Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007162

Physical Location & Seq

Genomic Coordinates Forward (+)

6872110 .. 6874025

Gene Structure 1916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1098200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGGGCACTACCCTGAATGGGATGAGGATCACCCTCTTCACTTTGTCGGCCATTCTGCCGGAGCACAGGTTGTCCGTGTGCTGCAGCAAATGCTTGCTGATAAGGCGTTCAAGGGGTTTGAGAACACAAATGAGAATTGGGTATTGAGCATATCATCATTGTCAGGAGCATTCAATGGAACAACAAGAACCTACTTGGATGGAATGCAGCCAGAAGATGGAAAAACCTTGAAACCTATATGTCTGTTGCAGTTATGCCGGCTAGGAGTGATAATTTACGATTGGTTGGACATTCCCTGGCTGAAGGCTTATTACAACTTTGGGTTTGATCACTATAACATGACATGGAAGAAAGTGGGCGTTAGGGGTCTTGTTGATTGCCTCTTGGGAAACTCAGGCCCATTCGCTTCTACTGATTGGATTCTCCCAGACCTCACACTTCAAGGCTCCGCAAGACTCAACAGCCATCTCCATTCCTTTCCCAACACATACTACTTCAGCTATGCCACTAAGCGAACGAGGAAGGTGTTGGGTGTCACAGTTCCATCAAGCATATGCGGAATTCATCCATTGCTTTTCATTAGAGTATTGCAAATGAGCCAATGGCGCCACCCTCCGGATGTCCCTCCCCCATACAAAGGCTATAGGGATGAGGATTGGCAGGACAATGATGGAGCTTTGAATACCATCTCCATGACTCGCCCTCTTCTCCCCGTTGAACATCCCAGTCGGTTTGTAAAAGATGATTCAGATTGTCATCCTTTGCAACCTGGCATCTGGTTAGTACAAACACTTCTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

30.42

Weight (kDa)

6.24

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10740 AT1G10740 AT1G10740 AT1G10740 AT1G23330 AT1G23330
fragaria_vesca	FvH4_4g25830
malus_domestica	MD13G1097200.v1.1 MD16G1098200.v1.1
prunus_persica	Prupe.1G248400_v2.0.a1
pyrus_communis	pycom13g08490 pycom16g08360
rosa_chinensis	RchiOBHm_Chr4g0433281
rosa_laevigata	RLG00000006767
rosa_multiflora	Rmu_sc0000354.1_g000003 Rmu_sc0001516.1_g000076 Rmu_sc0002512.1_g000003
rosa_roxburghii	Rroxscaffold_5G00374840
rosa_rugosa	Rorug04G0267700
rosa_samantha	Rh4AG322200 Rh4BG329600 Rh4CG344900 Rh4DG326300
rosa_wichuraiana	Rw2G008570 Rw4G027880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	606
AccB7I	CCANNNNNTGG	1 cut(s)	218
AccIII	TCCGGA	1 cut(s)	616
AciI	CCGC	2 cut(s)	450, 558
AclWI	GGATC	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	561
AcuI	CTGAAG	2 cut(s)	323, 481
AcyI	GRCGYC	1 cut(s)	607
AfaI	GTAC	1 cut(s)	786
AfiI	CCNNNNNNNGG	4 cut(s)	19, 218, 616, 638
AgsI	TTSAA	6 cut(s)	112, 175, 232, 443, 682, 719
AjnI	CCWGG	2 cut(s)	296, 769
AluBI	AGCT	2 cut(s)	501, 677
AluI	AGCT	2 cut(s)	501, 677
Alw21I	GWGCWC	1 cut(s)	67
AlwI	GGATC	1 cut(s)	36
Aor13HI	TCCGGA	1 cut(s)	616
AoxI	GGCC	2 cut(s)	49, 397
ApeKI	GCWGC	3 cut(s)	82, 85, 208
ApoI	RAATTY	1 cut(s)	561
AspLEI	GCGC	1 cut(s)	609
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	606
BarI	GAAGNNNNNNTAC	3 cut(s)	296, 328, 777
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	3 cut(s)	69, 97, 220
BccI	CCATC	6 cut(s)	194, 212, 474, 553, 665, 695
BciT130I	CCWGG	2 cut(s)	298, 771
BclI	TGATCA	1 cut(s)	328
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	2 cut(s)	83, 643
BfoI	RGCGCY	1 cut(s)	610
BisI	GCNGC	3 cut(s)	83, 86, 209
BlsI	GCNGC	3 cut(s)	84, 87, 210
Bme1390I	CCNGG	2 cut(s)	298, 771
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	2 cut(s)	448, 608
BmrFI	CCNGG	2 cut(s)	298, 771
BmrI	ACTGGG	1 cut(s)	720
BmsI	GCATC	1 cut(s)	783
BmuI	ACTGGG	1 cut(s)	720
BsaBI	GATNNNNATC	2 cut(s)	27, 756
BsaHI	GRCGYC	1 cut(s)	607
BsaJI	CCNNGG	1 cut(s)	296
BsaWI	WCCGGW	1 cut(s)	616
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 218, 616, 638
Bse118I	RCCGGY	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	726
Bse3DI	GCAATG	1 cut(s)	569
Bse8I	GATNNNNATC	2 cut(s)	27, 756
BseAI	TCCGGA	1 cut(s)	616
BseBI	CCWGG	2 cut(s)	298, 771
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	7 cut(s)	28, 205, 565, 625, 655, 721, 757
BseJI	GATNNNNATC	2 cut(s)	27, 756
BseLI	CCNNNNNNNGG	4 cut(s)	19, 218, 616, 638
BseMI	GCAATG	1 cut(s)	569
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	726
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	3 cut(s)	69, 97, 220
BshFI	GGCC	2 cut(s)	51, 399
BshNI	GGYRCC	1 cut(s)	606
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	3 cut(s)	60, 259, 617
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	4 cut(s)	19, 218, 616, 638
BsmFI	GGGAC	1 cut(s)	608
BsmI	GAATGC	2 cut(s)	170, 210
BsnI	GGCC	2 cut(s)	51, 399
Bsp1286I	GDGCHC	2 cut(s)	9, 67
Bsp13I	TCCGGA	1 cut(s)	616
Bsp143I	GATC	2 cut(s)	28, 328
BspACI	CCGC	2 cut(s)	450, 558
BspANI	GGCC	2 cut(s)	51, 399
BspCNI	CTCAG	1 cut(s)	407
BspEI	TCCGGA	1 cut(s)	616
BspLI	GGNNCC	2 cut(s)	448, 608
BspMAI	CTGCAG	1 cut(s)	87
BspPI	GGATC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	606
BsrDI	GCAATG	1 cut(s)	569
BsrFI	RCCGGY	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	726
BssAI	RCCGGY	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	2 cut(s)	28, 328
BssNI	GRCGYC	1 cut(s)	607
Bst2UI	CCWGG	2 cut(s)	298, 771
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	2 cut(s)	42, 711
BstACI	GRCGYC	1 cut(s)	607
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	96, 260
BstDEI	CTNAG	2 cut(s)	394, 510
BstF5I	GGATG	7 cut(s)	28, 205, 565, 625, 655, 721, 757
BstH2I	RGCGCY	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	609
BstKTI	GATC	2 cut(s)	31, 331
BstMBI	GATC	2 cut(s)	28, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 104, 606
BstNI	CCWGG	2 cut(s)	298, 771
BstSCI	CCNGG	2 cut(s)	296, 769
BstSFI	CTRYAG	2 cut(s)	83, 643
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	3 cut(s)	69, 97, 220
BsuRI	GGCC	2 cut(s)	51, 399
BtsCI	GGATG	7 cut(s)	28, 205, 565, 625, 655, 721, 757
Cac8I	GCNNGC	2 cut(s)	96, 260
CfoI	GCGC	1 cut(s)	609
Cfr10I	RCCGGY	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	398
Csp6I	GTAC	1 cut(s)	785
CviAII	CATG	3 cut(s)	340, 345, 694
CviQI	GTAC	1 cut(s)	785
DdeI	CTNAG	2 cut(s)	394, 510
DinI	GGCGCC	1 cut(s)	608
DpnI	GATC	2 cut(s)	30, 330
DpnII	GATC	2 cut(s)	28, 328
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	42, 711
EarI	CTCTTC	2 cut(s)	42, 711
Eco57I	CTGAAG	2 cut(s)	323, 481
EcoRI	GAATTC	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	296, 769
EgeI	GGCGCC	1 cut(s)	608
EheI	GGCGCC	1 cut(s)	608
FaeI	CATG	3 cut(s)	343, 348, 697
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	3 cut(s)	339, 344, 693
FauNDI	CATATG	1 cut(s)	554
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	83, 86, 209
FokI	GGATG	7 cut(s)	35, 212, 552, 632, 662, 708, 744
Fsp4HI	GCNGC	3 cut(s)	83, 86, 209
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	608
GluI	GCNGC	3 cut(s)	83, 86, 209
HaeII	RGCGCY	1 cut(s)	610
HaeIII	GGCC	2 cut(s)	51, 399
HapII	CCGG	3 cut(s)	60, 259, 617
HhaI	GCGC	1 cut(s)	609
Hin1I	GRCGYC	1 cut(s)	607
Hin1II	CATG	3 cut(s)	343, 348, 697
Hin6I	GCGC	1 cut(s)	607
HinP1I	GCGC	1 cut(s)	607
HinfI	GANTC	4 cut(s)	421, 456, 697, 746
HpaII	CCGG	3 cut(s)	60, 259, 617
HphI	GGTGA	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	751
Hpy188III	TCNNGA	3 cut(s)	165, 617, 797
HpyAV	CCTTC	2 cut(s)	298, 517
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4V	TGCA	5 cut(s)	85, 208, 250, 592, 766
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 104, 606
HpyF3I	CTNAG	2 cut(s)	394, 510
Hsp92I	GRCGYC	1 cut(s)	607
Hsp92II	CATG	3 cut(s)	343, 348, 697
HspAI	GCGC	1 cut(s)	607
KasI	GGCGCC	1 cut(s)	606
Kpn2I	TCCGGA	1 cut(s)	616
KroI	GCCGGC	1 cut(s)	258
KroNI	GCCGGC	1 cut(s)	260
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	28, 328
LmnI	GCTCC	4 cut(s)	62, 167, 452, 674
Lsp1109I	GCAGC	3 cut(s)	69, 97, 220
LweI	GCATC	1 cut(s)	783
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	2 cut(s)	30, 330
MboI	GATC	2 cut(s)	28, 328
MboII	GAAGA	4 cut(s)	29, 227, 361, 698
MhlI	GDGCHC	2 cut(s)	9, 67
MluCI	AATT	3 cut(s)	136, 273, 561
Mly113I	GGCGCC	1 cut(s)	607
MlyI	GAGTC	2 cut(s)	450, 691
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	9 cut(s)	19, 45, 392, 443, 513, 624, 636, 646, 714
MroI	TCCGGA	1 cut(s)	616
MroNI	GCCGGC	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	692
MspI	CCGG	3 cut(s)	60, 259, 617
MspR9I	CCNGG	2 cut(s)	298, 771
Mva1269I	GAATGC	2 cut(s)	170, 210
MvaI	CCWGG	2 cut(s)	298, 771
MwoI	GCNNNNNNNGC	3 cut(s)	91, 104, 606
NaeI	GCCGGC	1 cut(s)	260
NarI	GGCGCC	1 cut(s)	607
NdeI	CATATG	1 cut(s)	554
NdeII	GATC	2 cut(s)	28, 328
NgoMIV	GCCGGC	1 cut(s)	258
NlaIII	CATG	3 cut(s)	343, 348, 697
NlaIV	GGNNCC	2 cut(s)	448, 608
NmuCI	GTSAC	1 cut(s)	535
PctI	GAATGC	2 cut(s)	170, 210
PdiI	GCCGGC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	421, 746
PflMI	CCANNNNNTGG	1 cut(s)	218
PkrI	GCNGC	3 cut(s)	84, 87, 210
PleI	GAGTC	2 cut(s)	450, 691
PluTI	GGCGCC	1 cut(s)	610
PpsI	GAGTC	2 cut(s)	450, 691
Psp6I	CCWGG	2 cut(s)	296, 769
PspGI	CCWGG	2 cut(s)	296, 769
PspN4I	GGNNCC	2 cut(s)	448, 608
PspPI	GGNCC	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	87
RsaI	GTAC	1 cut(s)	786
RsaNI	GTAC	1 cut(s)	785
RseI	CAYNNNNRTG	1 cut(s)	692
SatI	GCNGC	3 cut(s)	83, 86, 209
Sau3AI	GATC	2 cut(s)	28, 328
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	2 cut(s)	450, 691
ScrFI	CCNGG	2 cut(s)	298, 771
SduI	GDGCHC	2 cut(s)	9, 67
SetI	ASST	9 cut(s)	72, 194, 230, 238, 435, 503, 528, 679, 772
SfaNI	GCATC	1 cut(s)	783
SfcI	CTRYAG	2 cut(s)	83, 643
SfoI	GGCGCC	1 cut(s)	608
SmiMI	CAYNNNNRTG	1 cut(s)	692
Sse9I	AATT	3 cut(s)	136, 273, 561
SsiI	CCGC	2 cut(s)	450, 558
SspDI	GGCGCC	1 cut(s)	606
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	2 cut(s)	296, 769
TaaI	ACNGT	1 cut(s)	541
TaqI	TCGA	1 cut(s)	798
TasI	AATT	3 cut(s)	136, 273, 561
TatI	WGTACW	1 cut(s)	784
TfiI	GAWTC	2 cut(s)	421, 746
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	3 cut(s)	82, 85, 208
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	2 cut(s)	554, 568
TspGWI	ACGGA	1 cut(s)	65
Van91I	CCANNNNNTGG	1 cut(s)	218
XapI	RAATTY	1 cut(s)	561
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.