Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8467529.1

Orthogroup ID

OG0009231

Physical Location & Seq

Genomic Coordinates Reverse (-)

238 .. 1038

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8467529.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atggcgaaattctcagagcactttatctcagtgaacaagttcgttcatgaaaattcccaaactacccatcttgaatcgcggagggtgttgcagaagcgggttcggatcatcctcaccgacccggacgccaccgactccgacagcgacgacgatgagagctccgccgtgcgcagagtgaaacgacatgtcaaggagatcaacttggagcgagcttcctcttctttcaagctgccgaagagagaacagcccgagacccgacccgatccgaagtcaccgaaatcggatccggcccggaagaagcatttcaggggagtccggcagaggccctggggtcgttgggccgcggagatccgcgacccgatccaacggaagcggctctggctcgggaccttcaacaccgccgaggaagccgccattatatacgacagagccgccgtgaagctcagaggtcctgacgccgtcaccaactttcctaacgccgttgcaacggaggagaccgttgttgctgaggaggttgtcgtcccgaccgcgcatgaggaggaaagaagcttcggctcgactgccacgtgtgactcgtcttccaatgaagaaccggcgtcatctcccacgtcagtcctccgttacgacgatcccgccccctttgaggggttccattactgcgacttccacgcttgcgggttcgagtacgacgtgccgttgctgaacctgccggacataatggtcccggcgagcaacaacttcaaccacgacgagttcggcgagtttgacgtcaacgacttcctggtcgacgtcatctcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

AP2

Protein Analysis

266

Amino Acids

30.2

Weight (kDa)

5.35

Isoelectric Point (pI)

64.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22985 AT1G71130
fragaria_vesca	FvH4_3g40810
malus_domestica	MD03G1049900.v1.1 MD09G1161000.v1.1 MD11G1052100.v1.1 MD17G1146800.v1.1
prunus_persica	Prupe.3G019900_v2.0.a1 Prupe.6G039700_v2.0.a1 Prupe.7G060700_v2.0.a1
pyrus_communis	pycom03g03950 pycom11g04250
rosa_chinensis	RchiOBHm_Chr5g0073531
rosa_laevigata	RLG00000036391
rosa_multiflora	Rmu_co8467529.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007740
rosa_rugosa	Rorug05G0424500
rosa_samantha	Rh5AG481600 Rh5BG502300 Rh5CG525500 Rh5DG514600
rosa_wichuraiana	Rw5G044740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	719, 782
AatII	GACGTC	2 cut(s)	771, 792
Acc16I	TGCGCA	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	714
AccI	GTMKAC	1 cut(s)	786
AccII	CGCG	4 cut(s)	79, 344, 354, 530
AclWI	GGATC	7 cut(s)	113, 257, 278, 291, 343, 355, 623
AcsI	RAATTY	2 cut(s)	8, 52
AcvI	CACGTG	1 cut(s)	567
AcyI	GRCGYC	5 cut(s)	126, 456, 596, 768, 789
AfaI	GTAC	1 cut(s)	686
AfiI	CCNNNNNNNGG	3 cut(s)	643, 644, 645
AflIII	ACRYGT	2 cut(s)	184, 566
AgsI	TTSAA	4 cut(s)	74, 226, 394, 742
AjiI	CACGTC	2 cut(s)	609, 691
AjnI	CCWGG	2 cut(s)	326, 780
AluBI	AGCT	5 cut(s)	159, 212, 229, 442, 549
AluI	AGCT	5 cut(s)	159, 212, 229, 442, 549
Alw21I	GWGCWC	2 cut(s)	21, 161
Alw26I	GTCTC	2 cut(s)	245, 488
AlwI	GGATC	7 cut(s)	113, 257, 278, 291, 343, 355, 623
Ama87I	CYCGRG	2 cut(s)	248, 383
AoxI	GGCC	3 cut(s)	288, 323, 339
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	2 cut(s)	8, 52
Asp700I	GAANNNNTTC	2 cut(s)	38, 302
AspLEI	GCGC	2 cut(s)	171, 532
AspS9I	GGNCC	6 cut(s)	289, 324, 339, 387, 449, 721
AsuC2I	CCSGG	3 cut(s)	122, 292, 725
AsuHPI	GGTGA	3 cut(s)	106, 264, 454
AvaI	CYCGRG	2 cut(s)	248, 383
AvaII	GGWCC	3 cut(s)	387, 449, 721
BamHI	GGATCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	161
BbrPI	CACGTG	1 cut(s)	567
BbsI	GAAGAC	1 cut(s)	570
Bbv12I	GWGCWC	2 cut(s)	21, 161
BbvCI	CCTCAGC	1 cut(s)	507
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	1 cut(s)	75
BceAI	ACGGC	5 cut(s)	149, 419, 443, 464, 679
BciT130I	CCWGG	2 cut(s)	328, 782
BcnI	CCSGG	3 cut(s)	122, 292, 725
BcoDI	GTCTC	2 cut(s)	245, 488
BfuAI	ACCTGC	1 cut(s)	714
BisI	GCNGC	5 cut(s)	230, 342, 374, 411, 432
BlsI	GCNGC	5 cut(s)	231, 343, 375, 412, 433
Bme1390I	CCNGG	5 cut(s)	122, 292, 328, 725, 782
Bme18I	GGWCC	3 cut(s)	387, 449, 721
BmeT110I	CYCGRG	2 cut(s)	248, 383
BmgBI	CACGTC	2 cut(s)	609, 691
BmgT120I	GGNCC	6 cut(s)	289, 324, 339, 387, 449, 721
BmiI	GGNNCC	4 cut(s)	285, 388, 650, 723
BmrFI	CCNGG	5 cut(s)	122, 292, 328, 725, 782
BpiI	GAAGAC	1 cut(s)	570
Bpu10I	CCTNAGC	1 cut(s)	507
BpuMI	CCSGG	3 cut(s)	122, 292, 725
BsaAI	YACGTR	1 cut(s)	567
BsaHI	GRCGYC	5 cut(s)	126, 456, 596, 768, 789
BsaI	GGTCTC	2 cut(s)	245, 488
BsaJI	CCNNGG	4 cut(s)	326, 327, 342, 402
BsaXI	ACNNNNNCTCC	1 cut(s)	779
Bsc4I	CCNNNNNNNGG	3 cut(s)	643, 644, 645
Bse118I	RCCGGY	1 cut(s)	592
BseBI	CCWGG	2 cut(s)	328, 782
BseDI	CCNNGG	4 cut(s)	326, 327, 342, 402
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	3 cut(s)	643, 644, 645
BseMII	CTCAG	4 cut(s)	27, 42, 457, 498
BseRI	GAGGAG	3 cut(s)	506, 524, 551
BseXI	GCAGC	1 cut(s)	216
Bsh1236I	CGCG	4 cut(s)	79, 344, 354, 530
Bsh1285I	CGRYCG	1 cut(s)	528
BshFI	GGCC	3 cut(s)	290, 325, 341
BsiEI	CGRYCG	1 cut(s)	528
BsiHKAI	GWGCWC	2 cut(s)	21, 161
BsiHKCI	CYCGRG	2 cut(s)	248, 383
BsiSI	CCGG	7 cut(s)	122, 287, 292, 316, 593, 710, 725
BslFI	GGGAC	3 cut(s)	400, 506, 707
BslI	CCNNNNNNNGG	3 cut(s)	643, 644, 645
BsmAI	GTCTC	2 cut(s)	245, 488
BsmFI	GGGAC	3 cut(s)	400, 506, 707
BsnI	GGCC	3 cut(s)	290, 325, 341
Bso31I	GGTCTC	2 cut(s)	245, 488
BsoBI	CYCGRG	2 cut(s)	248, 383
Bsp1286I	GDGCHC	2 cut(s)	21, 161
Bsp143I	GATC	7 cut(s)	105, 195, 262, 283, 348, 360, 628
BspANI	GGCC	3 cut(s)	290, 325, 341
BspCNI	CTCAG	4 cut(s)	26, 41, 456, 499
BspFNI	CGCG	4 cut(s)	79, 344, 354, 530
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	4 cut(s)	285, 388, 650, 723
BspMI	ACCTGC	1 cut(s)	714
BspPI	GGATC	7 cut(s)	113, 257, 278, 291, 343, 355, 623
BspTNI	GGTCTC	2 cut(s)	245, 488
BsrFI	RCCGGY	1 cut(s)	592
BssAI	RCCGGY	1 cut(s)	592
BssECI	CCNNGG	4 cut(s)	326, 327, 342, 402
BssMI	GATC	7 cut(s)	105, 195, 262, 283, 348, 360, 628
BssNI	GRCGYC	5 cut(s)	126, 456, 596, 768, 789
Bst2UI	CCWGG	2 cut(s)	328, 782
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	2 cut(s)	223, 230
BstACI	GRCGYC	5 cut(s)	126, 456, 596, 768, 789
BstBAI	YACGTR	1 cut(s)	567
BstC8I	GCNNGC	3 cut(s)	210, 673, 730
BstDEI	CTNAG	4 cut(s)	13, 28, 443, 507
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	4 cut(s)	79, 344, 354, 530
BstHHI	GCGC	2 cut(s)	171, 532
BstKTI	GATC	7 cut(s)	108, 198, 265, 286, 351, 363, 631
BstMAI	GTCTC	2 cut(s)	245, 488
BstMBI	GATC	7 cut(s)	105, 195, 262, 283, 348, 360, 628
BstMCI	CGRYCG	1 cut(s)	528
BstMWI	GCNNNNNNNGC	3 cut(s)	379, 407, 706
BstNI	CCWGG	2 cut(s)	328, 782
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	5 cut(s)	120, 290, 326, 723, 780
BstUI	CGCG	4 cut(s)	79, 344, 354, 530
BstV1I	GCAGC	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	570
BstX2I	RGATCY	2 cut(s)	283, 348
BstYI	RGATCY	2 cut(s)	283, 348
BsuRI	GGCC	3 cut(s)	290, 325, 341
BtgI	CCRYGG	1 cut(s)	342
BtrI	CACGTC	2 cut(s)	609, 691
BtsCI	GGATG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	36
BveI	ACCTGC	1 cut(s)	714
Cac8I	GCNNGC	3 cut(s)	210, 673, 730
CciI	TCATGA	1 cut(s)	46
CfoI	GCGC	2 cut(s)	171, 532
Cfr10I	RCCGGY	1 cut(s)	592
Cfr13I	GGNCC	6 cut(s)	289, 324, 339, 387, 449, 721
Cfr42I	CCGCGG	1 cut(s)	345
CseI	GACGC	3 cut(s)	134, 464, 585
Csp6I	GTAC	1 cut(s)	685
CviAII	CATG	3 cut(s)	47, 185, 533
CviQI	GTAC	1 cut(s)	685
DdeI	CTNAG	4 cut(s)	13, 28, 443, 507
DpnI	GATC	7 cut(s)	107, 197, 264, 285, 350, 362, 630
DpnII	GATC	7 cut(s)	105, 195, 262, 283, 348, 360, 628
DrdI	GACNNNNNNGTC	2 cut(s)	719, 782
DseDI	GACNNNNNNGTC	2 cut(s)	719, 782
Eam1104I	CTCTTC	2 cut(s)	223, 230
EarI	CTCTTC	2 cut(s)	223, 230
EciI	GGCGGA	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	161
Eco31I	GGTCTC	2 cut(s)	245, 488
Eco47I	GGWCC	3 cut(s)	387, 449, 721
Eco53kI	GAGCTC	1 cut(s)	159
Eco72I	CACGTG	1 cut(s)	567
Eco88I	CYCGRG	2 cut(s)	248, 383
EcoICRI	GAGCTC	1 cut(s)	159
EcoO109I	RGGNCCY	3 cut(s)	324, 387, 449
EcoRII	CCWGG	2 cut(s)	326, 780
EcoT38I	GRGCYC	1 cut(s)	161
FaeI	CATG	3 cut(s)	50, 188, 536
FaiI	YATR	6 cut(s)	48, 186, 419, 421, 534, 716
FaqI	GGGAC	3 cut(s)	400, 506, 707
FatI	CATG	3 cut(s)	46, 184, 532
FauI	CCCGC	3 cut(s)	90, 640, 668
FblI	GTMKAC	1 cut(s)	786
Fnu4HI	GCNGC	5 cut(s)	230, 342, 374, 411, 432
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	5 cut(s)	230, 342, 374, 411, 432
FspI	TGCGCA	1 cut(s)	170
GlaI	GCGC	2 cut(s)	170, 531
GluI	GCNGC	5 cut(s)	230, 342, 374, 411, 432
HaeIII	GGCC	3 cut(s)	290, 325, 341
HapII	CCGG	7 cut(s)	122, 287, 292, 316, 593, 710, 725
HgaI	GACGC	3 cut(s)	134, 464, 585
HhaI	GCGC	2 cut(s)	171, 532
Hin1I	GRCGYC	5 cut(s)	126, 456, 596, 768, 789
Hin1II	CATG	3 cut(s)	50, 188, 536
Hin6I	GCGC	2 cut(s)	169, 530
HinP1I	GCGC	2 cut(s)	169, 530
HincII	GTYRAC	2 cut(s)	772, 787
HindII	GTYRAC	2 cut(s)	772, 787
HindIII	AAGCTT	1 cut(s)	547
HinfI	GANTC	4 cut(s)	74, 134, 312, 572
HpaII	CCGG	7 cut(s)	122, 287, 292, 316, 593, 710, 725
HphI	GGTGA	3 cut(s)	106, 264, 454
Hpy166II	GTNNAC	3 cut(s)	34, 772, 787
Hpy188I	TCNGA	6 cut(s)	16, 105, 139, 267, 283, 446
Hpy188III	TCNNGA	5 cut(s)	47, 71, 385, 452, 523
Hpy8I	GTNNAC	3 cut(s)	34, 772, 787
Hpy99I	CGWCG	6 cut(s)	149, 152, 629, 692, 752, 791
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	5 cut(s)	566, 608, 690, 768, 789
HpyCH4V	TGCA	2 cut(s)	91, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	379, 407, 706
HpyF3I	CTNAG	4 cut(s)	13, 28, 443, 507
HpySE526I	ACGT	5 cut(s)	566, 608, 690, 768, 789
Hsp92I	GRCGYC	5 cut(s)	126, 456, 596, 768, 789
Hsp92II	CATG	3 cut(s)	50, 188, 536
HspAI	GCGC	2 cut(s)	169, 530
KspI	CCGCGG	1 cut(s)	345
Kzo9I	GATC	7 cut(s)	105, 195, 262, 283, 348, 360, 628
LmnI	GCTCC	2 cut(s)	164, 205
Lsp1109I	GCAGC	1 cut(s)	216
MaeII	ACGT	5 cut(s)	566, 608, 690, 768, 789
MaeIII	GTNAC	4 cut(s)	270, 460, 569, 620
MalI	GATC	7 cut(s)	107, 197, 264, 285, 350, 362, 630
MboI	GATC	7 cut(s)	105, 195, 262, 283, 348, 360, 628
MboII	GAAGA	5 cut(s)	210, 247, 307, 570, 599
MflI	RGATCY	2 cut(s)	283, 348
MhlI	GDGCHC	2 cut(s)	21, 161
MluCI	AATT	2 cut(s)	8, 52
MlyI	GAGTC	3 cut(s)	128, 321, 566
MmeI	TCCRAC	2 cut(s)	162, 388
MroXI	GAANNNNTTC	2 cut(s)	38, 302
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	7 cut(s)	122, 287, 292, 316, 593, 710, 725
MspR9I	CCNGG	5 cut(s)	122, 292, 328, 725, 782
MvaI	CCWGG	2 cut(s)	328, 782
MvnI	CGCG	4 cut(s)	79, 344, 354, 530
MwoI	GCNNNNNNNGC	3 cut(s)	379, 407, 706
NciI	CCSGG	3 cut(s)	122, 292, 725
NdeII	GATC	7 cut(s)	105, 195, 262, 283, 348, 360, 628
NlaIII	CATG	3 cut(s)	50, 188, 536
NlaIV	GGNNCC	4 cut(s)	285, 388, 650, 723
NmeAIII	GCCGAG	1 cut(s)	427
NmuCI	GTSAC	3 cut(s)	270, 460, 569
NsbI	TGCGCA	1 cut(s)	170
NspI	RCATGY	1 cut(s)	188
PagI	TCATGA	1 cut(s)	46
PasI	CCCWGGG	1 cut(s)	327
PciI	ACATGT	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	4 cut(s)	563, 572, 687, 756
PdmI	GAANNNNTTC	2 cut(s)	38, 302
PfeI	GAWTC	1 cut(s)	74
PflFI	GACNNNGTC	1 cut(s)	458
PkrI	GCNGC	5 cut(s)	231, 343, 375, 412, 433
PleI	GAGTC	3 cut(s)	128, 320, 566
PmaCI	CACGTG	1 cut(s)	567
PmlI	CACGTG	1 cut(s)	567
PpsI	GAGTC	3 cut(s)	128, 320, 566
Ppu21I	YACGTR	1 cut(s)	567
PpuMI	RGGWCCY	2 cut(s)	387, 449
PscI	ACATGT	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	161
Psp5II	RGGWCCY	2 cut(s)	387, 449
Psp6I	CCWGG	2 cut(s)	326, 780
PspCI	CACGTG	1 cut(s)	567
PspGI	CCWGG	2 cut(s)	326, 780
PspN4I	GGNNCC	4 cut(s)	285, 388, 650, 723
PspPI	GGNCC	6 cut(s)	289, 324, 339, 387, 449, 721
PspPPI	RGGWCCY	2 cut(s)	387, 449
PsuI	RGATCY	2 cut(s)	283, 348
PsyI	GACNNNGTC	1 cut(s)	458
RsaI	GTAC	1 cut(s)	686
RsaNI	GTAC	1 cut(s)	685
SacI	GAGCTC	1 cut(s)	161
SacII	CCGCGG	1 cut(s)	345
SalI	GTCGAC	1 cut(s)	785
SatI	GCNGC	5 cut(s)	230, 342, 374, 411, 432
Sau3AI	GATC	7 cut(s)	105, 195, 262, 283, 348, 360, 628
Sau96I	GGNCC	6 cut(s)	289, 324, 339, 387, 449, 721
SchI	GAGTC	3 cut(s)	128, 321, 566
ScrFI	CCNGG	5 cut(s)	122, 292, 328, 725, 782
SduI	GDGCHC	2 cut(s)	21, 161
Sfr303I	CCGCGG	1 cut(s)	345
SgrBI	CCGCGG	1 cut(s)	345
SinI	GGWCC	3 cut(s)	387, 449, 721
Sse9I	AATT	2 cut(s)	8, 52
SstI	GAGCTC	1 cut(s)	161
StyD4I	CCNGG	5 cut(s)	120, 290, 326, 723, 780
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	5 cut(s)	569, 611, 693, 771, 792
TaqI	TCGA	3 cut(s)	557, 681, 786
TasI	AATT	2 cut(s)	8, 52
TauI	GCSGC	4 cut(s)	344, 376, 413, 434
TfiI	GAWTC	1 cut(s)	74
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	3 cut(s)	270, 460, 569
TseI	GCWGC	1 cut(s)	229
Tsp45I	GTSAC	3 cut(s)	270, 460, 569
TspDTI	ATGAA	3 cut(s)	35, 63, 600
TspGWI	ACGGA	3 cut(s)	382, 503, 608
TspRI	CASTG	1 cut(s)	36
Tth111I	GACNNNGTC	1 cut(s)	458
VpaK11BI	GGWCC	3 cut(s)	387, 449, 721
XapI	RAATTY	2 cut(s)	8, 52
XceI	RCATGY	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	786
XmnI	GAANNNNTTC	2 cut(s)	38, 302
ZraI	GACGTC	2 cut(s)	769, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.