Rroxscaffold_1G00007740

Pathogenesis-related genes transcriptional activator PTI6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0009231
Physical Location & Seq
Forward (+)
9889213 .. 9890013
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00007740.1

Sequence Viewer

Length: 801 bp
ATGGAGAAATTCTCAGAGCACTTCATCTCAGTGAGCAAGTTCGTTCACGAAAATTCCCAAAATACCCATCTTGAATCGCGGAGGGTGCTGCAGAAGCGGGTTCGGATAATCCTCACCGACCCGGACGCCACCGACTCCGACAGTGACGACGATGAGAGCTCGGCCGTGCGCAGAGTGAAACGACATGTCAAGGAGATCAACTTGGAGCGAGCTACCGCTTCTTTCAAGCTGCCGAAGAGAGAACAGCCCGAGACCCGACCCGATCCGAAGTTACCGAAATCGGATCCGGCCCGGAAGAAGCATTTCAGGGGAGTCCGGCAGAGGCCGTGGGGTCGTTGGGCCGCGGAGATCCGCGACCCGATCCAACGGAAGCGGCTCTGGCTCGGGACTTTCAACACCGCAGAGGAAGCCGCCATTATATACGACAGAGCCGCCGTGAAGCTCAGAGGTCCAGACGCCGTCACCAACTTTCCTAACGCCGTTACAACGGAGGAGACCATTGTTGCTGAGGAGGCTGTCGTCCCCACCGCGCATGAAGAGGAAAGAAGCTTCGGCTCGACTGCCACGTGTGACTCGTCTCCCAATGAAGAACCGGCGTCATCTCCCACGTCGGTCCTCCGTTACGACGATCCCGCCCCCTTTGACGGGTTCCGTTACTGCGACTTCCACTCTTGCGGGTTCGAATACGACGTGCCGTTGCTGAACCTGCCGGACATAATGGTCCCGGCGAGCAACAACTTTAACCACGACGAGTTCGGCGAGTTTGACGCCAATGACTTCCTTGTCGATGTCATCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

266

Amino Acids

30.29

Weight (kDa)

5.28

Isoelectric Point (pI)

58.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 101 - 150 4.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 719, 782
Acc16I TGCGCA 1 cut(s) 170
Acc36I ACCTGC 1 cut(s) 714
AccII CGCG 4 cut(s) 79, 344, 354, 530
AclWI GGATC 6 cut(s) 257, 278, 291, 343, 355, 623
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 2 cut(s) 8, 52
AcvI CACGTG 1 cut(s) 567
AcyI GRCGYC 4 cut(s) 126, 456, 596, 768
AfiI CCNNNNNNNGG 2 cut(s) 644, 645
AflIII ACRYGT 2 cut(s) 184, 566
AgsI TTSAA 3 cut(s) 74, 226, 394
AjiI CACGTC 2 cut(s) 609, 691
AluBI AGCT 5 cut(s) 159, 212, 229, 442, 549
AluI AGCT 5 cut(s) 159, 212, 229, 442, 549
Alw21I GWGCWC 2 cut(s) 21, 161
Alw26I GTCTC 3 cut(s) 245, 488, 582
AlwI GGATC 6 cut(s) 257, 278, 291, 343, 355, 623
Ama87I CYCGRG 2 cut(s) 248, 383
AoxI GGCC 4 cut(s) 162, 288, 323, 339
ApeKI GCWGC 2 cut(s) 88, 229
ApoI RAATTY 2 cut(s) 8, 52
Asp700I GAANNNNTTC 1 cut(s) 302
AspLEI GCGC 2 cut(s) 171, 532
AspS9I GGNCC 5 cut(s) 289, 339, 449, 613, 721
AsuC2I CCSGG 3 cut(s) 122, 292, 725
AsuHPI GGTGA 2 cut(s) 106, 454
AsuII TTCGAA 1 cut(s) 681
AvaI CYCGRG 2 cut(s) 248, 383
AvaII GGWCC 3 cut(s) 449, 613, 721
BamHI GGATCC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 161
BbrPI CACGTG 1 cut(s) 567
Bbv12I GWGCWC 2 cut(s) 21, 161
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 75, 216
BccI CCATC 1 cut(s) 75
BceAI ACGGC 6 cut(s) 149, 310, 419, 443, 464, 679
BcnI CCSGG 3 cut(s) 122, 292, 725
BcoDI GTCTC 3 cut(s) 245, 488, 582
BfmI CTRYAG 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 714
BisI GCNGC 6 cut(s) 89, 230, 342, 374, 411, 432
BlsI GCNGC 6 cut(s) 90, 231, 343, 375, 412, 433
Bme1390I CCNGG 3 cut(s) 122, 292, 725
Bme18I GGWCC 3 cut(s) 449, 613, 721
BmeT110I CYCGRG 2 cut(s) 248, 383
BmgBI CACGTC 2 cut(s) 609, 691
BmgT120I GGNCC 5 cut(s) 289, 339, 449, 613, 721
BmiI GGNNCC 3 cut(s) 285, 650, 723
BmrFI CCNGG 3 cut(s) 122, 292, 725
BplI GAGNNNNNCTC 1 cut(s) 28
Bpu10I CCTNAGC 1 cut(s) 507
Bpu14I TTCGAA 1 cut(s) 681
BpuMI CCSGG 3 cut(s) 122, 292, 725
BsaAI YACGTR 1 cut(s) 567
BsaHI GRCGYC 4 cut(s) 126, 456, 596, 768
BsaI GGTCTC 2 cut(s) 245, 488
BsaJI CCNNGG 2 cut(s) 326, 342
Bsc4I CCNNNNNNNGG 2 cut(s) 644, 645
Bse118I RCCGGY 1 cut(s) 592
BseDI CCNNGG 2 cut(s) 326, 342
BseLI CCNNNNNNNGG 2 cut(s) 644, 645
BseMII CTCAG 4 cut(s) 27, 42, 457, 498
BseRI GAGGAG 2 cut(s) 506, 524
BseX3I CGGCCG 1 cut(s) 162
BseXI GCAGC 2 cut(s) 75, 216
Bsh1236I CGCG 4 cut(s) 79, 344, 354, 530
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 4 cut(s) 164, 290, 325, 341
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 2 cut(s) 21, 161
BsiHKCI CYCGRG 2 cut(s) 248, 383
BsiSI CCGG 7 cut(s) 122, 287, 292, 316, 593, 710, 725
BslFI GGGAC 3 cut(s) 400, 506, 707
BslI CCNNNNNNNGG 2 cut(s) 644, 645
BsmAI GTCTC 3 cut(s) 245, 488, 582
BsmBI CGTCTC 1 cut(s) 582
BsmFI GGGAC 3 cut(s) 400, 506, 707
BsnI GGCC 4 cut(s) 164, 290, 325, 341
Bso31I GGTCTC 2 cut(s) 245, 488
BsoBI CYCGRG 2 cut(s) 248, 383
Bsp119I TTCGAA 1 cut(s) 681
Bsp1286I GDGCHC 2 cut(s) 21, 161
Bsp143I GATC 6 cut(s) 195, 262, 283, 348, 360, 628
BspANI GGCC 4 cut(s) 164, 290, 325, 341
BspCNI CTCAG 4 cut(s) 26, 41, 456, 499
BspFNI CGCG 4 cut(s) 79, 344, 354, 530
BspLI GGNNCC 3 cut(s) 285, 650, 723
BspMAI CTGCAG 1 cut(s) 93
BspMI ACCTGC 1 cut(s) 714
BspPI GGATC 6 cut(s) 257, 278, 291, 343, 355, 623
BspT104I TTCGAA 1 cut(s) 681
BspTNI GGTCTC 2 cut(s) 245, 488
BsrFI RCCGGY 1 cut(s) 592
BssAI RCCGGY 1 cut(s) 592
BssECI CCNNGG 2 cut(s) 326, 342
BssMI GATC 6 cut(s) 195, 262, 283, 348, 360, 628
BssNI GRCGYC 4 cut(s) 126, 456, 596, 768
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 2 cut(s) 230, 531
BstACI GRCGYC 4 cut(s) 126, 456, 596, 768
BstBAI YACGTR 1 cut(s) 567
BstBI TTCGAA 1 cut(s) 681
BstC8I GCNNGC 2 cut(s) 210, 730
BstDEI CTNAG 4 cut(s) 13, 28, 443, 507
BstDSI CCRYGG 2 cut(s) 326, 342
BstFNI CGCG 4 cut(s) 79, 344, 354, 530
BstHHI GCGC 2 cut(s) 171, 532
BstKTI GATC 6 cut(s) 198, 265, 286, 351, 363, 631
BstMAI GTCTC 3 cut(s) 245, 488, 582
BstMBI GATC 6 cut(s) 195, 262, 283, 348, 360, 628
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 6 cut(s) 85, 94, 379, 407, 512, 706
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 3 cut(s) 120, 290, 723
BstSFI CTRYAG 1 cut(s) 89
BstUI CGCG 4 cut(s) 79, 344, 354, 530
BstV1I GCAGC 2 cut(s) 75, 216
BstX2I RGATCY 2 cut(s) 283, 348
BstYI RGATCY 2 cut(s) 283, 348
BstZI CGGCCG 1 cut(s) 162
BsuRI GGCC 4 cut(s) 164, 290, 325, 341
BtgI CCRYGG 2 cut(s) 326, 342
BtrI CACGTC 2 cut(s) 609, 691
BtsIMutI CAGTG 2 cut(s) 36, 148
BveI ACCTGC 1 cut(s) 714
Cac8I GCNNGC 2 cut(s) 210, 730
CfoI GCGC 2 cut(s) 171, 532
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 5 cut(s) 289, 339, 449, 613, 721
Cfr42I CCGCGG 1 cut(s) 345
CseI GACGC 4 cut(s) 134, 464, 585, 776
CviAII CATG 2 cut(s) 185, 533
DdeI CTNAG 4 cut(s) 13, 28, 443, 507
DpnI GATC 6 cut(s) 197, 264, 285, 350, 362, 630
DpnII GATC 6 cut(s) 195, 262, 283, 348, 360, 628
DrdI GACNNNNNNGTC 2 cut(s) 719, 782
DseDI GACNNNNNNGTC 2 cut(s) 719, 782
EaeI YGGCCR 1 cut(s) 162
EagI CGGCCG 1 cut(s) 162
Eam1104I CTCTTC 2 cut(s) 230, 531
EarI CTCTTC 2 cut(s) 230, 531
Ecl136II GAGCTC 1 cut(s) 159
EclXI CGGCCG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 161
Eco31I GGTCTC 2 cut(s) 245, 488
Eco47I GGWCC 3 cut(s) 449, 613, 721
Eco52I CGGCCG 1 cut(s) 162
Eco53kI GAGCTC 1 cut(s) 159
Eco72I CACGTG 1 cut(s) 567
Eco88I CYCGRG 2 cut(s) 248, 383
EcoICRI GAGCTC 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 582
FaeI CATG 2 cut(s) 188, 536
FaiI YATR 5 cut(s) 186, 419, 421, 534, 716
FaqI GGGAC 3 cut(s) 400, 506, 707
FatI CATG 2 cut(s) 184, 532
FauI CCCGC 3 cut(s) 90, 640, 668
Fnu4HI GCNGC 6 cut(s) 89, 230, 342, 374, 411, 432
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 6 cut(s) 89, 230, 342, 374, 411, 432
FspI TGCGCA 1 cut(s) 170
GlaI GCGC 2 cut(s) 170, 531
GluI GCNGC 6 cut(s) 89, 230, 342, 374, 411, 432
HaeIII GGCC 4 cut(s) 164, 290, 325, 341
HapII CCGG 7 cut(s) 122, 287, 292, 316, 593, 710, 725
HgaI GACGC 4 cut(s) 134, 464, 585, 776
HhaI GCGC 2 cut(s) 171, 532
Hin1I GRCGYC 4 cut(s) 126, 456, 596, 768
Hin1II CATG 2 cut(s) 188, 536
Hin6I GCGC 2 cut(s) 169, 530
HinP1I GCGC 2 cut(s) 169, 530
HindIII AAGCTT 1 cut(s) 547
HinfI GANTC 4 cut(s) 74, 134, 312, 572
HpaII CCGG 7 cut(s) 122, 287, 292, 316, 593, 710, 725
HphI GGTGA 2 cut(s) 106, 454
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 6 cut(s) 16, 105, 139, 267, 283, 446
Hpy188III TCNNGA 4 cut(s) 47, 71, 385, 452
Hpy8I GTNNAC 1 cut(s) 46
Hpy99I CGWCG 5 cut(s) 152, 613, 629, 692, 752
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 3 cut(s) 566, 608, 690
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 6 cut(s) 85, 94, 379, 407, 512, 706
HpyF3I CTNAG 4 cut(s) 13, 28, 443, 507
HpySE526I ACGT 3 cut(s) 566, 608, 690
Hsp92I GRCGYC 4 cut(s) 126, 456, 596, 768
Hsp92II CATG 2 cut(s) 188, 536
HspAI GCGC 2 cut(s) 169, 530
KspI CCGCGG 1 cut(s) 345
Kzo9I GATC 6 cut(s) 195, 262, 283, 348, 360, 628
LmnI GCTCC 1 cut(s) 205
Lsp1109I GCAGC 2 cut(s) 75, 216
MaeII ACGT 3 cut(s) 566, 608, 690
MaeIII GTNAC 7 cut(s) 143, 270, 460, 481, 569, 620, 653
MalI GATC 6 cut(s) 197, 264, 285, 350, 362, 630
MboI GATC 6 cut(s) 195, 262, 283, 348, 360, 628
MboII GAAGA 4 cut(s) 247, 307, 548, 599
MflI RGATCY 2 cut(s) 283, 348
MhlI GDGCHC 2 cut(s) 21, 161
MluCI AATT 2 cut(s) 8, 52
MlyI GAGTC 3 cut(s) 128, 321, 566
MmeI TCCRAC 2 cut(s) 162, 388
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 1 cut(s) 741
MslI CAYNNNNRTG 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 7 cut(s) 122, 287, 292, 316, 593, 710, 725
MspR9I CCNGG 3 cut(s) 122, 292, 725
MvnI CGCG 4 cut(s) 79, 344, 354, 530
MwoI GCNNNNNNNGC 6 cut(s) 85, 94, 379, 407, 512, 706
NciI CCSGG 3 cut(s) 122, 292, 725
NdeII GATC 6 cut(s) 195, 262, 283, 348, 360, 628
NlaIII CATG 2 cut(s) 188, 536
NlaIV GGNNCC 3 cut(s) 285, 650, 723
NmeAIII GCCGAG 1 cut(s) 140
NmuCI GTSAC 3 cut(s) 143, 460, 569
NsbI TGCGCA 1 cut(s) 170
NspI RCATGY 1 cut(s) 188
NspV TTCGAA 1 cut(s) 681
PciI ACATGT 1 cut(s) 184
PcsI WCGNNNNNNNCGW 4 cut(s) 563, 572, 687, 756
PdmI GAANNNNTTC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 74
PflFI GACNNNGTC 1 cut(s) 458
PkrI GCNGC 6 cut(s) 90, 231, 343, 375, 412, 433
PleI GAGTC 3 cut(s) 128, 320, 566
PmaCI CACGTG 1 cut(s) 567
PmlI CACGTG 1 cut(s) 567
PpsI GAGTC 3 cut(s) 128, 320, 566
Ppu21I YACGTR 1 cut(s) 567
PscI ACATGT 1 cut(s) 184
Psp124BI GAGCTC 1 cut(s) 161
PspCI CACGTG 1 cut(s) 567
PspN4I GGNNCC 3 cut(s) 285, 650, 723
PspPI GGNCC 5 cut(s) 289, 339, 449, 613, 721
PstI CTGCAG 1 cut(s) 93
PsuI RGATCY 2 cut(s) 283, 348
PsyI GACNNNGTC 1 cut(s) 458
RseI CAYNNNNRTG 1 cut(s) 29
SacI GAGCTC 1 cut(s) 161
SacII CCGCGG 1 cut(s) 345
SaqAI TTAA 1 cut(s) 741
SatI GCNGC 6 cut(s) 89, 230, 342, 374, 411, 432
Sau3AI GATC 6 cut(s) 195, 262, 283, 348, 360, 628
Sau96I GGNCC 5 cut(s) 289, 339, 449, 613, 721
SchI GAGTC 3 cut(s) 128, 321, 566
ScrFI CCNGG 3 cut(s) 122, 292, 725
SduI GDGCHC 2 cut(s) 21, 161
SfcI CTRYAG 1 cut(s) 89
Sfr303I CCGCGG 1 cut(s) 345
SfuI TTCGAA 1 cut(s) 681
SgrBI CCGCGG 1 cut(s) 345
SinI GGWCC 3 cut(s) 449, 613, 721
SmiMI CAYNNNNRTG 1 cut(s) 29
Sse9I AATT 2 cut(s) 8, 52
SstI GAGCTC 1 cut(s) 161
StyD4I CCNGG 3 cut(s) 120, 290, 723
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 3 cut(s) 569, 611, 693
TaqI TCGA 3 cut(s) 557, 681, 786
TaqII GACCGA 1 cut(s) 601
TasI AATT 2 cut(s) 8, 52
TauI GCSGC 4 cut(s) 344, 376, 413, 434
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TscAI CASTG 2 cut(s) 36, 148
TseFI GTSAC 3 cut(s) 143, 460, 569
TseI GCWGC 2 cut(s) 88, 229
Tsp45I GTSAC 3 cut(s) 143, 460, 569
TspDTI ATGAA 3 cut(s) 13, 549, 600
TspGWI ACGGA 4 cut(s) 382, 503, 608, 641
TspRI CASTG 2 cut(s) 36, 148
Tth111I GACNNNGTC 1 cut(s) 458
VpaK11BI GGWCC 3 cut(s) 449, 613, 721
XapI RAATTY 2 cut(s) 8, 52
XceI RCATGY 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.