Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009231

Physical Location & Seq

Genomic Coordinates Forward (+)

1462733 .. 1463844

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G019900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGACCACCACCACCACCATCCTCACCAAACCCAAGATGATCCATCAAAACCAAAACCTACCACCAAACCCGACCCGGCTCCCACCAAAGCGGCTTGTTCGGATCATTCTCGCAGACGCCGACGCCACCGACTCCTCCAGCGACGAAGACAGTGTTGTACCCGGAGTCAAACGGCATGTCAGAAAGATCAGCCGTGAGCTCTCCTCGCCTTCGAATTGTTCCTGTCATTCTAAGCTGTCCAAGCGACGCAACCAGCCGGAACCCGACCCGACCAGCCGGGAAAAGTTCATAGGCGTCCGGAAGCGGCCTTGGGGCCGATATGCCGCAGAGATTCGGGACCCGACTCAGAGAAAACGGGTCTGGTTGGGAACCTACGACACTGCCGAGGAAGCTGCCGCTGTCTACGACAGAGCAGCGCTGAAGCTGAAGGGTCCTCACGCCGTCACTAACTTTACCATCCCCGTTATAGCGGAGGAGACGGTTGCTGATGAGGTGGTCCCCGCTGTGGGTTCGAGCCATGTGAGTGAGGTTGGGGGAGAGGGAGGAGCTGCTGGTTGTGTTTCGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

AP2

Protein Analysis

190

Amino Acids

20.61

Weight (kDa)

9.37

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22985 AT1G71130
fragaria_vesca	FvH4_3g40810
malus_domestica	MD03G1049900.v1.1 MD09G1161000.v1.1 MD11G1052100.v1.1 MD17G1146800.v1.1
prunus_persica	Prupe.3G019900_v2.0.a1 Prupe.6G039700_v2.0.a1 Prupe.7G060700_v2.0.a1
pyrus_communis	pycom03g03950 pycom11g04250
rosa_chinensis	RchiOBHm_Chr5g0073531
rosa_laevigata	RLG00000036391
rosa_multiflora	Rmu_co8467529.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007740
rosa_rugosa	Rorug05G0424500
rosa_samantha	Rh5AG481600 Rh5BG502300 Rh5CG525500 Rh5DG514600
rosa_wichuraiana	Rw5G044740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	402
AccIII	TCCGGA	1 cut(s)	297
AciI	CCGC	6 cut(s)	91, 304, 324, 396, 470, 501
AclWI	GGATC	2 cut(s)	34, 110
AcuI	CTGAAG	2 cut(s)	440, 446
AcyI	GRCGYC	3 cut(s)	117, 123, 294
AfaI	GTAC	1 cut(s)	159
AfeI	AGCGCT	1 cut(s)	417
AfiI	CCNNNNNNNGG	2 cut(s)	505, 506
AluBI	AGCT	5 cut(s)	199, 235, 392, 424, 548
AluI	AGCT	5 cut(s)	199, 235, 392, 424, 548
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	470
AlwI	GGATC	2 cut(s)	34, 110
Aor13HI	TCCGGA	1 cut(s)	297
Aor51HI	AGCGCT	1 cut(s)	417
AoxI	GGCC	2 cut(s)	305, 313
ApeKI	GCWGC	3 cut(s)	392, 413, 548
ArsI	GACNNNNNNTTYG	2 cut(s)	162, 194
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	4 cut(s)	313, 337, 431, 496
AsuC2I	CCSGG	3 cut(s)	76, 162, 278
AsuHPI	GGTGA	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	212
AvaII	GGWCC	3 cut(s)	337, 431, 496
BanII	GRGCYC	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	3 cut(s)	379, 425, 535
BccI	CCATC	3 cut(s)	26, 51, 464
BceAI	ACGGC	3 cut(s)	177, 188, 425
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BcnI	CCSGG	3 cut(s)	76, 162, 278
BcoDI	GTCTC	1 cut(s)	470
BfoI	RGCGCY	1 cut(s)	419
BisI	GCNGC	7 cut(s)	92, 305, 324, 393, 396, 414, 549
BlsI	GCNGC	7 cut(s)	93, 306, 325, 394, 397, 415, 550
Bme1390I	CCNGG	3 cut(s)	76, 162, 278
Bme18I	GGWCC	3 cut(s)	337, 431, 496
BmgT120I	GGNCC	4 cut(s)	313, 337, 431, 496
BmiI	GGNNCC	8 cut(s)	80, 261, 314, 338, 339, 370, 432, 498
BmrFI	CCNGG	3 cut(s)	76, 162, 278
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BpmI	CTGGAG	1 cut(s)	121
Bpu14I	TTCGAA	1 cut(s)	212
BpuMI	CCSGG	3 cut(s)	76, 162, 278
BsaHI	GRCGYC	3 cut(s)	117, 123, 294
BsaJI	CCNNGG	2 cut(s)	308, 384
BsaWI	WCCGGW	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 506
BseAI	TCCGGA	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	308, 384
BseGI	GGATG	2 cut(s)	18, 456
BseLI	CCNNNNNNNGG	2 cut(s)	505, 506
BseMII	CTCAG	1 cut(s)	359
BseRI	GAGGAG	4 cut(s)	124, 193, 488, 558
BseXI	GCAGC	3 cut(s)	379, 425, 535
BshFI	GGCC	2 cut(s)	307, 315
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	5 cut(s)	76, 162, 257, 277, 298
BslFI	GGGAC	2 cut(s)	350, 482
BslI	CCNNNNNNNGG	2 cut(s)	505, 506
BsmAI	GTCTC	1 cut(s)	470
BsmBI	CGTCTC	1 cut(s)	470
BsmFI	GGGAC	2 cut(s)	350, 482
BsnI	GGCC	2 cut(s)	307, 315
Bsp119I	TTCGAA	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp13I	TCCGGA	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	39, 102, 186
BspACI	CCGC	6 cut(s)	91, 304, 324, 396, 470, 501
BspANI	GGCC	2 cut(s)	307, 315
BspCNI	CTCAG	1 cut(s)	358
BspEI	TCCGGA	1 cut(s)	297
BspLI	GGNNCC	8 cut(s)	80, 261, 314, 338, 339, 370, 432, 498
BspPI	GGATC	2 cut(s)	34, 110
BspT104I	TTCGAA	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	308, 384
BssMI	GATC	3 cut(s)	39, 102, 186
BssNI	GRCGYC	3 cut(s)	117, 123, 294
BssT1I	CCWWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	152, 481
BstACI	GRCGYC	3 cut(s)	117, 123, 294
BstBI	TTCGAA	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	231, 345
BstF5I	GGATG	2 cut(s)	18, 456
BstH2I	RGCGCY	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	3 cut(s)	42, 105, 189
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	3 cut(s)	39, 102, 186
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 241, 389
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	3 cut(s)	74, 160, 276
BstV1I	GCAGC	3 cut(s)	379, 425, 535
BstV2I	GAAGAC	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	307, 315
BtsCI	GGATG	2 cut(s)	18, 456
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	157, 378
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	4 cut(s)	313, 337, 431, 496
CseI	GACGC	4 cut(s)	125, 131, 255, 283
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	2 cut(s)	176, 518
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	2 cut(s)	231, 345
DpnI	GATC	3 cut(s)	41, 104, 188
DpnII	GATC	3 cut(s)	39, 102, 186
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	201
Eco47I	GGWCC	3 cut(s)	337, 431, 496
Eco47III	AGCGCT	1 cut(s)	417
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	2 cut(s)	440, 446
EcoICRI	GAGCTC	1 cut(s)	199
EcoO109I	RGGNCCY	2 cut(s)	337, 431
EcoT14I	CCWWGG	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	308
Esp3I	CGTCTC	1 cut(s)	470
FaeI	CATG	2 cut(s)	179, 521
FaiI	YATR	5 cut(s)	177, 290, 321, 467, 519
FaqI	GGGAC	2 cut(s)	350, 482
FatI	CATG	2 cut(s)	175, 517
FauI	CCCGC	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	7 cut(s)	92, 305, 324, 393, 396, 414, 549
FokI	GGATG	2 cut(s)	5, 443
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	7 cut(s)	92, 305, 324, 393, 396, 414, 549
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	7 cut(s)	92, 305, 324, 393, 396, 414, 549
GsuI	CTGGAG	1 cut(s)	121
HaeII	RGCGCY	1 cut(s)	419
HaeIII	GGCC	2 cut(s)	307, 315
HapII	CCGG	5 cut(s)	76, 162, 257, 277, 298
HgaI	GACGC	4 cut(s)	125, 131, 255, 283
HhaI	GCGC	1 cut(s)	418
Hin1I	GRCGYC	3 cut(s)	117, 123, 294
Hin1II	CATG	2 cut(s)	179, 521
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HinfI	GANTC	4 cut(s)	131, 165, 331, 343
HpaII	CCGG	5 cut(s)	76, 162, 257, 277, 298
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	3 cut(s)	102, 182, 348
Hpy188III	TCNNGA	2 cut(s)	298, 335
Hpy8I	GTNNAC	1 cut(s)	403
Hpy99I	CGWCG	3 cut(s)	125, 146, 249
HpyAV	CCTTC	2 cut(s)	219, 421
HpyCH4III	ACNGT	2 cut(s)	152, 481
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 241, 389
HpyF3I	CTNAG	2 cut(s)	231, 345
Hsp92I	GRCGYC	3 cut(s)	117, 123, 294
Hsp92II	CATG	2 cut(s)	179, 521
HspAI	GCGC	1 cut(s)	416
KflI	GGGWCCC	1 cut(s)	337
Kpn2I	TCCGGA	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	39, 102, 186
LmnI	GCTCC	2 cut(s)	84, 545
Lsp1109I	GCAGC	3 cut(s)	379, 425, 535
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	3 cut(s)	41, 104, 188
MboI	GATC	3 cut(s)	39, 102, 186
MboII	GAAGA	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	1 cut(s)	214
MlyI	GAGTC	3 cut(s)	125, 174, 337
MroI	TCCGGA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	522
MspA1I	CMGCKG	2 cut(s)	398, 503
MspI	CCGG	5 cut(s)	76, 162, 257, 277, 298
MspR9I	CCNGG	3 cut(s)	76, 162, 278
MwoI	GCNNNNNNNGC	3 cut(s)	205, 241, 389
NciI	CCSGG	3 cut(s)	76, 162, 278
NdeII	GATC	3 cut(s)	39, 102, 186
NlaIII	CATG	2 cut(s)	179, 521
NlaIV	GGNNCC	8 cut(s)	80, 261, 314, 338, 339, 370, 432, 498
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	442
NspI	RCATGY	1 cut(s)	179
NspV	TTCGAA	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 381
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	7 cut(s)	93, 306, 325, 394, 397, 415, 550
PleI	GAGTC	3 cut(s)	125, 173, 337
PpsI	GAGTC	3 cut(s)	125, 173, 337
PpuMI	RGGWCCY	2 cut(s)	337, 431
Psp124BI	GAGCTC	1 cut(s)	201
Psp5II	RGGWCCY	2 cut(s)	337, 431
PspN4I	GGNNCC	8 cut(s)	80, 261, 314, 338, 339, 370, 432, 498
PspPI	GGNCC	4 cut(s)	313, 337, 431, 496
PspPPI	RGGWCCY	2 cut(s)	337, 431
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	522
SacI	GAGCTC	1 cut(s)	201
SatI	GCNGC	7 cut(s)	92, 305, 324, 393, 396, 414, 549
Sau3AI	GATC	3 cut(s)	39, 102, 186
Sau96I	GGNCC	4 cut(s)	313, 337, 431, 496
SchI	GAGTC	3 cut(s)	125, 174, 337
ScrFI	CCNGG	3 cut(s)	76, 162, 278
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	9 cut(s)	60, 201, 237, 374, 394, 426, 495, 531, 550
SfuI	TTCGAA	1 cut(s)	212
SinI	GGWCC	3 cut(s)	337, 431, 496
SmiMI	CAYNNNNRTG	1 cut(s)	522
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	6 cut(s)	91, 304, 324, 396, 470, 501
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	3 cut(s)	74, 160, 276
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	152, 481
TaqI	TCGA	2 cut(s)	212, 512
TasI	AATT	1 cut(s)	214
TauI	GCSGC	4 cut(s)	94, 307, 326, 398
TfiI	GAWTC	1 cut(s)	331
TscAI	CASTG	2 cut(s)	157, 385
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	3 cut(s)	392, 413, 548
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	1 cut(s)	277
TspRI	CASTG	2 cut(s)	157, 385
VpaK11BI	GGWCC	3 cut(s)	337, 431, 496
XceI	RCATGY	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.