AT1G23330

palmitoyl-(protein) hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007162
Physical Location & Seq
Reverse (-)
8279554 .. 8282421
2868 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23330.1

Sequence Viewer

Length: 1416 bp
ATGGTTCCATGGTTGATGGTATCAGCTATACAAGTAGTAGAGCTATCTGTGAGCTCTGTTGTTCATATGTTTTATGGGCTTTACATATTCAGCTCCGCCGTCGCCGGAGATCTTACTCAGTCGTTGAGCGAGTCAATCTTCAAACCCAAATCCACCATTGAAGTCAAACAAATTGACCAAGAAAAGACAACAGACGTCAATGATTTGCCTCCTATTGTTTTGGTTCATGGGATTTTCGGATTTGGCAAAGGAAGATTAGGTGGTTTATCATACTTCGCTGGAGCAGAGAAGAAGGATGAGAGAGTGTTAGTGCCTGATCTGGGATCATTGACTAGTGTACACGATAGGGCAAGAGAACTGTTTTATTATCTGAAAGGTGGGTTAGTTGATTATGGTGAAGAACACAGTAAAGCTTGTGGGCACTCTCAATTTGGTCGTTTTTATGAAAAAGGGGAATACCAAGAATGGGATGAAGATCATCCTATTCACTTTGTTGGTCACTCTGCTGGTGCTCAAGTTGTTCGTGTCTTGCAGCAAATGCTTGCTGATAAGATGTTTGAGGGTTATGAGAACACGAATGAGAACTGGGTGTTGAGTCTAACGTCATTGTCAGGAGCGTTAAACGGGACTACTCGAACCTACATCGATGGAATTCAGCCTGAAGATGGGAAGTCCCTAAAACCTATATCACTGCTTCAGATTTGCAAACTTGGAGTCATAATGTATGACTGGATTGACATTCCTTGGCTCAAATCCTATTACAATTTCGGGTTCGACCATTTCAACATGTCGAGAAAGAAAACTGGTGTACGCGGCCTAGTCGATCTTCTGCTTGGAAACGCAGGTCCTTTTGCTGCATGTGGAGATTGGATCTTGCCGGACCTCTCAATCCAGGGATCAATGACGCTAAACGCTAGTCTGCAGACTTTTCCAAACACGTTCTACTTCAGCTATGCGACTAAGCGTACCACTAAACCTCTTGGAATGATGACTGTTCCTTCAGGTGTGATGGGGATTCATCCTCTGCTTTTCATCCGCGTGTTGCAGATGAGTCAGTGGCAATTTCCTCGTGACATTCCTCTGCCTTATAAAGGCTACAGAGATGAAGATTGGCAGGACAATGATGGAGCACTGAACACAATATCCATGACTCACCCACGAATTCCGGTTGAACATTCTAGTCTCATTCTTCGTAGTGACTCAGACTGTCTCCCTCTCCAACCAGGCATTTGGTACTACAAGATCGTGGAGGCAGATCATATAATGTTCATTATAAACCGAGAGCGAGCAGGTGTGGAGTTCGATTTGATCTACGACAGTATCTTTGAGCGGTGCAGGAAACATGTATTCAGGAAGGCTCCTCAGACATTGCCTAACGAAGCTCAACACCAGGAAAGAGGAGGCCAAGAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

471

Amino Acids

53.32

Weight (kDa)

5.7

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lip_C PF24708 71 - 184 3e-18 Lipase-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1089, 1274
AarI CACCTGC 1 cut(s) 1280
AatII GACGTC 1 cut(s) 198
Acc36I ACCTGC 2 cut(s) 833, 1280
AccBSI CCGCTC 1 cut(s) 1330
AccII CGCG 2 cut(s) 813, 1038
AciI CCGC 4 cut(s) 96, 813, 1036, 1330
AclWI GGATC 3 cut(s) 331, 878, 904
AcsI RAATTY 2 cut(s) 651, 1161
AcuI CTGAAG 4 cut(s) 680, 681, 931, 984
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 4 cut(s) 339, 810, 967, 1235
AfiI CCNNNNNNNGG 4 cut(s) 320, 466, 665, 1091
AflIII ACRYGT 3 cut(s) 786, 936, 1342
AgsI TTSAA 4 cut(s) 142, 161, 784, 1172
AhlI ACTAGT 1 cut(s) 332
AjnI CCWGG 3 cut(s) 891, 1222, 1389
AloI GAACNNNNNNTCC 2 cut(s) 1127, 1159
AluBI AGCT 7 cut(s) 26, 43, 54, 93, 413, 951, 1382
AluI AGCT 7 cut(s) 26, 43, 54, 93, 413, 951, 1382
Alw21I GWGCWC 3 cut(s) 56, 514, 1132
Alw26I GTCTC 2 cut(s) 1187, 1214
AlwI GGATC 3 cut(s) 331, 878, 904
AoxI GGCC 2 cut(s) 814, 1402
ApeKI GCWGC 2 cut(s) 532, 854
ApoI RAATTY 2 cut(s) 651, 1161
ArsI GACNNNNNNTTYG 4 cut(s) 699, 731, 1307, 1339
AspS9I GGNCC 2 cut(s) 845, 880
AsuHPI GGTGA 2 cut(s) 407, 1145
AvaII GGWCC 2 cut(s) 845, 880
BaeGI GKGCMC 1 cut(s) 423
BaeI ACNNNNGTAYC 2 cut(s) 1303, 1336
BanII GRGCYC 1 cut(s) 56
BauI CACGAG 1 cut(s) 1068
Bbv12I GWGCWC 3 cut(s) 56, 514, 1132
BbvI GCAGC 2 cut(s) 544, 841
BccI CCATC 5 cut(s) 10, 641, 659, 1003, 1118
BceAI ACGGC 1 cut(s) 83
BcgI CGANNNNNNTGC 2 cut(s) 1049, 1083
BciT130I CCWGG 3 cut(s) 893, 1224, 1391
BcoDI GTCTC 2 cut(s) 1187, 1214
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 4 cut(s) 333, 818, 915, 1179
BfmI CTRYAG 2 cut(s) 920, 1096
BfuAI ACCTGC 2 cut(s) 833, 1280
BglII AGATCT 1 cut(s) 109
BisI GCNGC 3 cut(s) 533, 814, 855
BlsI GCNGC 3 cut(s) 534, 815, 856
Bme1390I CCNGG 3 cut(s) 893, 1224, 1391
Bme18I GGWCC 2 cut(s) 845, 880
BmgT120I GGNCC 2 cut(s) 845, 880
BmiI GGNNCC 2 cut(s) 6, 1359
BmrFI CCNGG 3 cut(s) 893, 1224, 1391
BmrI ACTGGG 1 cut(s) 595
BmuI ACTGGG 1 cut(s) 595
BpmI CTGGAG 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 498
Bsa29I ATCGAT 1 cut(s) 645
BsaBI GATNNNNATC 1 cut(s) 474
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 3 cut(s) 8, 743, 892
BsaWI WCCGGW 1 cut(s) 1165
Bsc4I CCNNNNNNNGG 4 cut(s) 320, 466, 665, 1091
Bse1I ACTGG 3 cut(s) 590, 734, 808
Bse3DI GCAATG 1 cut(s) 1367
Bse8I GATNNNNATC 1 cut(s) 474
BseBI CCWGG 3 cut(s) 893, 1224, 1391
BseCI ATCGAT 1 cut(s) 645
BseDI CCNNGG 3 cut(s) 8, 743, 892
BseGI GGATG 5 cut(s) 301, 475, 478, 1018, 1032
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 4 cut(s) 320, 466, 665, 1091
BseMI GCAATG 1 cut(s) 1367
BseMII CTCAG 3 cut(s) 131, 1215, 1376
BseNI ACTGG 3 cut(s) 590, 734, 808
BseRI GAGGAG 2 cut(s) 1350, 1413
BseSI GKGCMC 1 cut(s) 423
BseXI GCAGC 2 cut(s) 544, 841
BsgI GTGCAG 1 cut(s) 1354
Bsh1236I CGCG 2 cut(s) 813, 1038
BshFI GGCC 2 cut(s) 816, 1404
BshVI ATCGAT 1 cut(s) 645
BsiHKAI GWGCWC 3 cut(s) 56, 514, 1132
BsiSI CCGG 3 cut(s) 105, 878, 1166
BslFI GGGAC 2 cut(s) 640, 658
BslI CCNNNNNNNGG 4 cut(s) 320, 466, 665, 1091
BsmAI GTCTC 2 cut(s) 1187, 1214
BsmFI GGGAC 2 cut(s) 640, 658
BsnI GGCC 2 cut(s) 816, 1404
Bsp1286I GDGCHC 4 cut(s) 56, 423, 514, 1132
Bsp1407I TGTACA 1 cut(s) 337
Bsp19I CCATGG 1 cut(s) 8
BspACI CCGC 4 cut(s) 96, 813, 1036, 1330
BspANI GGCC 2 cut(s) 816, 1404
BspCNI CTCAG 3 cut(s) 130, 1214, 1375
BspDI ATCGAT 1 cut(s) 645
BspFNI CGCG 2 cut(s) 813, 1038
BspLI GGNNCC 2 cut(s) 6, 1359
BspMAI CTGCAG 1 cut(s) 924
BspMI ACCTGC 2 cut(s) 833, 1280
BspPI GGATC 3 cut(s) 331, 878, 904
BsrBI CCGCTC 1 cut(s) 1330
BsrDI GCAATG 1 cut(s) 1367
BsrGI TGTACA 1 cut(s) 337
BsrI ACTGG 3 cut(s) 590, 734, 808
BssECI CCNNGG 3 cut(s) 8, 743, 892
BssNI GRCGYC 1 cut(s) 195
BssSI CACGAG 1 cut(s) 1068
BssT1I CCWWGG 2 cut(s) 8, 743
Bst2BI CACGAG 1 cut(s) 1068
Bst2UI CCWGG 3 cut(s) 893, 1224, 1391
Bst4CI ACNGT 5 cut(s) 360, 407, 994, 1208, 1319
Bst6I CTCTTC 1 cut(s) 1404
BstACI GRCGYC 1 cut(s) 195
BstAPI GCANNNNNTGC 1 cut(s) 538
BstAUI TGTACA 1 cut(s) 337
BstC8I GCNNGC 2 cut(s) 543, 1287
BstDEI CTNAG 4 cut(s) 117, 960, 1201, 1362
BstDSI CCRYGG 1 cut(s) 8
BstENI CCTNNNNNAGG 1 cut(s) 1089
BstF5I GGATG 5 cut(s) 301, 475, 478, 1018, 1032
BstFNI CGCG 2 cut(s) 813, 1038
BstMAI GTCTC 2 cut(s) 1187, 1214
BstMWI GCNNNNNNNGC 1 cut(s) 538
BstNI CCWGG 3 cut(s) 893, 1224, 1391
BstNSI RCATGY 3 cut(s) 790, 861, 1346
BstSCI CCNGG 3 cut(s) 891, 1222, 1389
BstSFI CTRYAG 2 cut(s) 920, 1096
BstSLI GKGCMC 1 cut(s) 423
BstUI CGCG 2 cut(s) 813, 1038
BstV1I GCAGC 2 cut(s) 544, 841
BstX2I RGATCY 2 cut(s) 109, 870
BstXI CCANNNNNNTGG 1 cut(s) 1230
BstYI RGATCY 2 cut(s) 109, 870
Bsu15I ATCGAT 1 cut(s) 645
BsuRI GGCC 2 cut(s) 816, 1404
BsuTUI ATCGAT 1 cut(s) 645
BtgI CCRYGG 1 cut(s) 8
BtsCI GGATG 5 cut(s) 301, 475, 478, 1018, 1032
BtsI GCAGTG 1 cut(s) 689
BtsIMutI CAGTG 3 cut(s) 689, 1061, 1130
BveI ACCTGC 2 cut(s) 833, 1280
Cac8I GCNNGC 2 cut(s) 543, 1287
Cfr13I GGNCC 2 cut(s) 845, 880
ClaI ATCGAT 1 cut(s) 645
CseI GACGC 1 cut(s) 913
Csp6I GTAC 4 cut(s) 338, 809, 966, 1234
CviAII CATG 6 cut(s) 9, 227, 787, 858, 1147, 1343
CviQI GTAC 4 cut(s) 338, 809, 966, 1234
DdeI CTNAG 4 cut(s) 117, 960, 1201, 1362
Eam1104I CTCTTC 1 cut(s) 1404
EarI CTCTTC 1 cut(s) 1404
EciI GGCGGA 1 cut(s) 85
Ecl136II GAGCTC 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 8, 743
Eco24I GRGCYC 1 cut(s) 56
Eco47I GGWCC 2 cut(s) 845, 880
Eco53kI GAGCTC 1 cut(s) 54
Eco57I CTGAAG 4 cut(s) 680, 681, 931, 984
EcoICRI GAGCTC 1 cut(s) 54
EcoNI CCTNNNNNAGG 1 cut(s) 1089
EcoO109I RGGNCCY 1 cut(s) 845
EcoRI GAATTC 2 cut(s) 651, 1161
EcoRII CCWGG 3 cut(s) 891, 1222, 1389
EcoT14I CCWWGG 2 cut(s) 8, 743
EcoT38I GRGCYC 1 cut(s) 56
ErhI CCWWGG 2 cut(s) 8, 743
FaeI CATG 6 cut(s) 12, 230, 790, 861, 1150, 1346
FaqI GGGAC 2 cut(s) 640, 658
FatI CATG 6 cut(s) 8, 226, 786, 857, 1146, 1342
FauNDI CATATG 1 cut(s) 66
Fnu4HI GCNGC 3 cut(s) 533, 814, 855
FokI GGATG 5 cut(s) 308, 465, 482, 1005, 1019
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 3 cut(s) 533, 814, 855
FspBI CTAG 4 cut(s) 333, 818, 915, 1179
GluI GCNGC 3 cut(s) 533, 814, 855
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 2 cut(s) 816, 1404
HapII CCGG 3 cut(s) 105, 878, 1166
HgaI GACGC 1 cut(s) 913
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 6 cut(s) 12, 230, 790, 861, 1150, 1346
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 7 cut(s) 131, 595, 714, 1015, 1051, 1150, 1199
HpaII CCGG 3 cut(s) 105, 878, 1166
HphI GGTGA 2 cut(s) 407, 1145
Hpy166II GTNNAC 3 cut(s) 338, 340, 809
Hpy188I TCNGA 5 cut(s) 239, 372, 699, 1204, 1365
Hpy188III TCNNGA 4 cut(s) 612, 792, 1070, 1351
Hpy8I GTNNAC 3 cut(s) 338, 340, 809
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 3 cut(s) 286, 1008, 1348
HpyCH4III ACNGT 5 cut(s) 360, 407, 994, 1208, 1319
HpyCH4IV ACGT 3 cut(s) 195, 602, 938
HpyCH4V TGCA 6 cut(s) 532, 705, 857, 922, 1045, 1335
HpyF10VI GCNNNNNNNGC 1 cut(s) 538
HpyF3I CTNAG 4 cut(s) 117, 960, 1201, 1362
HpySE526I ACGT 3 cut(s) 195, 602, 938
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 6 cut(s) 12, 230, 790, 861, 1150, 1346
LmnI GCTCC 5 cut(s) 98, 281, 614, 1127, 1363
Lsp1109I GCAGC 2 cut(s) 544, 841
MaeI CTAG 4 cut(s) 333, 818, 915, 1179
MaeII ACGT 3 cut(s) 195, 602, 938
MaeIII GTNAC 3 cut(s) 497, 1070, 1196
MbiI CCGCTC 1 cut(s) 1330
MboII GAAGA 9 cut(s) 130, 264, 301, 410, 485, 674, 818, 1118, 1181
MflI RGATCY 2 cut(s) 109, 870
MhlI GDGCHC 4 cut(s) 56, 423, 514, 1132
MluCI AATT 6 cut(s) 171, 428, 651, 763, 1061, 1161
MlyI GAGTC 6 cut(s) 140, 604, 723, 1060, 1144, 1193
MmeI TCCRAC 1 cut(s) 1243
MseI TTAA 1 cut(s) 620
MslI CAYNNNNRTG 1 cut(s) 1037
MspI CCGG 3 cut(s) 105, 878, 1166
MspR9I CCNGG 3 cut(s) 893, 1224, 1391
MvaI CCWGG 3 cut(s) 893, 1224, 1391
MvnI CGCG 2 cut(s) 813, 1038
MwoI GCNNNNNNNGC 1 cut(s) 538
NcoI CCATGG 1 cut(s) 8
NdeI CATATG 1 cut(s) 66
NlaIII CATG 6 cut(s) 12, 230, 790, 861, 1150, 1346
NlaIV GGNNCC 2 cut(s) 6, 1359
NmuCI GTSAC 3 cut(s) 497, 1070, 1196
NspI RCATGY 3 cut(s) 790, 861, 1346
PaqCI CACCTGC 1 cut(s) 1280
PciI ACATGT 2 cut(s) 786, 1342
PfeI GAWTC 1 cut(s) 1015
PkrI GCNGC 3 cut(s) 534, 815, 856
PleI GAGTC 6 cut(s) 139, 603, 722, 1059, 1144, 1193
PpsI GAGTC 6 cut(s) 139, 603, 722, 1059, 1144, 1193
PpuMI RGGWCCY 1 cut(s) 845
PscI ACATGT 2 cut(s) 786, 1342
PsiI TTATAA 2 cut(s) 1089, 1274
Psp124BI GAGCTC 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 845
Psp6I CCWGG 3 cut(s) 891, 1222, 1389
PspGI CCWGG 3 cut(s) 891, 1222, 1389
PspN4I GGNNCC 2 cut(s) 6, 1359
PspPI GGNCC 2 cut(s) 845, 880
PspPPI RGGWCCY 1 cut(s) 845
PstI CTGCAG 1 cut(s) 924
PsuI RGATCY 2 cut(s) 109, 870
RsaI GTAC 4 cut(s) 339, 810, 967, 1235
RsaNI GTAC 4 cut(s) 338, 809, 966, 1234
RseI CAYNNNNRTG 1 cut(s) 1037
SacI GAGCTC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 620
SatI GCNGC 3 cut(s) 533, 814, 855
Sau96I GGNCC 2 cut(s) 845, 880
SchI GAGTC 6 cut(s) 140, 604, 723, 1060, 1144, 1193
ScrFI CCNGG 3 cut(s) 893, 1224, 1391
SduI GDGCHC 4 cut(s) 56, 423, 514, 1132
SfcI CTRYAG 2 cut(s) 920, 1096
SinI GGWCC 2 cut(s) 845, 880
SmiMI CAYNNNNRTG 1 cut(s) 1037
SmlI CTYRAG 1 cut(s) 513
SmoI CTYRAG 1 cut(s) 513
SpeI ACTAGT 1 cut(s) 332
Sse9I AATT 6 cut(s) 171, 428, 651, 763, 1061, 1161
SsiI CCGC 4 cut(s) 96, 813, 1036, 1330
SspMI CTAG 4 cut(s) 333, 818, 915, 1179
SstI GAGCTC 1 cut(s) 56
StyD4I CCNGG 3 cut(s) 891, 1222, 1389
StyI CCWWGG 2 cut(s) 8, 743
TaaI ACNGT 5 cut(s) 360, 407, 994, 1208, 1319
TaiI ACGT 3 cut(s) 198, 605, 941
TaqI TCGA 6 cut(s) 634, 645, 774, 791, 822, 1302
TasI AATT 6 cut(s) 171, 428, 651, 763, 1061, 1161
TatI WGTACW 1 cut(s) 337
TauI GCSGC 1 cut(s) 816
TfiI GAWTC 1 cut(s) 1015
Tru1I TTAA 1 cut(s) 620
Tru9I TTAA 1 cut(s) 620
TscAI CASTG 3 cut(s) 696, 1061, 1137
TseFI GTSAC 3 cut(s) 497, 1070, 1196
TseI GCWGC 2 cut(s) 532, 854
Tsp45I GTSAC 3 cut(s) 497, 1070, 1196
TspDTI ATGAA 8 cut(s) 53, 215, 459, 486, 1007, 1021, 1119, 1258
TspRI CASTG 3 cut(s) 696, 1061, 1137
VpaK11BI GGWCC 2 cut(s) 845, 880
XagI CCTNNNNNAGG 1 cut(s) 1089
XapI RAATTY 2 cut(s) 651, 1161
XceI RCATGY 3 cut(s) 790, 861, 1346
XspI CTAG 4 cut(s) 333, 818, 915, 1179
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.