MD11G1052100.v1.1

Pathogenesis-related genes transcriptional activator PTI6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0009231
Physical Location & Seq
Forward (+)
4448529 .. 4449446
918 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1052100.v1.1.491

Sequence Viewer

Length: 918 bp
ATGCTCTCGCCGTCGATTCTTCATGTTGCTGCTTCCGACCAAACCCACATCTCCGATTTCATTTCCTCCGCCTCTAAATCCATGACAACCTTCCAACCCACCTCGTCCGCACACTCAGCGGTCAAATTTTCAGAGCAAATCACCACCGTGACAAAACCCATGATCCAGGAACCCGATAACCCGATCCGAGTCCCGCCAAAGCTCGTCCGGATCATCCTCACGGACGCCGACGCCACCGACTCCTCCAGCGACGACGAAGACAGCGGCGTACGCAGAGTCAAACGACATGTCAGACAGATCAGCCTCGAGCTCTCCTCGCCTTCCTCTTCCTCGCCTTCATCTTCGTCGTCGTTTTCTTCGGGTCAGTCGAAGCGGGCCAGGAAAGACCCGAAACCCGTAAAGCGAACCGGGTCGAAATCGCCGGCAATGGATGCATCGCGCCAGAAAAAGTTCAGAGGCGTACGCCGGCGGCCTTGGGGTCGATGGGCTGCGGAGATCCGAGATCCGACTCGTAAAAAACGGGTCTGGCTCGGAACCTTCGACACAGCGGAGGAAGCCGCCAGTGTTTACGACAGAGCTGCCATCCTTCTCAAGGGTCCAGATGCCATCACCAACTTTTCTAACGCCGTTACAACGGAAGAGAAAGTCGTTGCCGATGTGGTGGTCCCAGCTCCTCCGCAGCGATGCGGGTGCGTATCTCCGCCGTCCAGCGAGGCTCTCTCGTCGCCTACCTCGGTCCTCCGTTACGAGGAGCAAACGCCGTTTGATGGTTTCATATACGGAGATGTTGACGACTTCGTGTTTGATATCGACTTGCCGTTAAGCTTTCCAGATATTATGTTGTCGAGTAACAACTTTGTGCGCGACGAGTTCGGCGAGTTTAACGTTGACGATTTCTTAGCTGACGTCGTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

306

Amino Acids

33.46

Weight (kDa)

5.89

Isoelectric Point (pI)

61.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 150 - 199 4.4e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 909
AccII CGCG 2 cut(s) 439, 864
AccIII TCCGGA 1 cut(s) 207
AclI AACGTT 1 cut(s) 885
AclWI GGATC 5 cut(s) 157, 178, 218, 490, 497
AcsI RAATTY 1 cut(s) 125
AcyI GRCGYC 3 cut(s) 225, 231, 906
AfaI GTAC 2 cut(s) 270, 462
AfiI CCNNNNNNNGG 3 cut(s) 592, 748, 767
AflIII ACRYGT 1 cut(s) 286
AjnI CCWGG 2 cut(s) 165, 377
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 6 cut(s) 202, 310, 578, 671, 825, 902
AluI AGCT 6 cut(s) 202, 310, 578, 671, 825, 902
Alw21I GWGCWC 1 cut(s) 312
AlwI GGATC 5 cut(s) 157, 178, 218, 490, 497
Ama87I CYCGRG 1 cut(s) 305
Aor13HI TCCGGA 1 cut(s) 207
AoxI GGCC 2 cut(s) 375, 470
ApeKI GCWGC 4 cut(s) 29, 488, 578, 679
ApoI RAATTY 1 cut(s) 125
ArsI GACNNNNNNTTYG 4 cut(s) 273, 305, 785, 817
Asp700I GAANNNNTTC 1 cut(s) 449
AspLEI GCGC 2 cut(s) 441, 864
AspS9I GGNCC 4 cut(s) 375, 596, 664, 736
AsuC2I CCSGG 1 cut(s) 409
AsuHPI GGTGA 2 cut(s) 133, 601
AvaI CYCGRG 1 cut(s) 305
AvaII GGWCC 3 cut(s) 596, 664, 736
BanII GRGCYC 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 4 cut(s) 16, 475, 565, 691
BccI CCATC 4 cut(s) 477, 590, 614, 761
BceAI ACGGC 4 cut(s) 611, 688, 745, 802
BcgI CGANNNNNNTGC 4 cut(s) 560, 594, 672, 706
BciT130I CCWGG 2 cut(s) 167, 379
BcnI CCSGG 1 cut(s) 409
BisI GCNGC 7 cut(s) 30, 265, 470, 489, 558, 579, 680
BlsI GCNGC 7 cut(s) 31, 266, 471, 490, 559, 580, 681
Bme1390I CCNGG 3 cut(s) 167, 379, 409
Bme18I GGWCC 3 cut(s) 596, 664, 736
BmeT110I CYCGRG 1 cut(s) 305
BmgT120I GGNCC 4 cut(s) 375, 596, 664, 736
BmiI GGNNCC 4 cut(s) 171, 535, 597, 666
BmrFI CCNGG 3 cut(s) 167, 379, 409
BmsI GCATC 4 cut(s) 421, 443, 592, 674
BpiI GAAGAC 1 cut(s) 264
BplI GAGNNNNNCTC 4 cut(s) 299, 331, 704, 736
BpmI CTGGAG 1 cut(s) 229
BpuEI CTTGAG 1 cut(s) 575
BpuMI CCSGG 1 cut(s) 409
BsaHI GRCGYC 3 cut(s) 225, 231, 906
BsaJI CCNNGG 2 cut(s) 473, 732
BsaWI WCCGGW 1 cut(s) 207
Bsc4I CCNNNNNNNGG 3 cut(s) 592, 748, 767
Bse118I RCCGGY 2 cut(s) 421, 465
Bse1I ACTGG 1 cut(s) 561
Bse3DI GCAATG 1 cut(s) 432
BseAI TCCGGA 1 cut(s) 207
BseBI CCWGG 2 cut(s) 167, 379
BseDI CCNNGG 2 cut(s) 473, 732
BseGI GGATG 3 cut(s) 213, 436, 582
BseLI CCNNNNNNNGG 3 cut(s) 592, 748, 767
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 561
BseRI GAGGAG 4 cut(s) 232, 304, 663, 764
BseXI GCAGC 4 cut(s) 16, 475, 565, 691
BseYI CCCAGC 1 cut(s) 667
Bsh1236I CGCG 2 cut(s) 439, 864
BshFI GGCC 2 cut(s) 377, 472
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 4 cut(s) 208, 408, 422, 466
BsiWI CGTACG 2 cut(s) 268, 460
BslFI GGGAC 2 cut(s) 176, 650
BslI CCNNNNNNNGG 3 cut(s) 592, 748, 767
BsmFI GGGAC 2 cut(s) 176, 650
BsnI GGCC 2 cut(s) 377, 472
BsoBI CYCGRG 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 312
Bsp13I TCCGGA 1 cut(s) 207
Bsp143I GATC 6 cut(s) 162, 183, 210, 297, 495, 502
BspANI GGCC 2 cut(s) 377, 472
BspCNI CTCAG 1 cut(s) 128
BspEI TCCGGA 1 cut(s) 207
BspFNI CGCG 2 cut(s) 439, 864
BspLI GGNNCC 4 cut(s) 171, 535, 597, 666
BspPI GGATC 5 cut(s) 157, 178, 218, 490, 497
BsrDI GCAATG 1 cut(s) 432
BsrFI RCCGGY 2 cut(s) 421, 465
BsrI ACTGG 1 cut(s) 561
BssAI RCCGGY 2 cut(s) 421, 465
BssECI CCNNGG 2 cut(s) 473, 732
BssMI GATC 6 cut(s) 162, 183, 210, 297, 495, 502
BssNI GRCGYC 3 cut(s) 225, 231, 906
BssT1I CCWWGG 1 cut(s) 473
Bst2UI CCWGG 2 cut(s) 167, 379
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 2 cut(s) 331, 633
BstACI GRCGYC 3 cut(s) 225, 231, 906
BstAPI GCANNNNNTGC 1 cut(s) 431
BstC8I GCNNGC 3 cut(s) 375, 423, 467
BstDEI CTNAG 2 cut(s) 115, 898
BstENI CCTNNNNNAGG 1 cut(s) 590
BstF5I GGATG 3 cut(s) 213, 436, 582
BstFNI CGCG 2 cut(s) 439, 864
BstHHI GCGC 2 cut(s) 441, 864
BstKTI GATC 6 cut(s) 165, 186, 213, 300, 498, 505
BstMBI GATC 6 cut(s) 162, 183, 210, 297, 495, 502
BstMWI GCNNNNNNNGC 5 cut(s) 116, 270, 316, 431, 554
BstNI CCWGG 2 cut(s) 167, 379
BstNSI RCATGY 1 cut(s) 290
BstSCI CCNGG 3 cut(s) 165, 377, 407
BstUI CGCG 2 cut(s) 439, 864
BstV1I GCAGC 4 cut(s) 16, 475, 565, 691
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 2 cut(s) 495, 502
BstYI RGATCY 2 cut(s) 495, 502
BsuRI GGCC 2 cut(s) 377, 472
BtgZI GCGATG 2 cut(s) 420, 697
BtsCI GGATG 3 cut(s) 213, 436, 582
BtsIMutI CAGTG 1 cut(s) 568
Cac8I GCNNGC 3 cut(s) 375, 423, 467
CfoI GCGC 2 cut(s) 441, 864
Cfr10I RCCGGY 2 cut(s) 421, 465
Cfr13I GGNCC 4 cut(s) 375, 596, 664, 736
CseI GACGC 2 cut(s) 233, 239
Csp6I GTAC 2 cut(s) 269, 461
CviAII CATG 4 cut(s) 23, 82, 160, 287
CviQI GTAC 2 cut(s) 269, 461
DdeI CTNAG 2 cut(s) 115, 898
DpnI GATC 6 cut(s) 164, 185, 212, 299, 497, 504
DpnII GATC 6 cut(s) 162, 183, 210, 297, 495, 502
Eam1104I CTCTTC 2 cut(s) 331, 633
EarI CTCTTC 2 cut(s) 331, 633
EciI GGCGGA 2 cut(s) 58, 690
Ecl136II GAGCTC 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 473
Eco24I GRGCYC 1 cut(s) 312
Eco32I GATATC 1 cut(s) 808
Eco47I GGWCC 3 cut(s) 596, 664, 736
Eco53kI GAGCTC 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 310
EcoNI CCTNNNNNAGG 1 cut(s) 590
EcoRII CCWGG 2 cut(s) 165, 377
EcoRV GATATC 1 cut(s) 808
EcoT14I CCWWGG 1 cut(s) 473
EcoT22I ATGCAT 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 473
FaeI CATG 4 cut(s) 26, 85, 163, 290
FaiI YATR 7 cut(s) 24, 83, 161, 288, 776, 778, 839
FaqI GGGAC 2 cut(s) 176, 650
FatI CATG 4 cut(s) 22, 81, 159, 286
FauI CCCGC 3 cut(s) 201, 366, 680
Fnu4HI GCNGC 7 cut(s) 30, 265, 470, 489, 558, 579, 680
FokI GGATG 3 cut(s) 200, 443, 569
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 7 cut(s) 30, 265, 470, 489, 558, 579, 680
GlaI GCGC 2 cut(s) 440, 863
GluI GCNGC 7 cut(s) 30, 265, 470, 489, 558, 579, 680
GsaI CCCAGC 1 cut(s) 671
GsuI CTGGAG 1 cut(s) 229
HaeIII GGCC 2 cut(s) 377, 472
HapII CCGG 4 cut(s) 208, 408, 422, 466
HgaI GACGC 2 cut(s) 233, 239
HhaI GCGC 2 cut(s) 441, 864
Hin1I GRCGYC 3 cut(s) 225, 231, 906
Hin1II CATG 4 cut(s) 26, 85, 163, 290
Hin6I GCGC 2 cut(s) 439, 862
HinP1I GCGC 2 cut(s) 439, 862
HincII GTYRAC 2 cut(s) 790, 889
HindII GTYRAC 2 cut(s) 790, 889
HindIII AAGCTT 1 cut(s) 823
HinfI GANTC 5 cut(s) 16, 189, 239, 276, 508
HpaII CCGG 4 cut(s) 208, 408, 422, 466
HphI GGTGA 2 cut(s) 133, 601
Hpy166II GTNNAC 3 cut(s) 568, 790, 889
Hpy188I TCNGA 9 cut(s) 37, 55, 133, 188, 293, 455, 500, 507, 533
Hpy188III TCNNGA 3 cut(s) 208, 599, 830
Hpy8I GTNNAC 3 cut(s) 568, 790, 889
Hpy99I CGWCG 9 cut(s) 16, 233, 254, 257, 349, 352, 727, 869, 911
HpyAV CCTTC 5 cut(s) 100, 330, 345, 547, 596
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 2 cut(s) 885, 906
HpyCH4V TGCA 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 5 cut(s) 116, 270, 316, 431, 554
HpyF3I CTNAG 2 cut(s) 115, 898
HpySE526I ACGT 2 cut(s) 885, 906
Hsp92I GRCGYC 3 cut(s) 225, 231, 906
Hsp92II CATG 4 cut(s) 26, 85, 163, 290
HspAI GCGC 2 cut(s) 439, 862
Kpn2I TCCGGA 1 cut(s) 207
KroI GCCGGC 2 cut(s) 421, 465
KroNI GCCGGC 2 cut(s) 423, 467
Kzo9I GATC 6 cut(s) 162, 183, 210, 297, 495, 502
LmnI GCTCC 2 cut(s) 676, 751
Lsp1109I GCAGC 4 cut(s) 16, 475, 565, 691
LweI GCATC 4 cut(s) 421, 443, 592, 674
MaeII ACGT 2 cut(s) 885, 906
MaeIII GTNAC 4 cut(s) 148, 628, 743, 848
MalI GATC 6 cut(s) 164, 185, 212, 299, 497, 504
MboI GATC 6 cut(s) 162, 183, 210, 297, 495, 502
MboII GAAGA 6 cut(s) 11, 269, 318, 333, 348, 650
MflI RGATCY 2 cut(s) 495, 502
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 1 cut(s) 125
MlyI GAGTC 4 cut(s) 198, 233, 285, 502
MmeI TCCRAC 3 cut(s) 60, 118, 530
Mph1103I ATGCAT 1 cut(s) 436
MreI CGCCGGCG 1 cut(s) 465
MroI TCCGGA 1 cut(s) 207
MroNI GCCGGC 2 cut(s) 421, 465
MroXI GAANNNNTTC 1 cut(s) 449
MseI TTAA 2 cut(s) 821, 882
MslI CAYNNNNRTG 1 cut(s) 146
MspA1I CMGCKG 3 cut(s) 119, 264, 548
MspI CCGG 4 cut(s) 208, 408, 422, 466
MspR9I CCNGG 3 cut(s) 167, 379, 409
MvaI CCWGG 2 cut(s) 167, 379
MvnI CGCG 2 cut(s) 439, 864
MwoI GCNNNNNNNGC 5 cut(s) 116, 270, 316, 431, 554
NaeI GCCGGC 2 cut(s) 423, 467
NciI CCSGG 1 cut(s) 409
NdeII GATC 6 cut(s) 162, 183, 210, 297, 495, 502
NgoMIV GCCGGC 2 cut(s) 421, 465
NlaIII CATG 4 cut(s) 26, 85, 163, 290
NlaIV GGNNCC 4 cut(s) 171, 535, 597, 666
NmuCI GTSAC 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 436
NspI RCATGY 1 cut(s) 290
OliI CACNNNNGTG 1 cut(s) 146
PaeR7I CTCGAG 1 cut(s) 305
PciI ACATGT 1 cut(s) 286
PcsI WCGNNNNNNNCGW 3 cut(s) 365, 537, 873
PdiI GCCGGC 2 cut(s) 423, 467
PdmI GAANNNNTTC 1 cut(s) 449
PfeI GAWTC 1 cut(s) 16
Pfl23II CGTACG 2 cut(s) 268, 460
PfoI TCCNGGA 1 cut(s) 165
PkrI GCNGC 7 cut(s) 31, 266, 471, 490, 559, 580, 681
PleI GAGTC 4 cut(s) 197, 233, 284, 502
PpsI GAGTC 4 cut(s) 197, 233, 284, 502
PscI ACATGT 1 cut(s) 286
Psp124BI GAGCTC 1 cut(s) 312
Psp1406I AACGTT 1 cut(s) 885
Psp6I CCWGG 2 cut(s) 165, 377
PspFI CCCAGC 1 cut(s) 667
PspGI CCWGG 2 cut(s) 165, 377
PspLI CGTACG 2 cut(s) 268, 460
PspN4I GGNNCC 4 cut(s) 171, 535, 597, 666
PspPI GGNCC 4 cut(s) 375, 596, 664, 736
PspXI VCTCGAGB 1 cut(s) 305
PsuI RGATCY 2 cut(s) 495, 502
RsaI GTAC 2 cut(s) 270, 462
RsaNI GTAC 2 cut(s) 269, 461
RseI CAYNNNNRTG 1 cut(s) 146
SacI GAGCTC 1 cut(s) 312
SaqAI TTAA 2 cut(s) 821, 882
SatI GCNGC 7 cut(s) 30, 265, 470, 489, 558, 579, 680
Sau3AI GATC 6 cut(s) 162, 183, 210, 297, 495, 502
Sau96I GGNCC 4 cut(s) 375, 596, 664, 736
SchI GAGTC 4 cut(s) 198, 233, 285, 502
ScrFI CCNGG 3 cut(s) 167, 379, 409
SduI GDGCHC 1 cut(s) 312
SfaNI GCATC 4 cut(s) 421, 443, 592, 674
Sfr274I CTCGAG 1 cut(s) 305
SgrAI CRCCGGYG 1 cut(s) 465
SinI GGWCC 3 cut(s) 596, 664, 736
SlaI CTCGAG 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 2 cut(s) 305, 590
SmoI CTYRAG 2 cut(s) 305, 590
Sse9I AATT 1 cut(s) 125
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 3 cut(s) 165, 377, 407
StyI CCWWGG 1 cut(s) 473
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 2 cut(s) 888, 909
TaqI TCGA 8 cut(s) 14, 306, 368, 413, 481, 540, 810, 845
TaqII GACCGA 1 cut(s) 724
TasI AATT 1 cut(s) 125
TauI GCSGC 3 cut(s) 267, 472, 560
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 2 cut(s) 821, 882
Tru9I TTAA 2 cut(s) 821, 882
TscAI CASTG 1 cut(s) 568
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 4 cut(s) 29, 488, 578, 679
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 4 cut(s) 11, 49, 327, 763
TspGWI ACGGA 4 cut(s) 236, 650, 731, 795
TspRI CASTG 1 cut(s) 568
VpaK11BI GGWCC 3 cut(s) 596, 664, 736
XagI CCTNNNNNAGG 1 cut(s) 590
XapI RAATTY 1 cut(s) 125
XceI RCATGY 1 cut(s) 290
XhoI CTCGAG 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 449
ZraI GACGTC 1 cut(s) 907
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.