Prupe.6G039700_v2.0.a1

Pathogenesis-related genes transcriptional activator PTI6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0009231
Physical Location & Seq
Forward (+)
2981301 .. 2983333
2033 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G039700.1

Sequence Viewer

Length: 927 bp
ATGCTTCTTGATGTCTCTCAAGAACAAACCTACATCTCCAATTTCATTTCCTCTCCCTCAAAACCCATGACAAGCTTCCAAACCATCTCGTCCGTAAACCCCATGGTCAAATTTTCGGAGCAAGTAACCACCATGACCAAGCTCATCACCCACGAAAACCAAAACTCGCCTGTGAACCCGACCCATCTCCCACCAAAGCTCGTCCGGATCATACTCACAGACGCCGACGCCACCGACTCCTCCAGCGACGAAGAAGACAGCGGCGTACGCAGAGTCAAACGACATGTCAGACAGATCAGCCTCGAGCTCTCTTCACCTTCCTCCTCCTCCTCCCCTTCTTCTTCTTCTTCTTCTTCATTTTCTTCGGGTCATTCCAAACGGCTCAGAAAAGACCAACGACCCACCAAGAAACTCGGGTCGAGGTCGCCGGGATCCGACCAGACTCGGCTGAACAAGTTCCGAGGAGTCCGCCGGCGACCATGGGGCCGATGGGCCGCGGAGATCCGTGACCCGACCCGGAGAAAACGGGTCTGGCTCGGAACATTCGACACGGCGGAGGAAGCTGCCACTGTTTACGACAGAGCTGCAGTGTTGCTCAAAGGTCCTGACGCCGTCACCAACTTTCCTAACGCCGCTATGACGGAAGCCAAGGTCGTTACTGACGTGGTGGTCCCGGCGGCGGAGGAGAGCTACGGGTGCGGATCACCTACGCCCAACGAGGCTGCCACATCGCCAACTTCCGTTCTCCGGTACGACGAGTTAACGCCGTTCGACGGTTTCAGTTACGGCGAGGTGGACGCCTTTGGGTTCGACATCGACCTGCCATTAAGCCTGCCCGATATTATGTTGTCGAATAATAACAACTTTGCTCACGACGAGTTCGGCGAGTTTGACGTCAACGATTTCTGGGTTGACGTCATATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

309

Amino Acids

34.03

Weight (kDa)

5.49

Isoelectric Point (pI)

58.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 668
AatII GACGTC 2 cut(s) 897, 918
Acc36I ACCTGC 1 cut(s) 828
AccII CGCG 1 cut(s) 497
AccIII TCCGGA 1 cut(s) 204
AciI CCGC 9 cut(s) 261, 469, 495, 497, 554, 633, 677, 680, 699
AclWI GGATC 5 cut(s) 215, 426, 439, 496, 709
AcsI RAATTY 1 cut(s) 110
AcyI GRCGYC 6 cut(s) 222, 228, 609, 798, 894, 915
AfaI GTAC 2 cut(s) 267, 752
AfiI CCNNNNNNNGG 3 cut(s) 679, 747, 773
AflIII ACRYGT 1 cut(s) 283
AjiI CACGTC 1 cut(s) 664
AluBI AGCT 7 cut(s) 75, 142, 199, 307, 563, 584, 690
AluI AGCT 7 cut(s) 75, 142, 199, 307, 563, 584, 690
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 19
AlwI GGATC 5 cut(s) 215, 426, 439, 496, 709
Ama87I CYCGRG 2 cut(s) 302, 413
Aor13HI TCCGGA 1 cut(s) 204
AoxI GGCC 2 cut(s) 484, 492
ApeKI GCWGC 3 cut(s) 563, 584, 722
ApoI RAATTY 1 cut(s) 110
ArsI GACNNNNNNTTYG 2 cut(s) 270, 302
Asp700I GAANNNNTTC 1 cut(s) 455
AspS9I GGNCC 4 cut(s) 484, 492, 602, 670
AsuC2I CCSGG 3 cut(s) 429, 517, 674
AsuHPI GGTGA 4 cut(s) 139, 306, 607, 696
AvaI CYCGRG 2 cut(s) 302, 413
AvaII GGWCC 2 cut(s) 602, 670
BamHI GGATCC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 3 cut(s) 550, 571, 709
BccI CCATC 3 cut(s) 92, 192, 483
BceAI ACGGC 5 cut(s) 395, 567, 596, 751, 802
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BcnI CCSGG 3 cut(s) 429, 517, 674
BcoDI GTCTC 1 cut(s) 19
BfmI CTRYAG 1 cut(s) 585
BfuAI ACCTGC 1 cut(s) 828
BisI GCNGC 7 cut(s) 262, 495, 564, 585, 633, 678, 723
BlsI GCNGC 7 cut(s) 263, 496, 565, 586, 634, 679, 724
Bme1390I CCNGG 3 cut(s) 429, 517, 674
Bme18I GGWCC 2 cut(s) 602, 670
BmeT110I CYCGRG 2 cut(s) 302, 413
BmgBI CACGTC 1 cut(s) 664
BmgT120I GGNCC 4 cut(s) 484, 492, 602, 670
BmiI GGNNCC 3 cut(s) 433, 485, 672
BmrFI CCNGG 3 cut(s) 429, 517, 674
BpiI GAAGAC 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 226
BpuMI CCSGG 3 cut(s) 429, 517, 674
BsaHI GRCGYC 6 cut(s) 222, 228, 609, 798, 894, 915
BsaJI CCNNGG 5 cut(s) 102, 460, 479, 495, 648
BsaWI WCCGGW 2 cut(s) 204, 747
Bsc4I CCNNNNNNNGG 3 cut(s) 679, 747, 773
Bse118I RCCGGY 1 cut(s) 471
BseAI TCCGGA 1 cut(s) 204
BseDI CCNNGG 5 cut(s) 102, 460, 479, 495, 648
BseLI CCNNNNNNNGG 3 cut(s) 679, 747, 773
BseMII CTCAG 1 cut(s) 397
BseRI GAGGAG 6 cut(s) 229, 313, 316, 319, 477, 698
BseXI GCAGC 3 cut(s) 550, 571, 709
Bsh1236I CGCG 1 cut(s) 497
BshFI GGCC 2 cut(s) 486, 494
BsiHKAI GWGCWC 1 cut(s) 309
BsiHKCI CYCGRG 2 cut(s) 302, 413
BsiSI CCGG 6 cut(s) 205, 428, 472, 517, 674, 748
BsiWI CGTACG 1 cut(s) 265
BslFI GGGAC 1 cut(s) 656
BslI CCNNNNNNNGG 3 cut(s) 679, 747, 773
BsmAI GTCTC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 656
BsnI GGCC 2 cut(s) 486, 494
BsoBI CYCGRG 2 cut(s) 302, 413
Bsp1286I GDGCHC 1 cut(s) 309
Bsp13I TCCGGA 1 cut(s) 204
Bsp143I GATC 5 cut(s) 207, 294, 431, 501, 701
Bsp19I CCATGG 2 cut(s) 102, 479
BspACI CCGC 9 cut(s) 261, 469, 495, 497, 554, 633, 677, 680, 699
BspANI GGCC 2 cut(s) 486, 494
BspCNI CTCAG 1 cut(s) 396
BspEI TCCGGA 1 cut(s) 204
BspFNI CGCG 1 cut(s) 497
BspLI GGNNCC 3 cut(s) 433, 485, 672
BspMAI CTGCAG 1 cut(s) 589
BspMI ACCTGC 1 cut(s) 828
BspPI GGATC 5 cut(s) 215, 426, 439, 496, 709
BsrFI RCCGGY 1 cut(s) 471
BssAI RCCGGY 1 cut(s) 471
BssECI CCNNGG 5 cut(s) 102, 460, 479, 495, 648
BssMI GATC 5 cut(s) 207, 294, 431, 501, 701
BssNI GRCGYC 6 cut(s) 222, 228, 609, 798, 894, 915
BssT1I CCWWGG 3 cut(s) 102, 479, 648
Bst4CI ACNGT 2 cut(s) 571, 776
Bst6I CTCTTC 1 cut(s) 316
BstACI GRCGYC 6 cut(s) 222, 228, 609, 798, 894, 915
BstC8I GCNNGC 2 cut(s) 473, 833
BstDEI CTNAG 1 cut(s) 383
BstDSI CCRYGG 3 cut(s) 102, 479, 495
BstFNI CGCG 1 cut(s) 497
BstKTI GATC 5 cut(s) 210, 297, 434, 504, 704
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 5 cut(s) 207, 294, 431, 501, 701
BstMWI GCNNNNNNNGC 3 cut(s) 267, 560, 696
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 3 cut(s) 427, 515, 672
BstSFI CTRYAG 1 cut(s) 585
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 3 cut(s) 550, 571, 709
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 2 cut(s) 431, 501
BstYI RGATCY 2 cut(s) 431, 501
BsuRI GGCC 2 cut(s) 486, 494
BtgI CCRYGG 3 cut(s) 102, 479, 495
BtgZI GCGATG 1 cut(s) 714
BtrI CACGTC 1 cut(s) 664
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 2 cut(s) 567, 594
BveI ACCTGC 1 cut(s) 828
Cac8I GCNNGC 2 cut(s) 473, 833
Cfr10I RCCGGY 1 cut(s) 471
Cfr13I GGNCC 4 cut(s) 484, 492, 602, 670
Cfr42I CCGCGG 1 cut(s) 498
CseI GACGC 4 cut(s) 230, 236, 617, 806
Csp6I GTAC 2 cut(s) 266, 751
CviAII CATG 5 cut(s) 67, 103, 133, 284, 480
CviQI GTAC 2 cut(s) 266, 751
DdeI CTNAG 1 cut(s) 383
DpnI GATC 5 cut(s) 209, 296, 433, 503, 703
DpnII GATC 5 cut(s) 207, 294, 431, 501, 701
DrdI GACNNNNNNGTC 1 cut(s) 668
DseDI GACNNNNNNGTC 1 cut(s) 668
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
EciI GGCGGA 3 cut(s) 458, 569, 695
Ecl136II GAGCTC 1 cut(s) 307
Eco130I CCWWGG 3 cut(s) 102, 479, 648
Eco24I GRGCYC 1 cut(s) 309
Eco47I GGWCC 2 cut(s) 602, 670
Eco53kI GAGCTC 1 cut(s) 307
Eco88I CYCGRG 2 cut(s) 302, 413
EcoICRI GAGCTC 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 602
EcoT14I CCWWGG 3 cut(s) 102, 479, 648
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 3 cut(s) 102, 479, 648
FaeI CATG 5 cut(s) 70, 106, 136, 287, 483
FaqI GGGAC 1 cut(s) 656
FatI CATG 5 cut(s) 66, 102, 132, 283, 479
FauNDI CATATG 1 cut(s) 920
Fnu4HI GCNGC 7 cut(s) 262, 495, 564, 585, 633, 678, 723
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 7 cut(s) 262, 495, 564, 585, 633, 678, 723
GluI GCNGC 7 cut(s) 262, 495, 564, 585, 633, 678, 723
GsuI CTGGAG 1 cut(s) 226
HaeIII GGCC 2 cut(s) 486, 494
HapII CCGG 6 cut(s) 205, 428, 472, 517, 674, 748
HgaI GACGC 4 cut(s) 230, 236, 617, 806
Hin1I GRCGYC 6 cut(s) 222, 228, 609, 798, 894, 915
Hin1II CATG 5 cut(s) 70, 106, 136, 287, 483
HincII GTYRAC 3 cut(s) 762, 898, 913
HindII GTYRAC 3 cut(s) 762, 898, 913
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 4 cut(s) 236, 273, 442, 465
HpaI GTTAAC 1 cut(s) 762
HpaII CCGG 6 cut(s) 205, 428, 472, 517, 674, 748
HphI GGTGA 4 cut(s) 139, 306, 607, 696
Hpy166II GTNNAC 7 cut(s) 97, 175, 574, 762, 796, 898, 913
Hpy188I TCNGA 6 cut(s) 118, 290, 386, 436, 461, 539
Hpy188III TCNNGA 5 cut(s) 8, 20, 205, 605, 872
Hpy8I GTNNAC 7 cut(s) 97, 175, 574, 762, 796, 898, 913
Hpy99I CGWCG 5 cut(s) 230, 251, 758, 776, 878
HpyAV CCTTC 2 cut(s) 327, 345
HpyCH4III ACNGT 2 cut(s) 571, 776
HpyCH4IV ACGT 3 cut(s) 663, 894, 915
HpyCH4V TGCA 1 cut(s) 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 267, 560, 696
HpyF3I CTNAG 1 cut(s) 383
HpySE526I ACGT 3 cut(s) 663, 894, 915
Hsp92I GRCGYC 6 cut(s) 222, 228, 609, 798, 894, 915
Hsp92II CATG 5 cut(s) 70, 106, 136, 287, 483
Kpn2I TCCGGA 1 cut(s) 204
KroI GCCGGC 1 cut(s) 471
KroNI GCCGGC 1 cut(s) 473
KspAI GTTAAC 1 cut(s) 762
KspI CCGCGG 1 cut(s) 498
Kzo9I GATC 5 cut(s) 207, 294, 431, 501, 701
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 3 cut(s) 550, 571, 709
MaeII ACGT 3 cut(s) 663, 894, 915
MaeIII GTNAC 5 cut(s) 124, 506, 613, 655, 782
MalI GATC 5 cut(s) 209, 296, 433, 503, 703
MboI GATC 5 cut(s) 207, 294, 431, 501, 701
MflI RGATCY 2 cut(s) 431, 501
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 2 cut(s) 40, 110
MlyI GAGTC 4 cut(s) 230, 282, 436, 474
MmeI TCCRAC 1 cut(s) 459
MreI CGCCGGCG 1 cut(s) 471
MroI TCCGGA 1 cut(s) 204
MroNI GCCGGC 1 cut(s) 471
MroXI GAANNNNTTC 1 cut(s) 455
MseI TTAA 2 cut(s) 761, 827
MspA1I CMGCKG 2 cut(s) 261, 497
MspI CCGG 6 cut(s) 205, 428, 472, 517, 674, 748
MspR9I CCNGG 3 cut(s) 429, 517, 674
MvnI CGCG 1 cut(s) 497
MwoI GCNNNNNNNGC 3 cut(s) 267, 560, 696
NaeI GCCGGC 1 cut(s) 473
NciI CCSGG 3 cut(s) 429, 517, 674
NcoI CCATGG 2 cut(s) 102, 479
NdeI CATATG 1 cut(s) 920
NdeII GATC 5 cut(s) 207, 294, 431, 501, 701
NgoMIV GCCGGC 1 cut(s) 471
NlaIII CATG 5 cut(s) 70, 106, 136, 287, 483
NlaIV GGNNCC 3 cut(s) 433, 485, 672
NmeAIII GCCGAG 1 cut(s) 424
NmuCI GTSAC 2 cut(s) 506, 613
NspI RCATGY 1 cut(s) 287
PaeR7I CTCGAG 1 cut(s) 302
PciI ACATGT 1 cut(s) 283
PcsI WCGNNNNNNNCGW 3 cut(s) 543, 660, 882
PdiI GCCGGC 1 cut(s) 473
PdmI GAANNNNTTC 1 cut(s) 455
Pfl23II CGTACG 1 cut(s) 265
PflFI GACNNNGTC 1 cut(s) 611
PkrI GCNGC 7 cut(s) 263, 496, 565, 586, 634, 679, 724
PleI GAGTC 4 cut(s) 230, 281, 436, 473
PpsI GAGTC 4 cut(s) 230, 281, 436, 473
PpuMI RGGWCCY 1 cut(s) 602
PscI ACATGT 1 cut(s) 283
Psp124BI GAGCTC 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 602
PspLI CGTACG 1 cut(s) 265
PspN4I GGNNCC 3 cut(s) 433, 485, 672
PspPI GGNCC 4 cut(s) 484, 492, 602, 670
PspPPI RGGWCCY 1 cut(s) 602
PspXI VCTCGAGB 1 cut(s) 302
PstI CTGCAG 1 cut(s) 589
PsuI RGATCY 2 cut(s) 431, 501
PsyI GACNNNGTC 1 cut(s) 611
RsaI GTAC 2 cut(s) 267, 752
RsaNI GTAC 2 cut(s) 266, 751
SacI GAGCTC 1 cut(s) 309
SacII CCGCGG 1 cut(s) 498
SaqAI TTAA 2 cut(s) 761, 827
SatI GCNGC 7 cut(s) 262, 495, 564, 585, 633, 678, 723
Sau3AI GATC 5 cut(s) 207, 294, 431, 501, 701
Sau96I GGNCC 4 cut(s) 484, 492, 602, 670
SchI GAGTC 4 cut(s) 230, 282, 436, 474
ScrFI CCNGG 3 cut(s) 429, 517, 674
SduI GDGCHC 1 cut(s) 309
SfcI CTRYAG 1 cut(s) 585
Sfr274I CTCGAG 1 cut(s) 302
Sfr303I CCGCGG 1 cut(s) 498
SgrAI CRCCGGYG 1 cut(s) 471
SgrBI CCGCGG 1 cut(s) 498
SinI GGWCC 2 cut(s) 602, 670
SlaI CTCGAG 1 cut(s) 302
SmlI CTYRAG 2 cut(s) 18, 302
SmoI CTYRAG 2 cut(s) 18, 302
Sse9I AATT 2 cut(s) 40, 110
SsiI CCGC 9 cut(s) 261, 469, 495, 497, 554, 633, 677, 680, 699
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 3 cut(s) 427, 515, 672
StyI CCWWGG 3 cut(s) 102, 479, 648
TaaI ACNGT 2 cut(s) 571, 776
TaiI ACGT 3 cut(s) 666, 897, 918
TaqI TCGA 7 cut(s) 303, 419, 546, 771, 810, 816, 851
TasI AATT 2 cut(s) 40, 110
TauI GCSGC 4 cut(s) 264, 497, 635, 680
Tru1I TTAA 2 cut(s) 761, 827
Tru9I TTAA 2 cut(s) 761, 827
TscAI CASTG 2 cut(s) 574, 594
TseFI GTSAC 2 cut(s) 506, 613
TseI GCWGC 3 cut(s) 563, 584, 722
Tsp45I GTSAC 2 cut(s) 506, 613
TspDTI ATGAA 2 cut(s) 34, 345
TspGWI ACGGA 4 cut(s) 82, 494, 656, 730
TspRI CASTG 2 cut(s) 574, 594
Tth111I GACNNNGTC 1 cut(s) 611
VpaK11BI GGWCC 2 cut(s) 602, 670
XapI RAATTY 1 cut(s) 110
XceI RCATGY 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 486
XhoI CTCGAG 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 455
ZraI GACGTC 2 cut(s) 895, 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.