RchiOBHm_Chr4g0433281

palmitoyl-(protein) hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007162
Physical Location & Seq
Forward (+)
57470239 .. 57473672
3434 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40180

Sequence Viewer

Length: 1398 bp
ATGTACGGTAGTGTGAGGAAGATGATCAGATTATGGATAGCCGCACTGCAATTTTCGGAGCTGTTTGTGAGCACCATGGTTCATTTGCTTTATGGGTTTTACATATTCAGCTCAGCCGTCGCCGGTGACCTCTCGCTGGCCTTGAATGAGCTCTTGTGTAAGCCCAACACCGACACGAAAGAGTTGGTGCCCAGTGGGACCTCGGCCAATGGGGCTCTGCCTCCTATTGTTTTGGTCCATGGGATTTTTGGCTTTGGCAAAGGGAGGCTGGGAGGTTTGTCGTATTTCGCCGGAGCTGAGAAGAAAGACGAGAGGGTTCTGGTGCCGGATTTGGGATCTCTGACCAGCGTTTACGACAGGGCTCGTGAGTTGTTCTACTATTTGAAAGGCGGGCGGGTCGATTATGGTGAAGAACACAGCAAAGCCTGTGGGCATTCCCAGTTTGGCCGTCTTTATGAACAAGGGCACTACCCTGAATGGGATGAGGATCATCCTATTCACTTTGTGGGGCATTCCGCCGGAGCTCAGGTCGTCCGTGTTCTGCAGCAAATGCTTGCTGATAAGGCTTTCAAGGGGTATGAGAATACTAATGAGAATTGGGTATTGAGCATCACATCATTGTCCGGAGCGTTCAATGGGACTACAAGAACTTACTTGGATGGAATGCAGCCTGAGGATGGCAAAACCCTGAAGCCCATATGTCTGCTGCAACTATGTCGCATAGGAGTGATTATTTATGACTGGCTAGACATTTCCTGGCTAAAGGAATATTACAACTTTGGGTTTGATCACTACAATATCACATGGAAAAAAGTCGGTGTTTGGGGTCTCATTGATTGCCTCTTGGGAAATTCGGGACCATTTGCTTCTGGGGATTGGATCCTCCCTGACCTTACAATTCAAGGTTCCATAAGACTCAACAGCCATCTACAGTCCTTTCCAAATACATACTACTTCAGCTATGCCACAAAGCGCACTAGGAAGATATGGGGTGTCACACTTCCTTCTAGCATATTCGGAATTCACCCTCTGCTTTTCATCAGAGTACTGCAGATGAGCCAATGGCGTCATCCTCCTGATGTCTCTCCCCCATATAAGGGTTACAGAGATGAGGATTGGCAAGAAAATGATGGAGCTCTCAATACCATCTCCATGACTCGCCCTCTTCTTCCTGTTGAACACCCAGGCCGTTTTGTGAAAGATGATTCAGAGTGCCACCCCTTGCAACCAGGCATCTGGTACTACAAGATTGTGGAAGCTGACCACATATTCTTCATTGTGAATCGGGAGAGAGCAGGAGTTCAATTTGATCTGATATATGACAGCATTTTTGAAAGGTGCAGAAAGCATGTATTTAGAAAAACTCCACCAACATTACCCAACCAAATGCACCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

465

Amino Acids

53.03

Weight (kDa)

6.81

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lip_C PF24708 75 - 187 2.9e-20 Lipase-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 187, 322
AccIII TCCGGA 1 cut(s) 623
AciI CCGC 4 cut(s) 42, 390, 394, 516
AclWI GGATC 4 cut(s) 343, 495, 874, 887
AcoI YGGCCR 2 cut(s) 204, 445
AcsI RAATTY 2 cut(s) 850, 1020
AcuI CTGAAG 2 cut(s) 710, 940
AcyI GRCGYC 1 cut(s) 1066
AdeI CACNNNGTG 1 cut(s) 505
AfaI GTAC 3 cut(s) 5, 1047, 1241
AfiI CCNNNNNNNGG 6 cut(s) 136, 332, 478, 677, 1096, 1097
AgsI TTSAA 8 cut(s) 145, 385, 571, 634, 902, 1178, 1304, 1334
AjnI CCWGG 3 cut(s) 755, 1183, 1228
AluBI AGCT 8 cut(s) 61, 111, 151, 296, 524, 960, 1136, 1259
AluI AGCT 8 cut(s) 61, 111, 151, 296, 524, 960, 1136, 1259
Alw21I GWGCWC 4 cut(s) 74, 153, 526, 1138
Alw26I GTCTC 2 cut(s) 833, 1087
AlwI GGATC 4 cut(s) 343, 495, 874, 887
Aor13HI TCCGGA 1 cut(s) 623
AoxI GGCC 4 cut(s) 138, 204, 445, 1186
ApeKI GCWGC 3 cut(s) 544, 667, 706
ApoI RAATTY 2 cut(s) 850, 1020
ArsI GACNNNNNNTTYG 2 cut(s) 1313, 1345
AspLEI GCGC 1 cut(s) 975
AspS9I GGNCC 3 cut(s) 198, 235, 857
AsuHPI GGTGA 3 cut(s) 137, 419, 1016
AvaII GGWCC 3 cut(s) 198, 235, 857
AxyI CCTNAGG 1 cut(s) 672
BaeGI GKGCMC 2 cut(s) 192, 468
BamHI GGATCC 1 cut(s) 879
BanI GGYRCC 2 cut(s) 187, 322
BanII GRGCYC 5 cut(s) 153, 217, 364, 526, 1138
BauI CACGAG 1 cut(s) 363
Bbv12I GWGCWC 4 cut(s) 74, 153, 526, 1138
BbvI GCAGC 3 cut(s) 556, 679, 693
BccI CCATC 5 cut(s) 653, 671, 933, 1124, 1154
BceAI ACGGC 3 cut(s) 101, 432, 1173
BcgI CGANNNNNNTGC 2 cut(s) 698, 732
BciT130I CCWGG 3 cut(s) 757, 1185, 1230
BclI TGATCA 2 cut(s) 24, 787
BcoDI GTCTC 2 cut(s) 833, 1087
BfaI CTAG 3 cut(s) 746, 978, 1008
BfmI CTRYAG 3 cut(s) 542, 929, 1049
BglI GCCNNNNNGGC 1 cut(s) 212
BisI GCNGC 4 cut(s) 42, 545, 668, 707
BlpI GCTNAGC 1 cut(s) 112
BlsI GCNGC 4 cut(s) 43, 546, 669, 708
BmcAI AGTACT 1 cut(s) 1047
Bme1390I CCNGG 3 cut(s) 757, 1185, 1230
Bme18I GGWCC 3 cut(s) 198, 235, 857
BmgT120I GGNCC 3 cut(s) 198, 235, 857
BmiI GGNNCC 6 cut(s) 189, 199, 324, 858, 881, 907
BmrFI CCNGG 3 cut(s) 757, 1185, 1230
BmrI ACTGGG 2 cut(s) 186, 433
BmsI GCATC 2 cut(s) 618, 1242
BmuI ACTGGG 2 cut(s) 186, 433
Bpu10I CCTNAGC 1 cut(s) 525
Bpu1102I GCTNAGC 1 cut(s) 112
BsaBI GATNNNNATC 1 cut(s) 486
BsaHI GRCGYC 1 cut(s) 1066
BsaI GGTCTC 1 cut(s) 833
BsaJI CCNNGG 4 cut(s) 75, 201, 238, 1183
BsaWI WCCGGW 1 cut(s) 623
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 6 cut(s) 136, 332, 478, 677, 1096, 1097
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 3 cut(s) 192, 439, 746
Bse21I CCTNAGG 1 cut(s) 672
Bse8I GATNNNNATC 1 cut(s) 486
BseAI TCCGGA 1 cut(s) 623
BseBI CCWGG 3 cut(s) 757, 1185, 1230
BseDI CCNNGG 4 cut(s) 75, 201, 238, 1183
BseGI GGATG 5 cut(s) 487, 490, 664, 682, 1069
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 6 cut(s) 136, 332, 478, 677, 1096, 1097
BseMII CTCAG 4 cut(s) 126, 288, 539, 663
BseNI ACTGG 3 cut(s) 192, 439, 746
BseSI GKGCMC 2 cut(s) 192, 468
BseXI GCAGC 3 cut(s) 556, 679, 693
BseYI CCCAGC 1 cut(s) 268
BsgI GTGCAG 1 cut(s) 1360
BshFI GGCC 4 cut(s) 140, 206, 447, 1188
BshNI GGYRCC 2 cut(s) 187, 322
BsiHKAI GWGCWC 4 cut(s) 74, 153, 526, 1138
BsiSI CCGG 5 cut(s) 123, 291, 326, 519, 624
BslFI GGGAC 3 cut(s) 211, 652, 870
BslI CCNNNNNNNGG 6 cut(s) 136, 332, 478, 677, 1096, 1097
BsmAI GTCTC 2 cut(s) 833, 1087
BsmFI GGGAC 3 cut(s) 211, 652, 870
BsmI GAATGC 3 cut(s) 433, 511, 669
BsnI GGCC 4 cut(s) 140, 206, 447, 1188
Bso31I GGTCTC 1 cut(s) 833
Bsp1286I GDGCHC 8 cut(s) 74, 153, 192, 217, 364, 468, 526, 1138
Bsp13I TCCGGA 1 cut(s) 623
Bsp143I GATC 6 cut(s) 24, 335, 487, 787, 879, 1309
Bsp1720I GCTNAGC 1 cut(s) 112
Bsp19I CCATGG 2 cut(s) 75, 238
BspACI CCGC 4 cut(s) 42, 390, 394, 516
BspANI GGCC 4 cut(s) 140, 206, 447, 1188
BspCNI CTCAG 4 cut(s) 125, 289, 538, 664
BspEI TCCGGA 1 cut(s) 623
BspLI GGNNCC 6 cut(s) 189, 199, 324, 858, 881, 907
BspMAI CTGCAG 2 cut(s) 546, 1053
BspPI GGATC 4 cut(s) 343, 495, 874, 887
BspT107I GGYRCC 2 cut(s) 187, 322
BspTNI GGTCTC 1 cut(s) 833
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 3 cut(s) 192, 439, 746
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 4 cut(s) 75, 201, 238, 1183
BssMI GATC 6 cut(s) 24, 335, 487, 787, 879, 1309
BssNI GRCGYC 1 cut(s) 1066
BssSI CACGAG 1 cut(s) 363
BssT1I CCWWGG 2 cut(s) 75, 238
Bst2BI CACGAG 1 cut(s) 363
Bst2UI CCWGG 3 cut(s) 757, 1185, 1230
Bst4CI ACNGT 2 cut(s) 8, 933
Bst6I CTCTTC 1 cut(s) 1170
BstACI GRCGYC 1 cut(s) 1066
BstAPI GCANNNNNTGC 1 cut(s) 550
BstC8I GCNNGC 3 cut(s) 138, 392, 555
BstDEI CTNAG 4 cut(s) 112, 297, 525, 672
BstDSI CCRYGG 2 cut(s) 75, 238
BstEII GGTNACC 1 cut(s) 125
BstF5I GGATG 5 cut(s) 487, 490, 664, 682, 1069
BstHHI GCGC 1 cut(s) 975
BstKTI GATC 6 cut(s) 27, 338, 490, 790, 882, 1312
BstMAI GTCTC 2 cut(s) 833, 1087
BstMBI GATC 6 cut(s) 24, 335, 487, 787, 879, 1309
BstMWI GCNNNNNNNGC 3 cut(s) 212, 550, 563
BstNI CCWGG 3 cut(s) 757, 1185, 1230
BstNSI RCATGY 1 cut(s) 1352
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 3 cut(s) 755, 1183, 1228
BstSFI CTRYAG 3 cut(s) 542, 929, 1049
BstSLI GKGCMC 2 cut(s) 192, 468
BstV1I GCAGC 3 cut(s) 556, 679, 693
BstX2I RGATCY 2 cut(s) 335, 879
BstXI CCANNNNNNTGG 1 cut(s) 1236
BstYI RGATCY 2 cut(s) 335, 879
Bsu36I CCTNAGG 1 cut(s) 672
BsuRI GGCC 4 cut(s) 140, 206, 447, 1188
BtgI CCRYGG 2 cut(s) 75, 238
BtsCI GGATG 5 cut(s) 487, 490, 664, 682, 1069
BtsI GCAGTG 1 cut(s) 44
BtsIMutI CAGTG 2 cut(s) 44, 199
Cac8I GCNNGC 3 cut(s) 138, 392, 555
CfoI GCGC 1 cut(s) 975
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 3 cut(s) 198, 235, 857
CseI GACGC 1 cut(s) 1055
Csp6I GTAC 3 cut(s) 4, 1046, 1240
CspCI CAANNNNNGTGG 2 cut(s) 409, 444
CviAII CATG 5 cut(s) 76, 239, 804, 1153, 1349
CviQI GTAC 3 cut(s) 4, 1046, 1240
DdeI CTNAG 4 cut(s) 112, 297, 525, 672
DpnI GATC 6 cut(s) 26, 337, 489, 789, 881, 1311
DpnII GATC 6 cut(s) 24, 335, 487, 787, 879, 1309
DraIII CACNNNGTG 1 cut(s) 505
EaeI YGGCCR 2 cut(s) 204, 445
Eam1104I CTCTTC 1 cut(s) 1170
EarI CTCTTC 1 cut(s) 1170
EciI GGCGGA 1 cut(s) 505
Ecl136II GAGCTC 3 cut(s) 151, 524, 1136
Eco130I CCWWGG 2 cut(s) 75, 238
Eco24I GRGCYC 5 cut(s) 153, 217, 364, 526, 1138
Eco31I GGTCTC 1 cut(s) 833
Eco47I GGWCC 3 cut(s) 198, 235, 857
Eco53kI GAGCTC 3 cut(s) 151, 524, 1136
Eco57I CTGAAG 2 cut(s) 710, 940
Eco81I CCTNAGG 1 cut(s) 672
Eco91I GGTNACC 1 cut(s) 125
EcoICRI GAGCTC 3 cut(s) 151, 524, 1136
EcoO109I RGGNCCY 1 cut(s) 198
EcoO65I GGTNACC 1 cut(s) 125
EcoRI GAATTC 1 cut(s) 1020
EcoRII CCWGG 3 cut(s) 755, 1183, 1228
EcoT14I CCWWGG 2 cut(s) 75, 238
EcoT38I GRGCYC 5 cut(s) 153, 217, 364, 526, 1138
ErhI CCWWGG 2 cut(s) 75, 238
FaeI CATG 5 cut(s) 79, 242, 807, 1156, 1352
FaqI GGGAC 3 cut(s) 211, 652, 870
FatI CATG 5 cut(s) 75, 238, 803, 1152, 1348
FauI CCCGC 2 cut(s) 383, 387
FauNDI CATATG 1 cut(s) 698
FbaI TGATCA 2 cut(s) 24, 787
Fnu4HI GCNGC 4 cut(s) 42, 545, 668, 707
FokI GGATG 5 cut(s) 477, 494, 671, 689, 1056
FriOI GRGCYC 5 cut(s) 153, 217, 364, 526, 1138
Fsp4HI GCNGC 4 cut(s) 42, 545, 668, 707
FspBI CTAG 3 cut(s) 746, 978, 1008
GlaI GCGC 1 cut(s) 974
GluI GCNGC 4 cut(s) 42, 545, 668, 707
GsaI CCCAGC 1 cut(s) 272
HaeIII GGCC 4 cut(s) 140, 206, 447, 1188
HapII CCGG 5 cut(s) 123, 291, 326, 519, 624
HgaI GACGC 1 cut(s) 1055
HhaI GCGC 1 cut(s) 975
Hin1I GRCGYC 1 cut(s) 1066
Hin1II CATG 5 cut(s) 79, 242, 807, 1156, 1352
Hin6I GCGC 1 cut(s) 973
HinP1I GCGC 1 cut(s) 973
HinfI GANTC 4 cut(s) 915, 1156, 1205, 1282
HpaII CCGG 5 cut(s) 123, 291, 326, 519, 624
HphI GGTGA 3 cut(s) 137, 419, 1016
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 7 cut(s) 29, 58, 342, 1019, 1043, 1210, 1314
Hpy188III TCNNGA 5 cut(s) 365, 624, 855, 1076, 1286
Hpy8I GTNNAC 1 cut(s) 352
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 1014
HpyCH4III ACNGT 2 cut(s) 8, 933
HpyCH4V TGCA 8 cut(s) 49, 544, 667, 709, 1051, 1225, 1341, 1390
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 550, 563
HpyF3I CTNAG 4 cut(s) 112, 297, 525, 672
Hsp92I GRCGYC 1 cut(s) 1066
Hsp92II CATG 5 cut(s) 79, 242, 807, 1156, 1352
HspAI GCGC 1 cut(s) 973
Kpn2I TCCGGA 1 cut(s) 623
Ksp22I TGATCA 2 cut(s) 24, 787
Kzo9I GATC 6 cut(s) 24, 335, 487, 787, 879, 1309
LmnI GCTCC 5 cut(s) 58, 293, 521, 626, 1133
Lsp1109I GCAGC 3 cut(s) 556, 679, 693
LweI GCATC 2 cut(s) 618, 1242
MaeI CTAG 3 cut(s) 746, 978, 1008
MaeIII GTNAC 3 cut(s) 125, 994, 1100
MalI GATC 6 cut(s) 26, 337, 489, 789, 881, 1311
MboI GATC 6 cut(s) 24, 335, 487, 787, 879, 1309
MboII GAAGA 7 cut(s) 31, 313, 422, 994, 1157, 1160, 1264
MflI RGATCY 2 cut(s) 335, 879
MhlI GDGCHC 8 cut(s) 74, 153, 192, 217, 364, 468, 526, 1138
MluCI AATT 6 cut(s) 50, 595, 850, 897, 1020, 1304
MlyI GAGTC 2 cut(s) 909, 1150
MroI TCCGGA 1 cut(s) 623
MslI CAYNNNNRTG 2 cut(s) 725, 1151
MspI CCGG 5 cut(s) 123, 291, 326, 519, 624
MspR9I CCNGG 3 cut(s) 757, 1185, 1230
Mva1269I GAATGC 3 cut(s) 433, 511, 669
MvaI CCWGG 3 cut(s) 757, 1185, 1230
MwoI GCNNNNNNNGC 3 cut(s) 212, 550, 563
NcoI CCATGG 2 cut(s) 75, 238
NdeI CATATG 1 cut(s) 698
NdeII GATC 6 cut(s) 24, 335, 487, 787, 879, 1309
NlaIII CATG 5 cut(s) 79, 242, 807, 1156, 1352
NlaIV GGNNCC 6 cut(s) 189, 199, 324, 858, 881, 907
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 2 cut(s) 125, 994
NspI RCATGY 1 cut(s) 1352
PctI GAATGC 3 cut(s) 433, 511, 669
PfeI GAWTC 2 cut(s) 1205, 1282
PkrI GCNGC 4 cut(s) 43, 546, 669, 708
PleI GAGTC 2 cut(s) 909, 1150
PpsI GAGTC 2 cut(s) 909, 1150
PpuMI RGGWCCY 1 cut(s) 198
Psp124BI GAGCTC 3 cut(s) 153, 526, 1138
Psp5II RGGWCCY 1 cut(s) 198
Psp6I CCWGG 3 cut(s) 755, 1183, 1228
PspEI GGTNACC 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 268
PspGI CCWGG 3 cut(s) 755, 1183, 1228
PspN4I GGNNCC 6 cut(s) 189, 199, 324, 858, 881, 907
PspPI GGNCC 3 cut(s) 198, 235, 857
PspPPI RGGWCCY 1 cut(s) 198
PstI CTGCAG 2 cut(s) 546, 1053
PsuI RGATCY 2 cut(s) 335, 879
RsaI GTAC 3 cut(s) 5, 1047, 1241
RsaNI GTAC 3 cut(s) 4, 1046, 1240
RseI CAYNNNNRTG 2 cut(s) 725, 1151
SacI GAGCTC 3 cut(s) 153, 526, 1138
SatI GCNGC 4 cut(s) 42, 545, 668, 707
Sau3AI GATC 6 cut(s) 24, 335, 487, 787, 879, 1309
Sau96I GGNCC 3 cut(s) 198, 235, 857
ScaI AGTACT 1 cut(s) 1047
SchI GAGTC 2 cut(s) 909, 1150
ScrFI CCNGG 3 cut(s) 757, 1185, 1230
SduI GDGCHC 8 cut(s) 74, 153, 192, 217, 364, 468, 526, 1138
SfaNI GCATC 2 cut(s) 618, 1242
SfcI CTRYAG 3 cut(s) 542, 929, 1049
SgrAI CRCCGGYG 1 cut(s) 122
SinI GGWCC 3 cut(s) 198, 235, 857
SmiMI CAYNNNNRTG 2 cut(s) 725, 1151
Sse9I AATT 6 cut(s) 50, 595, 850, 897, 1020, 1304
SsiI CCGC 4 cut(s) 42, 390, 394, 516
SspI AATATT 1 cut(s) 770
SspMI CTAG 3 cut(s) 746, 978, 1008
SstI GAGCTC 3 cut(s) 153, 526, 1138
StyD4I CCNGG 3 cut(s) 755, 1183, 1228
StyI CCWWGG 2 cut(s) 75, 238
TaaI ACNGT 2 cut(s) 8, 933
TaqI TCGA 1 cut(s) 399
TasI AATT 6 cut(s) 50, 595, 850, 897, 1020, 1304
TatI WGTACW 1 cut(s) 1045
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 2 cut(s) 1205, 1282
TscAI CASTG 2 cut(s) 51, 199
TseFI GTSAC 2 cut(s) 125, 994
TseI GCWGC 3 cut(s) 544, 667, 706
Tsp45I GTSAC 2 cut(s) 125, 994
TspDTI ATGAA 4 cut(s) 71, 471, 1027, 1264
TspGWI ACGGA 1 cut(s) 524
TspRI CASTG 2 cut(s) 51, 199
VpaK11BI GGWCC 3 cut(s) 198, 235, 857
XapI RAATTY 2 cut(s) 850, 1020
XceI RCATGY 1 cut(s) 1352
XcmI CCANNNNNNNNNTGG 1 cut(s) 245
XspI CTAG 3 cut(s) 746, 978, 1008
ZrmI AGTACT 1 cut(s) 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.