RchiOBHm_Chr5g0073531

Pathogenesis-related genes transcriptional activator PTI6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0009231
Physical Location & Seq
Reverse (-)
79543690 .. 79545231
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34841

Sequence Viewer

Length: 801 bp
ATGGCGAAATTCTCAGAGCACTTTATCTCAGTGAGCAAGTTCGTTCACGAAAATTCCCAAACTACCCATCTTGAATCGCGGAGGGTGCTGCAGAAGCGGGTTCGGATTATCCTCACCGACCCGGACGCCACAGACTCCGACAGCGACGACGATGAGAGCTCCGCCGTGCGCAGAGTGAAACGACATGTCAAGGAGATCAACTTGGAGCGAGCTTCCTCTTCTTTCAAGCTGCCGAAGAGAGAACAGCCCGAGACCCGACCCGATCCGAAGTCACCGAAATCGGATCCGGCCCGGAAGAAGCATTTCAGGGGAGTCCGGCAGAGGCCTTGGGGTCGTTGGGCCGCGGAGATCCGCGACCCGATCCAACGGAAGCGGCTCTGGCTCGGGACCTTCAACACCGCCGAGGAAGCCGCCATTATATACGACAGAGCCGCCGTGAAGCTCAGAGGTCCTGACGCCGTCACCAACTTTCCTAACGCCGTTGCAACGGAGGAGACCGTTGTTGCTGAGGAGGTTGTCGTCCCCACCGCGCATGAGGAGGAAAGAAGCTTCGGCTCGACTGCCACGTGTGACTCGTCTTCCAATGTAGAACCGGCGTCATCTCCCACGTCGGTCCTCCGTTACGACGATCCCGCCCCCTTTGACGGGTTCCATTACTGCGACTTCCACGCTTGCGGGTTCGAATACGACGTGCCGTTGCTGAACCTGCCGGACATAATGATCCCGGCGAGCAACAACTTCAACCACGACGAGTTCGGCGAGTTTGACGTCAACGACTTCCTGGTCGACGTCATCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

266

Amino Acids

30.14

Weight (kDa)

5.43

Isoelectric Point (pI)

61.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 101 - 150 4.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 782
AatII GACGTC 2 cut(s) 771, 792
Acc16I TGCGCA 1 cut(s) 170
Acc36I ACCTGC 1 cut(s) 714
AccI GTMKAC 1 cut(s) 786
AccII CGCG 4 cut(s) 79, 344, 354, 530
AclWI GGATC 7 cut(s) 257, 278, 291, 343, 355, 623, 715
AcsI RAATTY 2 cut(s) 8, 52
AcvI CACGTG 1 cut(s) 567
AcyI GRCGYC 5 cut(s) 126, 456, 596, 768, 789
AfiI CCNNNNNNNGG 2 cut(s) 644, 645
AflIII ACRYGT 2 cut(s) 184, 566
AgsI TTSAA 4 cut(s) 74, 226, 394, 742
AjiI CACGTC 2 cut(s) 609, 691
AjnI CCWGG 1 cut(s) 780
AluBI AGCT 5 cut(s) 159, 212, 229, 442, 549
AluI AGCT 5 cut(s) 159, 212, 229, 442, 549
Alw21I GWGCWC 2 cut(s) 21, 161
Alw26I GTCTC 2 cut(s) 245, 488
AlwI GGATC 7 cut(s) 257, 278, 291, 343, 355, 623, 715
Ama87I CYCGRG 2 cut(s) 248, 383
AoxI GGCC 3 cut(s) 288, 323, 339
ApeKI GCWGC 2 cut(s) 88, 229
ApoI RAATTY 2 cut(s) 8, 52
Asp700I GAANNNNTTC 1 cut(s) 302
AspLEI GCGC 2 cut(s) 171, 532
AspS9I GGNCC 5 cut(s) 289, 339, 387, 449, 613
AsuC2I CCSGG 3 cut(s) 122, 292, 725
AsuHPI GGTGA 3 cut(s) 106, 264, 454
AsuII TTCGAA 1 cut(s) 681
AvaI CYCGRG 2 cut(s) 248, 383
AvaII GGWCC 3 cut(s) 387, 449, 613
BamHI GGATCC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 161
BbrPI CACGTG 1 cut(s) 567
BbsI GAAGAC 1 cut(s) 570
Bbv12I GWGCWC 2 cut(s) 21, 161
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 75, 216
BccI CCATC 1 cut(s) 75
BceAI ACGGC 5 cut(s) 149, 419, 443, 464, 679
BciT130I CCWGG 1 cut(s) 782
BcnI CCSGG 3 cut(s) 122, 292, 725
BcoDI GTCTC 2 cut(s) 245, 488
BfmI CTRYAG 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 714
BisI GCNGC 6 cut(s) 89, 230, 342, 374, 411, 432
BlsI GCNGC 6 cut(s) 90, 231, 343, 375, 412, 433
Bme1390I CCNGG 4 cut(s) 122, 292, 725, 782
Bme18I GGWCC 3 cut(s) 387, 449, 613
BmeT110I CYCGRG 2 cut(s) 248, 383
BmgBI CACGTC 2 cut(s) 609, 691
BmgT120I GGNCC 5 cut(s) 289, 339, 387, 449, 613
BmiI GGNNCC 3 cut(s) 285, 388, 650
BmrFI CCNGG 4 cut(s) 122, 292, 725, 782
BpiI GAAGAC 1 cut(s) 570
Bpu10I CCTNAGC 1 cut(s) 507
Bpu14I TTCGAA 1 cut(s) 681
BpuMI CCSGG 3 cut(s) 122, 292, 725
BsaAI YACGTR 1 cut(s) 567
BsaHI GRCGYC 5 cut(s) 126, 456, 596, 768, 789
BsaI GGTCTC 2 cut(s) 245, 488
BsaJI CCNNGG 3 cut(s) 326, 342, 402
BsaXI ACNNNNNCTCC 1 cut(s) 779
Bsc4I CCNNNNNNNGG 2 cut(s) 644, 645
Bse118I RCCGGY 1 cut(s) 592
BseBI CCWGG 1 cut(s) 782
BseDI CCNNGG 3 cut(s) 326, 342, 402
BseLI CCNNNNNNNGG 2 cut(s) 644, 645
BseMII CTCAG 4 cut(s) 27, 42, 457, 498
BseRI GAGGAG 3 cut(s) 506, 524, 551
BseXI GCAGC 2 cut(s) 75, 216
Bsh1236I CGCG 4 cut(s) 79, 344, 354, 530
BshFI GGCC 3 cut(s) 290, 325, 341
BsiHKAI GWGCWC 2 cut(s) 21, 161
BsiHKCI CYCGRG 2 cut(s) 248, 383
BsiSI CCGG 7 cut(s) 122, 287, 292, 316, 593, 710, 725
BslFI GGGAC 2 cut(s) 400, 506
BslI CCNNNNNNNGG 2 cut(s) 644, 645
BsmAI GTCTC 2 cut(s) 245, 488
BsmFI GGGAC 2 cut(s) 400, 506
BsnI GGCC 3 cut(s) 290, 325, 341
Bso31I GGTCTC 2 cut(s) 245, 488
BsoBI CYCGRG 2 cut(s) 248, 383
Bsp119I TTCGAA 1 cut(s) 681
Bsp1286I GDGCHC 2 cut(s) 21, 161
Bsp143I GATC 7 cut(s) 195, 262, 283, 348, 360, 628, 720
BspANI GGCC 3 cut(s) 290, 325, 341
BspCNI CTCAG 4 cut(s) 26, 41, 456, 499
BspFNI CGCG 4 cut(s) 79, 344, 354, 530
BspLI GGNNCC 3 cut(s) 285, 388, 650
BspMAI CTGCAG 1 cut(s) 93
BspMI ACCTGC 1 cut(s) 714
BspPI GGATC 7 cut(s) 257, 278, 291, 343, 355, 623, 715
BspT104I TTCGAA 1 cut(s) 681
BspTNI GGTCTC 2 cut(s) 245, 488
BsrFI RCCGGY 1 cut(s) 592
BssAI RCCGGY 1 cut(s) 592
BssECI CCNNGG 3 cut(s) 326, 342, 402
BssMI GATC 7 cut(s) 195, 262, 283, 348, 360, 628, 720
BssNI GRCGYC 5 cut(s) 126, 456, 596, 768, 789
BssT1I CCWWGG 1 cut(s) 326
Bst2UI CCWGG 1 cut(s) 782
Bst4CI ACNGT 1 cut(s) 499
Bst6I CTCTTC 2 cut(s) 223, 230
BstACI GRCGYC 5 cut(s) 126, 456, 596, 768, 789
BstBAI YACGTR 1 cut(s) 567
BstBI TTCGAA 1 cut(s) 681
BstC8I GCNNGC 3 cut(s) 210, 673, 730
BstDEI CTNAG 4 cut(s) 13, 28, 443, 507
BstDSI CCRYGG 1 cut(s) 342
BstFNI CGCG 4 cut(s) 79, 344, 354, 530
BstHHI GCGC 2 cut(s) 171, 532
BstKTI GATC 7 cut(s) 198, 265, 286, 351, 363, 631, 723
BstMAI GTCTC 2 cut(s) 245, 488
BstMBI GATC 7 cut(s) 195, 262, 283, 348, 360, 628, 720
BstMWI GCNNNNNNNGC 5 cut(s) 85, 94, 379, 407, 706
BstNI CCWGG 1 cut(s) 782
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 4 cut(s) 120, 290, 723, 780
BstSFI CTRYAG 1 cut(s) 89
BstUI CGCG 4 cut(s) 79, 344, 354, 530
BstV1I GCAGC 2 cut(s) 75, 216
BstV2I GAAGAC 1 cut(s) 570
BstX2I RGATCY 2 cut(s) 283, 348
BstYI RGATCY 2 cut(s) 283, 348
BsuRI GGCC 3 cut(s) 290, 325, 341
BtgI CCRYGG 1 cut(s) 342
BtrI CACGTC 2 cut(s) 609, 691
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 714
Cac8I GCNNGC 3 cut(s) 210, 673, 730
CfoI GCGC 2 cut(s) 171, 532
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 5 cut(s) 289, 339, 387, 449, 613
Cfr42I CCGCGG 1 cut(s) 345
CseI GACGC 3 cut(s) 134, 464, 585
CviAII CATG 2 cut(s) 185, 533
DdeI CTNAG 4 cut(s) 13, 28, 443, 507
DpnI GATC 7 cut(s) 197, 264, 285, 350, 362, 630, 722
DpnII GATC 7 cut(s) 195, 262, 283, 348, 360, 628, 720
DrdI GACNNNNNNGTC 1 cut(s) 782
DseDI GACNNNNNNGTC 1 cut(s) 782
Eam1104I CTCTTC 2 cut(s) 223, 230
EarI CTCTTC 2 cut(s) 223, 230
EciI GGCGGA 1 cut(s) 151
Ecl136II GAGCTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 326
Eco147I AGGCCT 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 161
Eco31I GGTCTC 2 cut(s) 245, 488
Eco47I GGWCC 3 cut(s) 387, 449, 613
Eco53kI GAGCTC 1 cut(s) 159
Eco72I CACGTG 1 cut(s) 567
Eco88I CYCGRG 2 cut(s) 248, 383
EcoICRI GAGCTC 1 cut(s) 159
EcoO109I RGGNCCY 2 cut(s) 387, 449
EcoRII CCWGG 1 cut(s) 780
EcoT14I CCWWGG 1 cut(s) 326
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 2 cut(s) 188, 536
FaiI YATR 5 cut(s) 186, 419, 421, 534, 716
FaqI GGGAC 2 cut(s) 400, 506
FatI CATG 2 cut(s) 184, 532
FauI CCCGC 3 cut(s) 90, 640, 668
FblI GTMKAC 1 cut(s) 786
Fnu4HI GCNGC 6 cut(s) 89, 230, 342, 374, 411, 432
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 6 cut(s) 89, 230, 342, 374, 411, 432
FspI TGCGCA 1 cut(s) 170
GlaI GCGC 2 cut(s) 170, 531
GluI GCNGC 6 cut(s) 89, 230, 342, 374, 411, 432
HaeIII GGCC 3 cut(s) 290, 325, 341
HapII CCGG 7 cut(s) 122, 287, 292, 316, 593, 710, 725
HgaI GACGC 3 cut(s) 134, 464, 585
HhaI GCGC 2 cut(s) 171, 532
Hin1I GRCGYC 5 cut(s) 126, 456, 596, 768, 789
Hin1II CATG 2 cut(s) 188, 536
Hin6I GCGC 2 cut(s) 169, 530
HinP1I GCGC 2 cut(s) 169, 530
HincII GTYRAC 2 cut(s) 772, 787
HindII GTYRAC 2 cut(s) 772, 787
HindIII AAGCTT 1 cut(s) 547
HinfI GANTC 4 cut(s) 74, 134, 312, 572
HpaII CCGG 7 cut(s) 122, 287, 292, 316, 593, 710, 725
HphI GGTGA 3 cut(s) 106, 264, 454
Hpy166II GTNNAC 3 cut(s) 46, 772, 787
Hpy188I TCNGA 6 cut(s) 16, 105, 139, 267, 283, 446
Hpy188III TCNNGA 4 cut(s) 47, 71, 385, 452
Hpy8I GTNNAC 3 cut(s) 46, 772, 787
Hpy99I CGWCG 7 cut(s) 149, 152, 613, 629, 692, 752, 791
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 1 cut(s) 499
HpyCH4IV ACGT 5 cut(s) 566, 608, 690, 768, 789
HpyCH4V TGCA 2 cut(s) 91, 485
HpyF10VI GCNNNNNNNGC 5 cut(s) 85, 94, 379, 407, 706
HpyF3I CTNAG 4 cut(s) 13, 28, 443, 507
HpySE526I ACGT 5 cut(s) 566, 608, 690, 768, 789
Hsp92I GRCGYC 5 cut(s) 126, 456, 596, 768, 789
Hsp92II CATG 2 cut(s) 188, 536
HspAI GCGC 2 cut(s) 169, 530
KspI CCGCGG 1 cut(s) 345
Kzo9I GATC 7 cut(s) 195, 262, 283, 348, 360, 628, 720
LmnI GCTCC 2 cut(s) 164, 205
Lsp1109I GCAGC 2 cut(s) 75, 216
MaeII ACGT 5 cut(s) 566, 608, 690, 768, 789
MaeIII GTNAC 4 cut(s) 270, 460, 569, 620
MalI GATC 7 cut(s) 197, 264, 285, 350, 362, 630, 722
MboI GATC 7 cut(s) 195, 262, 283, 348, 360, 628, 720
MboII GAAGA 4 cut(s) 210, 247, 307, 570
MflI RGATCY 2 cut(s) 283, 348
MhlI GDGCHC 2 cut(s) 21, 161
MluCI AATT 2 cut(s) 8, 52
MlyI GAGTC 3 cut(s) 128, 321, 566
MmeI TCCRAC 2 cut(s) 162, 388
MroXI GAANNNNTTC 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 7 cut(s) 122, 287, 292, 316, 593, 710, 725
MspR9I CCNGG 4 cut(s) 122, 292, 725, 782
MvaI CCWGG 1 cut(s) 782
MvnI CGCG 4 cut(s) 79, 344, 354, 530
MwoI GCNNNNNNNGC 5 cut(s) 85, 94, 379, 407, 706
NciI CCSGG 3 cut(s) 122, 292, 725
NdeII GATC 7 cut(s) 195, 262, 283, 348, 360, 628, 720
NlaIII CATG 2 cut(s) 188, 536
NlaIV GGNNCC 3 cut(s) 285, 388, 650
NmeAIII GCCGAG 1 cut(s) 427
NmuCI GTSAC 3 cut(s) 270, 460, 569
NsbI TGCGCA 1 cut(s) 170
NspI RCATGY 1 cut(s) 188
NspV TTCGAA 1 cut(s) 681
PceI AGGCCT 1 cut(s) 325
PciI ACATGT 1 cut(s) 184
PcsI WCGNNNNNNNCGW 4 cut(s) 563, 572, 687, 756
PdmI GAANNNNTTC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 74
PflFI GACNNNGTC 1 cut(s) 458
PkrI GCNGC 6 cut(s) 90, 231, 343, 375, 412, 433
PleI GAGTC 3 cut(s) 128, 320, 566
PmaCI CACGTG 1 cut(s) 567
PmlI CACGTG 1 cut(s) 567
PpsI GAGTC 3 cut(s) 128, 320, 566
Ppu21I YACGTR 1 cut(s) 567
PpuMI RGGWCCY 2 cut(s) 387, 449
PscI ACATGT 1 cut(s) 184
Psp124BI GAGCTC 1 cut(s) 161
Psp5II RGGWCCY 2 cut(s) 387, 449
Psp6I CCWGG 1 cut(s) 780
PspCI CACGTG 1 cut(s) 567
PspGI CCWGG 1 cut(s) 780
PspN4I GGNNCC 3 cut(s) 285, 388, 650
PspPI GGNCC 5 cut(s) 289, 339, 387, 449, 613
PspPPI RGGWCCY 2 cut(s) 387, 449
PstI CTGCAG 1 cut(s) 93
PsuI RGATCY 2 cut(s) 283, 348
PsyI GACNNNGTC 1 cut(s) 458
SacI GAGCTC 1 cut(s) 161
SacII CCGCGG 1 cut(s) 345
SalI GTCGAC 1 cut(s) 785
SatI GCNGC 6 cut(s) 89, 230, 342, 374, 411, 432
Sau3AI GATC 7 cut(s) 195, 262, 283, 348, 360, 628, 720
Sau96I GGNCC 5 cut(s) 289, 339, 387, 449, 613
SchI GAGTC 3 cut(s) 128, 321, 566
ScrFI CCNGG 4 cut(s) 122, 292, 725, 782
SduI GDGCHC 2 cut(s) 21, 161
SfcI CTRYAG 1 cut(s) 89
Sfr303I CCGCGG 1 cut(s) 345
SfuI TTCGAA 1 cut(s) 681
SgrBI CCGCGG 1 cut(s) 345
SinI GGWCC 3 cut(s) 387, 449, 613
Sse9I AATT 2 cut(s) 8, 52
SseBI AGGCCT 1 cut(s) 325
SstI GAGCTC 1 cut(s) 161
StuI AGGCCT 1 cut(s) 325
StyD4I CCNGG 4 cut(s) 120, 290, 723, 780
StyI CCWWGG 1 cut(s) 326
TaaI ACNGT 1 cut(s) 499
TaiI ACGT 5 cut(s) 569, 611, 693, 771, 792
TaqI TCGA 3 cut(s) 557, 681, 786
TaqII GACCGA 1 cut(s) 601
TasI AATT 2 cut(s) 8, 52
TauI GCSGC 4 cut(s) 344, 376, 413, 434
TfiI GAWTC 1 cut(s) 74
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 3 cut(s) 270, 460, 569
TseI GCWGC 2 cut(s) 88, 229
Tsp45I GTSAC 3 cut(s) 270, 460, 569
TspGWI ACGGA 3 cut(s) 382, 503, 608
TspRI CASTG 1 cut(s) 36
Tth111I GACNNNGTC 1 cut(s) 458
VpaK11BI GGWCC 3 cut(s) 387, 449, 613
XapI RAATTY 2 cut(s) 8, 52
XceI RCATGY 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 786
XmnI GAANNNNTTC 1 cut(s) 302
ZraI GACGTC 2 cut(s) 769, 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.