTTAGAATCCAAGAAAGAGGAGAAGTTGTGAAGGGTACACCAGTTGTTCAACCTGGTGATGACCTCTTCTGGTTTAACCGCCCTCGCCTCATTCTCTACCTCATCAACTTCGTTCTCTTTCAGAATGCCTTCCAACTTGCGTTCTTTGCATGGAGTTGGTATGAATTTTCTTTGAAATCTTGCTTTCACGAGCATACTGAGGATATCATCATCAGAGTTTCAATGGGGGTCCTCATACAAATTCTCTGCAGTTATGTCACTCTCCCACTTTATGCCCTTGTCACACAGATGGGCTCTACTATGAAACCAACAATATTCAACGAGAGAGTAGCCACAGCTCTACGCAACTGGCATCACACGGCTAAGAAGCACATCAAACACAACAAAGGCTCCGTAACCCCAATGTCTAGCCGACCAGGCACTCCATCCCACCATGCTTCCCCCATCCACCTCCTCCGGCATTACCGCAGTGAGGTGGACAGCTTCCACACATCACCGAGAAGATCAAACTTTGACGTTGAACAACGTTATGAAACCGACTCACCCTCCCCCTCGCACCACCTCCACATAGATGGTTCGTTCTCTCACCAACACCAAGTCGAAGTAGGGAACATGGAACATGATCGGGTGGATGCCAACGAACCCAACTCGGTTCATGCAGCTCCCGCTAGCGTTAGAGGTTCGCAATCGACTCCCGCCCAACACGAAATTAATATTGGACCGCCCAAGGACTTTTCATTTGATAAGAGACAAGGTGCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

591

Amino Acids

67.49

Weight (kDa)

9.4

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 7 - 492 4.1e-250 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 410, 784
AccBSI CCGCTC 1 cut(s) 619
AccII CGCG 1 cut(s) 393
AccIII TCCGGA 1 cut(s) 17
AclI AACGTT 1 cut(s) 1537
AclWI GGATC 1 cut(s) 605
AcsI RAATTY 3 cut(s) 803, 1175, 1251
AcvI CACGTG 1 cut(s) 273
AfaI GTAC 3 cut(s) 510, 821, 1048
AfiI CCNNNNNNNGG 4 cut(s) 295, 397, 881, 1483
AjnI CCWGG 2 cut(s) 1063, 1426
AjuI GAANNNNNNNTTGG 2 cut(s) 1710, 1742
AluBI AGCT 7 cut(s) 149, 161, 184, 985, 1349, 1494, 1673
AluI AGCT 7 cut(s) 149, 161, 184, 985, 1349, 1494, 1673
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 2 cut(s) 88, 1753
AlwI GGATC 1 cut(s) 605
Ama87I CYCGRG 1 cut(s) 334
Aor13HI TCCGGA 1 cut(s) 17
ApeKI GCWGC 5 cut(s) 208, 211, 404, 425, 1670
ApoI RAATTY 3 cut(s) 803, 1175, 1251
ArsI GACNNNNNNTTYG 4 cut(s) 629, 661, 1733, 1765
AseI ATTAAT 1 cut(s) 1722
Asp700I GAANNNNTTC 1 cut(s) 1139
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 4 cut(s) 230, 672, 1240, 1730
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 4 cut(s) 1079, 1497, 1545, 1589
AsuNHI GCTAGC 1 cut(s) 1679
AvaI CYCGRG 1 cut(s) 334
AvaII GGWCC 4 cut(s) 230, 672, 1240, 1730
BaeI ACNNNNGTAYC 2 cut(s) 1038, 1071
BanI GGYRCC 2 cut(s) 410, 784
BanII GRGCYC 2 cut(s) 151, 1307
BauI CACGAG 1 cut(s) 1199
BbrPI CACGTG 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 661
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 5 cut(s) 195, 198, 391, 437, 1682
BccI CCATC 5 cut(s) 452, 1294, 1444, 1463, 1577
BceAI ACGGC 4 cut(s) 41, 603, 875, 1386
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BciT130I CCWGG 2 cut(s) 1065, 1428
BclI TGATCA 1 cut(s) 993
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 2 cut(s) 88, 1753
BfaI CTAG 4 cut(s) 80, 164, 1419, 1680
BfmI CTRYAG 1 cut(s) 1258
BglI GCCNNNNNGGC 1 cut(s) 1428
Bme1390I CCNGG 3 cut(s) 290, 1065, 1428
Bme18I GGWCC 4 cut(s) 230, 672, 1240, 1730
BmeT110I CYCGRG 1 cut(s) 334
BmgT120I GGNCC 4 cut(s) 230, 672, 1240, 1730
BmiI GGNNCC 5 cut(s) 412, 786, 979, 1241, 1402
BmrFI CCNGG 3 cut(s) 290, 1065, 1428
BmsI GCATC 4 cut(s) 17, 286, 1372, 1633
BmtI GCTAGC 1 cut(s) 1683
BpiI GAAGAC 1 cut(s) 661
BpuMI CCSGG 1 cut(s) 290
BsaAI YACGTR 2 cut(s) 273, 508
BsaJI CCNNGG 3 cut(s) 429, 891, 1737
BsaWI WCCGGW 1 cut(s) 17
BsaXI ACNNNNNCTCC 6 cut(s) 1023, 1053, 1385, 1415, 1541, 1571
Bsc4I CCNNNNNNNGG 4 cut(s) 295, 397, 881, 1483
Bse1I ACTGG 3 cut(s) 674, 1052, 1364
BseAI TCCGGA 1 cut(s) 17
BseBI CCWGG 2 cut(s) 1065, 1428
BseDI CCNNGG 3 cut(s) 429, 891, 1737
BseGI GGATG 5 cut(s) 277, 463, 1436, 1455, 1648
BseLI CCNNNNNNNGG 4 cut(s) 295, 397, 881, 1483
BseMII CTCAG 1 cut(s) 1200
BseNI ACTGG 3 cut(s) 674, 1052, 1364
BseRI GAGGAG 4 cut(s) 308, 311, 1044, 1454
BseXI GCAGC 5 cut(s) 195, 198, 391, 437, 1682
BsgI GTGCAG 1 cut(s) 444
Bsh1236I CGCG 1 cut(s) 393
BshNI GGYRCC 2 cut(s) 410, 784
BsiHKAI GWGCWC 1 cut(s) 151
BsiHKCI CYCGRG 1 cut(s) 334
BsiSI CCGG 3 cut(s) 18, 290, 1468
BslFI GGGAC 1 cut(s) 650
BslI CCNNNNNNNGG 4 cut(s) 295, 397, 881, 1483
BsmAI GTCTC 2 cut(s) 88, 1753
BsmFI GGGAC 1 cut(s) 650
BsmI GAATGC 2 cut(s) 519, 1141
BsoBI CYCGRG 1 cut(s) 334
Bsp1286I GDGCHC 2 cut(s) 151, 1307
Bsp13I TCCGGA 1 cut(s) 17
Bsp143I GATC 9 cut(s) 23, 171, 306, 610, 725, 830, 993, 1514, 1633
BspCNI CTCAG 1 cut(s) 1201
BspEI TCCGGA 1 cut(s) 17
BspFNI CGCG 1 cut(s) 393
BspLI GGNNCC 5 cut(s) 412, 786, 979, 1241, 1402
BspMAI CTGCAG 1 cut(s) 1262
BspOI GCTAGC 1 cut(s) 1683
BspPI GGATC 1 cut(s) 605
BspQI GCTCTTC 1 cut(s) 535
BspT107I GGYRCC 2 cut(s) 410, 784
BsrBI CCGCTC 1 cut(s) 619
BsrI ACTGG 3 cut(s) 674, 1052, 1364
BssECI CCNNGG 3 cut(s) 429, 891, 1737
BssMI GATC 9 cut(s) 23, 171, 306, 610, 725, 830, 993, 1514, 1633
BssSI CACGAG 1 cut(s) 1199
BssT1I CCWWGG 2 cut(s) 429, 1737
Bst2BI CACGAG 1 cut(s) 1199
Bst2UI CCWGG 2 cut(s) 1065, 1428
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 5 cut(s) 125, 535, 557, 834, 1082
BstBAI YACGTR 2 cut(s) 273, 508
BstC8I GCNNGC 4 cut(s) 351, 388, 409, 1681
BstDEI CTNAG 4 cut(s) 303, 1013, 1209, 1374
BstDSI CCRYGG 1 cut(s) 891
BstF5I GGATG 5 cut(s) 277, 463, 1436, 1455, 1648
BstFNI CGCG 1 cut(s) 393
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 9 cut(s) 26, 174, 309, 613, 728, 833, 996, 1517, 1636
BstMAI GTCTC 2 cut(s) 88, 1753
BstMBI GATC 9 cut(s) 23, 171, 306, 610, 725, 830, 993, 1514, 1633
BstMWI GCNNNNNNNGC 5 cut(s) 390, 782, 1157, 1428, 1676
BstNI CCWGG 2 cut(s) 1065, 1428
BstSCI CCNGG 3 cut(s) 288, 1063, 1426
BstSFI CTRYAG 1 cut(s) 1258
BstUI CGCG 1 cut(s) 393
BstV1I GCAGC 5 cut(s) 195, 198, 391, 437, 1682
BstV2I GAAGAC 1 cut(s) 661
BstXI CCANNNNNNTGG 1 cut(s) 1583
BtgI CCRYGG 1 cut(s) 891
BtsCI GGATG 5 cut(s) 277, 463, 1436, 1455, 1648
BtsI GCAGTG 1 cut(s) 1486
BtsIMutI CAGTG 1 cut(s) 1486
Cac8I GCNNGC 4 cut(s) 351, 388, 409, 1681
CfoI GCGC 1 cut(s) 386
Cfr13I GGNCC 4 cut(s) 230, 672, 1240, 1730
CsiI ACCWGGT 1 cut(s) 1063
Csp6I GTAC 3 cut(s) 509, 820, 1047
CviAII CATG 9 cut(s) 45, 691, 772, 917, 1161, 1445, 1624, 1631, 1667
CviQI GTAC 3 cut(s) 509, 820, 1047
DdeI CTNAG 4 cut(s) 303, 1013, 1209, 1374
DpnI GATC 9 cut(s) 25, 173, 308, 612, 727, 832, 995, 1516, 1635
DpnII GATC 9 cut(s) 23, 171, 306, 610, 725, 830, 993, 1514, 1633
Eam1104I CTCTTC 5 cut(s) 125, 535, 557, 834, 1082
EarI CTCTTC 5 cut(s) 125, 535, 557, 834, 1082
Ecl136II GAGCTC 1 cut(s) 149
Eco130I CCWWGG 2 cut(s) 429, 1737
Eco24I GRGCYC 2 cut(s) 151, 1307
Eco32I GATATC 2 cut(s) 237, 1216
Eco47I GGWCC 4 cut(s) 230, 672, 1240, 1730
Eco53kI GAGCTC 1 cut(s) 149
Eco72I CACGTG 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 334
EcoICRI GAGCTC 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 1240
EcoRII CCWGG 2 cut(s) 1063, 1426
EcoRV GATATC 2 cut(s) 237, 1216
EcoT14I CCWWGG 2 cut(s) 429, 1737
EcoT22I ATGCAT 1 cut(s) 251
EcoT38I GRGCYC 2 cut(s) 151, 1307
ErhI CCWWGG 2 cut(s) 429, 1737
FaeI CATG 9 cut(s) 48, 694, 775, 920, 1164, 1448, 1627, 1634, 1670
FaqI GGGAC 1 cut(s) 650
FatI CATG 9 cut(s) 44, 690, 771, 916, 1160, 1444, 1623, 1630, 1666
FauI CCCGC 2 cut(s) 1684, 1714
FauNDI CATATG 1 cut(s) 245
FbaI TGATCA 1 cut(s) 993
FokI GGATG 5 cut(s) 264, 470, 1423, 1442, 1655
FriOI GRGCYC 2 cut(s) 151, 1307
FspBI CTAG 4 cut(s) 80, 164, 1419, 1680
GlaI GCGC 1 cut(s) 385
HapII CCGG 3 cut(s) 18, 290, 1468
HhaI GCGC 1 cut(s) 386
Hin1II CATG 9 cut(s) 48, 694, 775, 920, 1164, 1448, 1627, 1634, 1670
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HinfI GANTC 5 cut(s) 362, 864, 1017, 1550, 1702
HpaII CCGG 3 cut(s) 18, 290, 1468
HphI GGTGA 4 cut(s) 1079, 1497, 1545, 1589
Hpy166II GTNNAC 2 cut(s) 1049, 1489
Hpy188I TCNGA 6 cut(s) 181, 234, 626, 713, 1134, 1226
Hpy188III TCNNGA 5 cut(s) 18, 164, 310, 614, 1199
Hpy8I GTNNAC 2 cut(s) 1049, 1489
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 2 cut(s) 1036, 1150
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 4 cut(s) 272, 507, 1527, 1537
HpyCH4V TGCA 8 cut(s) 249, 425, 475, 519, 632, 1160, 1260, 1670
HpyF10VI GCNNNNNNNGC 5 cut(s) 390, 782, 1157, 1428, 1676
HpyF3I CTNAG 4 cut(s) 303, 1013, 1209, 1374
HpySE526I ACGT 4 cut(s) 272, 507, 1527, 1537
Hsp92II CATG 9 cut(s) 48, 694, 775, 920, 1164, 1448, 1627, 1634, 1670
HspAI GCGC 1 cut(s) 384
Kpn2I TCCGGA 1 cut(s) 17
Ksp22I TGATCA 1 cut(s) 993
Kzo9I GATC 9 cut(s) 23, 171, 306, 610, 725, 830, 993, 1514, 1633
LguI GCTCTTC 1 cut(s) 535
LmnI GCTCC 3 cut(s) 31, 1406, 1678
Lsp1109I GCAGC 5 cut(s) 195, 198, 391, 437, 1682
LweI GCATC 4 cut(s) 17, 286, 1372, 1633
MabI ACCWGGT 1 cut(s) 1063
MaeI CTAG 4 cut(s) 80, 164, 1419, 1680
MaeII ACGT 4 cut(s) 272, 507, 1527, 1537
MaeIII GTNAC 4 cut(s) 665, 1267, 1291, 1405
MalI GATC 9 cut(s) 25, 173, 308, 612, 727, 832, 995, 1516, 1635
MbiI CCGCTC 1 cut(s) 619
MboI GATC 9 cut(s) 23, 171, 306, 610, 725, 830, 993, 1514, 1633
MhlI GDGCHC 2 cut(s) 151, 1307
MlyI GAGTC 2 cut(s) 1544, 1696
MmeI TCCRAC 3 cut(s) 9, 539, 1168
Mph1103I ATGCAT 1 cut(s) 251
MroI TCCGGA 1 cut(s) 17
MroXI GAANNNNTTC 1 cut(s) 1139
MseI TTAA 4 cut(s) 662, 909, 1086, 1722
MslI CAYNNNNRTG 2 cut(s) 1298, 1581
MspI CCGG 3 cut(s) 18, 290, 1468
MspR9I CCNGG 3 cut(s) 290, 1065, 1428
Mva1269I GAATGC 2 cut(s) 519, 1141
MvaI CCWGG 2 cut(s) 1065, 1428
MvnI CGCG 1 cut(s) 393
MwoI GCNNNNNNNGC 5 cut(s) 390, 782, 1157, 1428, 1676
NciI CCSGG 1 cut(s) 290
NdeI CATATG 1 cut(s) 245
NdeII GATC 9 cut(s) 23, 171, 306, 610, 725, 830, 993, 1514, 1633
NheI GCTAGC 1 cut(s) 1679
NlaIII CATG 9 cut(s) 48, 694, 775, 920, 1164, 1448, 1627, 1634, 1670
NlaIV GGNNCC 5 cut(s) 412, 786, 979, 1241, 1402
NmuCI GTSAC 2 cut(s) 1267, 1291
NsiI ATGCAT 1 cut(s) 251
PciSI GCTCTTC 1 cut(s) 535
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PctI GAATGC 2 cut(s) 519, 1141
PdmI GAANNNNTTC 1 cut(s) 1139
PfeI GAWTC 3 cut(s) 362, 864, 1017
PleI GAGTC 2 cut(s) 1544, 1696
PmaCI CACGTG 1 cut(s) 273
PmlI CACGTG 1 cut(s) 273
PpsI GAGTC 2 cut(s) 1544, 1696
Ppu21I YACGTR 2 cut(s) 273, 508
PpuMI RGGWCCY 1 cut(s) 1240
PshBI ATTAAT 1 cut(s) 1722
Psp124BI GAGCTC 1 cut(s) 151
Psp1406I AACGTT 1 cut(s) 1537
Psp5II RGGWCCY 1 cut(s) 1240
Psp6I CCWGG 2 cut(s) 1063, 1426
PspCI CACGTG 1 cut(s) 273
PspGI CCWGG 2 cut(s) 1063, 1426
PspN4I GGNNCC 5 cut(s) 412, 786, 979, 1241, 1402
PspPI GGNCC 4 cut(s) 230, 672, 1240, 1730
PspPPI RGGWCCY 1 cut(s) 1240
PstI CTGCAG 1 cut(s) 1262
RsaI GTAC 3 cut(s) 510, 821, 1048
RsaNI GTAC 3 cut(s) 509, 820, 1047
RseI CAYNNNNRTG 2 cut(s) 1298, 1581
SacI GAGCTC 1 cut(s) 151
SapI GCTCTTC 1 cut(s) 535
SaqAI TTAA 4 cut(s) 662, 909, 1086, 1722
Sau3AI GATC 9 cut(s) 23, 171, 306, 610, 725, 830, 993, 1514, 1633
Sau96I GGNCC 4 cut(s) 230, 672, 1240, 1730
SchI GAGTC 2 cut(s) 1544, 1696
ScrFI CCNGG 3 cut(s) 290, 1065, 1428
SduI GDGCHC 2 cut(s) 151, 1307
SexAI ACCWGGT 1 cut(s) 1063
SfaNI GCATC 4 cut(s) 17, 286, 1372, 1633
SfcI CTRYAG 1 cut(s) 1258
SinI GGWCC 4 cut(s) 230, 672, 1240, 1730
SmiMI CAYNNNNRTG 2 cut(s) 1298, 1581
SspI AATATT 2 cut(s) 1326, 1726
SspMI CTAG 4 cut(s) 80, 164, 1419, 1680
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 3 cut(s) 288, 1063, 1426
StyI CCWWGG 2 cut(s) 429, 1737
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 4 cut(s) 275, 510, 1530, 1540
TaqI TCGA 5 cut(s) 96, 108, 239, 1611, 1700
TatI WGTACW 1 cut(s) 819
TauI GCSGC 5 cut(s) 8, 356, 393, 404, 760
TfiI GAWTC 3 cut(s) 362, 864, 1017
Tru1I TTAA 4 cut(s) 662, 909, 1086, 1722
Tru9I TTAA 4 cut(s) 662, 909, 1086, 1722
TscAI CASTG 1 cut(s) 1486
TseFI GTSAC 2 cut(s) 1267, 1291
TseI GCWGC 5 cut(s) 208, 211, 404, 425, 1670
Tsp45I GTSAC 2 cut(s) 1267, 1291
TspDTI ATGAA 7 cut(s) 436, 455, 1188, 1328, 1557, 1655, 1737
TspGWI ACGGA 2 cut(s) 270, 1393
TspRI CASTG 1 cut(s) 1486
VpaK11BI GGWCC 4 cut(s) 230, 672, 1240, 1730
VspI ATTAAT 1 cut(s) 1722
XapI RAATTY 3 cut(s) 803, 1175, 1251
XbaI TCTAGA 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 1139
XspI CTAG 4 cut(s) 80, 164, 1419, 1680
Zsp2I ATGCAT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.