RLG00000036391

Pathogenesis-related genes transcriptional activator PTI6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009231
Physical Location & Seq
Reverse (-)
79936007 .. 79937278
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036391

Sequence Viewer

Length: 912 bp
ATGGCGAAATTCTCAGAGCACTTTATCTCAGTGAGCAAGCTCGTTCACGAAAATTCCCAAAATACCCATCTTGAATCCCGGAGGGTGCTGCAGAAGCGGGTTCGGATCATCCTCACCGACCCGGACGCCACCGACTCCGACAGCGACGACGATGAGAGCTCCGCCGTGCGCAGAGTGAAACGACATGTCAAGGAGATCAAGTTGGAGCCAGCTTCCTCTTCTTTCAAGCTGCTGCCGAAGAGAGAACAGCCCGAGGCCCGACCCGATCCGAAGTTACCGAAATCGGATCCGGCCCGGAAGAAGCATTTCAGGGGAGTTCGGCAGAGGCCCTGGGGTCGTTGGGCCGCGGAGATCCGCGACCCGATCCAACGGAAGCGGCTCTGGCTCGGGACTTTCAACACCGCCGAGGAAGCCGCCATTATATACGACAGAGCGGCCGTGAAGCTCAGAGGTCCTGACGCCGTCACCAACTTTCCTAACGCCGTTACAACGGAAGAGACCGTTGTTGCTGAGGAGGTTGTCGTCCCCGCCACGCATGAAGAGGAAAGAAGCATCGGCTCGACTGTCACGTGTGACTCGTCTCCCAATGAAGAACCGGCGTCATCTCCCACGTCGGTCCTCCGTTACGACGATCCCGCCCCCTTTGACGGGTTCCGTTACTGCGACTTCCACTCTTGCGGGTTCGAATACGACGTGCCGTTGCTGAACCTGCCGGACATAATGGTCCCGGCGAGCAACAACTTTAACCACGACGAGTTCGGCGAGTTTGACGTCAACGACTTCCTTGCCGACGTCATCTCTGTTGGACTAGGAACAGGAGCAGAAGCCGAGGGTGCGCTGAAATTCCGAATATGCCCCGAGTTGTTCCTGGTCAAACCACGGAATGTGATTAGTGGGATATATGAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

304

Amino Acids

34.14

Weight (kDa)

5.4

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 102 - 151 5.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 722
AatII GACGTC 2 cut(s) 774, 795
Acc16I TGCGCA 1 cut(s) 170
Acc36I ACCTGC 1 cut(s) 717
AccBSI CCGCTC 1 cut(s) 434
AccII CGCG 2 cut(s) 347, 357
AclWI GGATC 7 cut(s) 113, 260, 281, 294, 346, 358, 626
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 3 cut(s) 8, 52, 842
AcvI CACGTG 1 cut(s) 570
AcyI GRCGYC 5 cut(s) 126, 459, 599, 771, 792
AfiI CCNNNNNNNGG 2 cut(s) 647, 648
AflIII ACRYGT 2 cut(s) 184, 569
AgsI TTSAA 3 cut(s) 74, 226, 397
AjiI CACGTC 2 cut(s) 612, 694
AjnI CCWGG 2 cut(s) 329, 867
AluBI AGCT 5 cut(s) 40, 159, 212, 229, 445
AluI AGCT 5 cut(s) 40, 159, 212, 229, 445
Alw21I GWGCWC 2 cut(s) 21, 161
Alw26I GTCTC 2 cut(s) 491, 585
AlwI GGATC 7 cut(s) 113, 260, 281, 294, 346, 358, 626
Ama87I CYCGRG 3 cut(s) 251, 386, 857
AoxI GGCC 5 cut(s) 255, 291, 326, 342, 435
ApeKI GCWGC 3 cut(s) 88, 229, 232
ApoI RAATTY 3 cut(s) 8, 52, 842
Asp700I GAANNNNTTC 1 cut(s) 305
AspLEI GCGC 2 cut(s) 171, 838
AspS9I GGNCC 7 cut(s) 256, 292, 327, 342, 452, 616, 724
AsuC2I CCSGG 4 cut(s) 79, 122, 295, 728
AsuHPI GGTGA 2 cut(s) 106, 457
AsuII TTCGAA 1 cut(s) 684
AvaI CYCGRG 3 cut(s) 251, 386, 857
AvaII GGWCC 3 cut(s) 452, 616, 724
BamHI GGATCC 1 cut(s) 286
BanII GRGCYC 1 cut(s) 161
BbrPI CACGTG 1 cut(s) 570
Bbv12I GWGCWC 2 cut(s) 21, 161
BbvCI CCTCAGC 1 cut(s) 510
BbvI GCAGC 3 cut(s) 75, 216, 219
BccI CCATC 1 cut(s) 75
BceAI ACGGC 5 cut(s) 149, 422, 446, 467, 682
BcgI CGANNNNNNTGC 2 cut(s) 767, 801
BciT130I CCWGG 2 cut(s) 331, 869
BcnI CCSGG 4 cut(s) 79, 122, 295, 728
BcoDI GTCTC 2 cut(s) 491, 585
BfaI CTAG 1 cut(s) 809
BfmI CTRYAG 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 717
BisI GCNGC 7 cut(s) 89, 230, 233, 345, 377, 414, 435
BlsI GCNGC 7 cut(s) 90, 231, 234, 346, 378, 415, 436
Bme1390I CCNGG 6 cut(s) 79, 122, 295, 331, 728, 869
Bme18I GGWCC 3 cut(s) 452, 616, 724
BmeT110I CYCGRG 3 cut(s) 251, 386, 857
BmgBI CACGTC 2 cut(s) 612, 694
BmgT120I GGNCC 7 cut(s) 256, 292, 327, 342, 452, 616, 724
BmiI GGNNCC 4 cut(s) 207, 288, 653, 726
BmrFI CCNGG 6 cut(s) 79, 122, 295, 331, 728, 869
BmsI GCATC 1 cut(s) 561
Bpu10I CCTNAGC 1 cut(s) 510
Bpu14I TTCGAA 1 cut(s) 684
BpuMI CCSGG 4 cut(s) 79, 122, 295, 728
BsaAI YACGTR 1 cut(s) 570
BsaHI GRCGYC 5 cut(s) 126, 459, 599, 771, 792
BsaI GGTCTC 1 cut(s) 491
BsaJI CCNNGG 7 cut(s) 252, 329, 330, 345, 405, 828, 878
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 2 cut(s) 647, 648
Bse118I RCCGGY 1 cut(s) 595
BseBI CCWGG 2 cut(s) 331, 869
BseDI CCNNGG 7 cut(s) 252, 329, 330, 345, 405, 828, 878
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 647, 648
BseMII CTCAG 4 cut(s) 27, 42, 460, 501
BseRI GAGGAG 1 cut(s) 527
BseX3I CGGCCG 1 cut(s) 435
BseXI GCAGC 3 cut(s) 75, 216, 219
Bsh1236I CGCG 2 cut(s) 347, 357
Bsh1285I CGRYCG 1 cut(s) 438
BshFI GGCC 5 cut(s) 257, 293, 328, 344, 437
BsiEI CGRYCG 1 cut(s) 438
BsiHKAI GWGCWC 2 cut(s) 21, 161
BsiHKCI CYCGRG 3 cut(s) 251, 386, 857
BsiSI CCGG 7 cut(s) 79, 122, 290, 295, 596, 713, 728
BslFI GGGAC 3 cut(s) 403, 509, 710
BslI CCNNNNNNNGG 2 cut(s) 647, 648
BsmAI GTCTC 2 cut(s) 491, 585
BsmBI CGTCTC 1 cut(s) 585
BsmFI GGGAC 3 cut(s) 403, 509, 710
BsnI GGCC 5 cut(s) 257, 293, 328, 344, 437
Bso31I GGTCTC 1 cut(s) 491
BsoBI CYCGRG 3 cut(s) 251, 386, 857
Bsp119I TTCGAA 1 cut(s) 684
Bsp1286I GDGCHC 2 cut(s) 21, 161
Bsp143I GATC 7 cut(s) 105, 195, 265, 286, 351, 363, 631
BspANI GGCC 5 cut(s) 257, 293, 328, 344, 437
BspCNI CTCAG 4 cut(s) 26, 41, 459, 502
BspFNI CGCG 2 cut(s) 347, 357
BspLI GGNNCC 4 cut(s) 207, 288, 653, 726
BspMAI CTGCAG 1 cut(s) 93
BspMI ACCTGC 1 cut(s) 717
BspPI GGATC 7 cut(s) 113, 260, 281, 294, 346, 358, 626
BspT104I TTCGAA 1 cut(s) 684
BspTNI GGTCTC 1 cut(s) 491
BsrBI CCGCTC 1 cut(s) 434
BsrFI RCCGGY 1 cut(s) 595
BssAI RCCGGY 1 cut(s) 595
BssECI CCNNGG 7 cut(s) 252, 329, 330, 345, 405, 828, 878
BssMI GATC 7 cut(s) 105, 195, 265, 286, 351, 363, 631
BssNI GRCGYC 5 cut(s) 126, 459, 599, 771, 792
Bst2UI CCWGG 2 cut(s) 331, 869
Bst4CI ACNGT 2 cut(s) 502, 565
Bst6I CTCTTC 4 cut(s) 223, 233, 489, 534
BstACI GRCGYC 5 cut(s) 126, 459, 599, 771, 792
BstBAI YACGTR 1 cut(s) 570
BstBI TTCGAA 1 cut(s) 684
BstC8I GCNNGC 3 cut(s) 38, 210, 733
BstDEI CTNAG 4 cut(s) 13, 28, 446, 510
BstDSI CCRYGG 2 cut(s) 345, 878
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 2 cut(s) 347, 357
BstHHI GCGC 2 cut(s) 171, 838
BstKTI GATC 7 cut(s) 108, 198, 268, 289, 354, 366, 634
BstMAI GTCTC 2 cut(s) 491, 585
BstMBI GATC 7 cut(s) 105, 195, 265, 286, 351, 363, 631
BstMCI CGRYCG 1 cut(s) 438
BstMWI GCNNNNNNNGC 5 cut(s) 94, 382, 410, 709, 833
BstNI CCWGG 2 cut(s) 331, 869
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 6 cut(s) 77, 120, 293, 329, 726, 867
BstSFI CTRYAG 1 cut(s) 89
BstUI CGCG 2 cut(s) 347, 357
BstV1I GCAGC 3 cut(s) 75, 216, 219
BstX2I RGATCY 2 cut(s) 286, 351
BstYI RGATCY 2 cut(s) 286, 351
BstZI CGGCCG 1 cut(s) 435
BsuRI GGCC 5 cut(s) 257, 293, 328, 344, 437
BtgI CCRYGG 2 cut(s) 345, 878
BtrI CACGTC 2 cut(s) 612, 694
BtsCI GGATG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 717
Cac8I GCNNGC 3 cut(s) 38, 210, 733
CfoI GCGC 2 cut(s) 171, 838
Cfr10I RCCGGY 1 cut(s) 595
Cfr13I GGNCC 7 cut(s) 256, 292, 327, 342, 452, 616, 724
Cfr42I CCGCGG 1 cut(s) 348
CseI GACGC 3 cut(s) 134, 467, 588
CviAII CATG 2 cut(s) 185, 536
DdeI CTNAG 4 cut(s) 13, 28, 446, 510
DpnI GATC 7 cut(s) 107, 197, 267, 288, 353, 365, 633
DpnII GATC 7 cut(s) 105, 195, 265, 286, 351, 363, 631
DrdI GACNNNNNNGTC 1 cut(s) 722
DseDI GACNNNNNNGTC 1 cut(s) 722
EaeI YGGCCR 1 cut(s) 435
EagI CGGCCG 1 cut(s) 435
Eam1104I CTCTTC 4 cut(s) 223, 233, 489, 534
EarI CTCTTC 4 cut(s) 223, 233, 489, 534
EciI GGCGGA 1 cut(s) 151
Ecl136II GAGCTC 1 cut(s) 159
EclXI CGGCCG 1 cut(s) 435
Eco24I GRGCYC 1 cut(s) 161
Eco31I GGTCTC 1 cut(s) 491
Eco47I GGWCC 3 cut(s) 452, 616, 724
Eco52I CGGCCG 1 cut(s) 435
Eco53kI GAGCTC 1 cut(s) 159
Eco72I CACGTG 1 cut(s) 570
Eco88I CYCGRG 3 cut(s) 251, 386, 857
EcoICRI GAGCTC 1 cut(s) 159
EcoO109I RGGNCCY 2 cut(s) 327, 452
EcoRII CCWGG 2 cut(s) 329, 867
EcoT38I GRGCYC 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 585
FaeI CATG 2 cut(s) 188, 539
FaiI YATR 8 cut(s) 186, 422, 424, 537, 719, 853, 901, 903
FaqI GGGAC 3 cut(s) 403, 509, 710
FatI CATG 2 cut(s) 184, 535
FauI CCCGC 4 cut(s) 90, 535, 643, 671
Fnu4HI GCNGC 7 cut(s) 89, 230, 233, 345, 377, 414, 435
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 7 cut(s) 89, 230, 233, 345, 377, 414, 435
FspBI CTAG 1 cut(s) 809
FspI TGCGCA 1 cut(s) 170
GlaI GCGC 2 cut(s) 170, 837
GluI GCNGC 7 cut(s) 89, 230, 233, 345, 377, 414, 435
HaeIII GGCC 5 cut(s) 257, 293, 328, 344, 437
HapII CCGG 7 cut(s) 79, 122, 290, 295, 596, 713, 728
HgaI GACGC 3 cut(s) 134, 467, 588
HhaI GCGC 2 cut(s) 171, 838
Hin1I GRCGYC 5 cut(s) 126, 459, 599, 771, 792
Hin1II CATG 2 cut(s) 188, 539
Hin6I GCGC 2 cut(s) 169, 836
HinP1I GCGC 2 cut(s) 169, 836
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HinfI GANTC 3 cut(s) 74, 134, 575
HpaII CCGG 7 cut(s) 79, 122, 290, 295, 596, 713, 728
HphI GGTGA 2 cut(s) 106, 457
Hpy166II GTNNAC 2 cut(s) 46, 775
Hpy188I TCNGA 7 cut(s) 16, 105, 139, 270, 286, 449, 848
Hpy188III TCNNGA 4 cut(s) 47, 71, 388, 455
Hpy8I GTNNAC 2 cut(s) 46, 775
Hpy99I CGWCG 7 cut(s) 149, 152, 616, 632, 695, 755, 794
HpyCH4III ACNGT 2 cut(s) 502, 565
HpyCH4IV ACGT 5 cut(s) 569, 611, 693, 771, 792
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 5 cut(s) 94, 382, 410, 709, 833
HpyF3I CTNAG 4 cut(s) 13, 28, 446, 510
HpySE526I ACGT 5 cut(s) 569, 611, 693, 771, 792
Hsp92I GRCGYC 5 cut(s) 126, 459, 599, 771, 792
Hsp92II CATG 2 cut(s) 188, 539
HspAI GCGC 2 cut(s) 169, 836
KspI CCGCGG 1 cut(s) 348
Kzo9I GATC 7 cut(s) 105, 195, 265, 286, 351, 363, 631
LmnI GCTCC 3 cut(s) 164, 205, 818
Lsp1109I GCAGC 3 cut(s) 75, 216, 219
LweI GCATC 1 cut(s) 561
MaeI CTAG 1 cut(s) 809
MaeII ACGT 5 cut(s) 569, 611, 693, 771, 792
MaeIII GTNAC 7 cut(s) 273, 463, 484, 565, 572, 623, 656
MalI GATC 7 cut(s) 107, 197, 267, 288, 353, 365, 633
MbiI CCGCTC 1 cut(s) 434
MboI GATC 7 cut(s) 105, 195, 265, 286, 351, 363, 631
MboII GAAGA 6 cut(s) 210, 250, 310, 506, 551, 602
MflI RGATCY 2 cut(s) 286, 351
MhlI GDGCHC 2 cut(s) 21, 161
MluCI AATT 3 cut(s) 8, 52, 842
MlyI GAGTC 2 cut(s) 128, 569
MmeI TCCRAC 4 cut(s) 162, 183, 391, 784
MroXI GAANNNNTTC 1 cut(s) 305
MseI TTAA 1 cut(s) 744
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 7 cut(s) 79, 122, 290, 295, 596, 713, 728
MspR9I CCNGG 6 cut(s) 79, 122, 295, 331, 728, 869
MvaI CCWGG 2 cut(s) 331, 869
MvnI CGCG 2 cut(s) 347, 357
MwoI GCNNNNNNNGC 5 cut(s) 94, 382, 410, 709, 833
NciI CCSGG 4 cut(s) 79, 122, 295, 728
NdeII GATC 7 cut(s) 105, 195, 265, 286, 351, 363, 631
NlaIII CATG 2 cut(s) 188, 539
NlaIV GGNNCC 4 cut(s) 207, 288, 653, 726
NmeAIII GCCGAG 2 cut(s) 430, 853
NmuCI GTSAC 3 cut(s) 463, 565, 572
NsbI TGCGCA 1 cut(s) 170
NspI RCATGY 1 cut(s) 188
NspV TTCGAA 1 cut(s) 684
PasI CCCWGGG 1 cut(s) 330
PciI ACATGT 1 cut(s) 184
PcsI WCGNNNNNNNCGW 4 cut(s) 566, 575, 690, 759
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 74
PflFI GACNNNGTC 1 cut(s) 461
PfoI TCCNGGA 1 cut(s) 77
PkrI GCNGC 7 cut(s) 90, 231, 234, 346, 378, 415, 436
PleI GAGTC 2 cut(s) 128, 569
PmaCI CACGTG 1 cut(s) 570
PmlI CACGTG 1 cut(s) 570
PpsI GAGTC 2 cut(s) 128, 569
Ppu21I YACGTR 1 cut(s) 570
PpuMI RGGWCCY 1 cut(s) 452
PscI ACATGT 1 cut(s) 184
Psp124BI GAGCTC 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 2 cut(s) 329, 867
PspCI CACGTG 1 cut(s) 570
PspGI CCWGG 2 cut(s) 329, 867
PspN4I GGNNCC 4 cut(s) 207, 288, 653, 726
PspPI GGNCC 7 cut(s) 256, 292, 327, 342, 452, 616, 724
PspPPI RGGWCCY 1 cut(s) 452
PstI CTGCAG 1 cut(s) 93
PsuI RGATCY 2 cut(s) 286, 351
PsyI GACNNNGTC 1 cut(s) 461
SacI GAGCTC 1 cut(s) 161
SacII CCGCGG 1 cut(s) 348
SaqAI TTAA 1 cut(s) 744
SatI GCNGC 7 cut(s) 89, 230, 233, 345, 377, 414, 435
Sau3AI GATC 7 cut(s) 105, 195, 265, 286, 351, 363, 631
Sau96I GGNCC 7 cut(s) 256, 292, 327, 342, 452, 616, 724
SchI GAGTC 2 cut(s) 128, 569
ScrFI CCNGG 6 cut(s) 79, 122, 295, 331, 728, 869
SduI GDGCHC 2 cut(s) 21, 161
SfaNI GCATC 1 cut(s) 561
SfcI CTRYAG 1 cut(s) 89
Sfr303I CCGCGG 1 cut(s) 348
SfuI TTCGAA 1 cut(s) 684
SgrBI CCGCGG 1 cut(s) 348
SinI GGWCC 3 cut(s) 452, 616, 724
Sse9I AATT 3 cut(s) 8, 52, 842
SspMI CTAG 1 cut(s) 809
SstI GAGCTC 1 cut(s) 161
StyD4I CCNGG 6 cut(s) 77, 120, 293, 329, 726, 867
TaaI ACNGT 2 cut(s) 502, 565
TaiI ACGT 5 cut(s) 572, 614, 696, 774, 795
TaqI TCGA 2 cut(s) 560, 684
TaqII GACCGA 1 cut(s) 604
TasI AATT 3 cut(s) 8, 52, 842
TauI GCSGC 4 cut(s) 347, 379, 416, 437
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 3 cut(s) 463, 565, 572
TseI GCWGC 3 cut(s) 88, 229, 232
Tsp45I GTSAC 3 cut(s) 463, 565, 572
TspDTI ATGAA 2 cut(s) 552, 603
TspGWI ACGGA 5 cut(s) 385, 506, 611, 644, 895
TspRI CASTG 1 cut(s) 36
Tth111I GACNNNGTC 1 cut(s) 461
VpaK11BI GGWCC 3 cut(s) 452, 616, 724
XapI RAATTY 3 cut(s) 8, 52, 842
XceI RCATGY 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 1 cut(s) 809
ZraI GACGTC 2 cut(s) 772, 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.