Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007162

Physical Location & Seq

Genomic Coordinates Reverse (-)

26095317 .. 26098747

Gene Structure 3431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G248400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGTTTTCCAGTTTGGACAAAATGATTAGATTATGGATAGCTGCACTGCAGTTTTCGGAGCTGATTGTGAGCAGTATCGTTCATATGCTATATGGGTTTTACATATTCAGCACAGCTGTGGCTGGTGATCTATCGCAGGCTTTGAATGAATTGCTCTCTAAGCCTAACATGAACATTGAGGTGAAAGAGGAGGTGGTGCCTAGAGACACATCAACCAATGAAATTCTACCTCCTATAGTTTTGGTTCATGGAATATTTGGATTTGGCAAAGGGAGATTGGGAGCTTTATCGTATTTCGCCGGGGCAGAGAAGAAAGACGAAAGGGTTCTCGTGCCTGATTTGGGATCTCTAACCAGCATTTATGATAGGGCTCGTGAATTGTTCTATTATTTGAAGGGTGGGAGAGTCGATTATGGTGAAGAACACAGCAAGGCTTGTGGGCATTCACAGTTCGGTCGTCTTTATGAACAAGGGCACTACCCTGAATGGGATGAGGATCATCCTATTCACTTTGTTGGGCATTCCGCCGGAGCACAGGTCGTTCGTGTGTTGCAGCAAATGCTTGCTGATAAGGCTTTCAAGGGGTATGAGAGCACCAATGAGAATTGGGTATTAAGCTTAACATCATTGTCGGGAGCATTCAATGGGACAACAAGAACCTACTTGGATGGGATGCAGCCAGAAGATGGAAGAACCATGAAACCTATATGTCTGCTGCAGTTATGCCGCATAGGAGTGATCATTTATGATTGGCTTGACATTCCCTGGCTGAAGGCTTATTACAACTTTGGGTTTGATCACTTTCACATCTCATGGAAGAAAGTGGGTGTTTGGGGTCTTGTTGATTGCCTGTTGGGAAACTCAGGCCCGTTCGCATCCGATGATTGGATCCTCCCGGACCTTACAATTCAAGGGTCTTTAAGGCTCAACAGCCATCTGCATTCCTTTCCCAACACATACTACTTCAGCTATGCCACTAAGCGCACAAAGAAGATATTGGGTGTCACAGTACCGTCTAGCATATTTGGAATTCACCCCTTGCTCTTCATTAGAGTATTGCAGATGAGCCAATGGCGTCACCCTCCTGATGTCTCTTCCCCATATAAAGGCTACAGGGATGAGGATTGGCAGGACAATGACGGAGCTCTCAATACCATCTCCATGACTTACCCTCTTATACCAGTTGAACACCCGAGCCGTTTCATGAAAGATGATTCAGATTGCCACCCCTTGCAACCAGGCATCTGGTACTACAAGATTGTGGAAGCTGATCACATATTCTTCATTGTGAATAGAGAGAGAGCAGGAGTTCAATTTGATCTGATATATGACAGCATTTTTGAACGATGCAGAAAGCATGTATTTAGAAAAACTCCACAGACTTTACCAAACGAAACTCACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

469

Amino Acids

53.6

Weight (kDa)

6.2

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10740 AT1G10740 AT1G10740 AT1G10740 AT1G23330 AT1G23330
fragaria_vesca	FvH4_4g25830
malus_domestica	MD13G1097200.v1.1 MD16G1098200.v1.1
prunus_persica	Prupe.1G248400_v2.0.a1
pyrus_communis	pycom13g08490 pycom16g08360
rosa_chinensis	RchiOBHm_Chr4g0433281
rosa_laevigata	RLG00000006767
rosa_multiflora	Rmu_sc0000354.1_g000003 Rmu_sc0001516.1_g000076 Rmu_sc0002512.1_g000003
rosa_roxburghii	Rroxscaffold_5G00374840
rosa_rugosa	Rorug04G0267700
rosa_samantha	Rh4AG322200 Rh4BG329600 Rh4CG344900 Rh4DG326300
rosa_wichuraiana	Rw2G008570 Rw4G027880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccB7I	CCANNNNNTGG	1 cut(s)	686
AciI	CCGC	2 cut(s)	525, 727
AclWI	GGATC	4 cut(s)	352, 504, 883, 896
AcsI	RAATTY	2 cut(s)	222, 1029
AcuI	CTGAAG	2 cut(s)	791, 949
AcyI	GRCGYC	1 cut(s)	1075
AfaI	GTAC	2 cut(s)	1011, 1250
AfiI	CCNNNNNNNGG	5 cut(s)	341, 487, 686, 885, 1106
AgsI	TTSAA	8 cut(s)	145, 394, 580, 643, 911, 1187, 1313, 1343
AjnI	CCWGG	2 cut(s)	764, 1237
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	8 cut(s)	41, 61, 116, 284, 618, 969, 1145, 1268
AluI	AGCT	8 cut(s)	41, 61, 116, 284, 618, 969, 1145, 1268
Alw21I	GWGCWC	3 cut(s)	535, 596, 1147
Alw26I	GTCTC	2 cut(s)	198, 1096
AlwI	GGATC	4 cut(s)	352, 504, 883, 896
Ama87I	CYCGRG	1 cut(s)	1192
AoxI	GGCC	1 cut(s)	865
ApeKI	GCWGC	4 cut(s)	41, 553, 676, 715
ApoI	RAATTY	2 cut(s)	222, 1029
ArsI	GACNNNNNNTTYG	2 cut(s)	1322, 1354
Asp700I	GAANNNNTTC	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	984
AspS9I	GGNCC	2 cut(s)	866, 898
AsuC2I	CCSGG	2 cut(s)	301, 896
AsuHPI	GGTGA	6 cut(s)	137, 193, 428, 1025, 1070, 1391
AvaI	CYCGRG	1 cut(s)	1192
AvaII	GGWCC	1 cut(s)	898
BaeGI	GKGCMC	1 cut(s)	477
BamHI	GGATCC	1 cut(s)	888
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	2 cut(s)	373, 1147
BarI	GAAGNNNNNNTAC	2 cut(s)	764, 796
BauI	CACGAG	2 cut(s)	329, 372
Bbv12I	GWGCWC	3 cut(s)	535, 596, 1147
BbvI	GCAGC	4 cut(s)	28, 565, 688, 702
BccI	CCATC	4 cut(s)	662, 680, 942, 1163
BceAI	ACGGC	1 cut(s)	1182
BciT130I	CCWGG	2 cut(s)	766, 1239
BclI	TGATCA	3 cut(s)	738, 796, 1270
BcnI	CCSGG	2 cut(s)	301, 896
BcoDI	GTCTC	2 cut(s)	198, 1096
BfaI	CTAG	2 cut(s)	201, 1017
BfmI	CTRYAG	4 cut(s)	47, 234, 716, 1111
BisI	GCNGC	5 cut(s)	42, 554, 677, 716, 727
BlsI	GCNGC	5 cut(s)	43, 555, 678, 717, 728
Bme1390I	CCNGG	4 cut(s)	301, 766, 896, 1239
Bme18I	GGWCC	1 cut(s)	898
BmeT110I	CYCGRG	1 cut(s)	1192
BmgT120I	GGNCC	2 cut(s)	866, 898
BmiI	GGNNCC	2 cut(s)	198, 890
BmrFI	CCNGG	4 cut(s)	301, 766, 896, 1239
BmsI	GCATC	4 cut(s)	663, 884, 1251, 1337
BpuMI	CCSGG	2 cut(s)	301, 896
BsaBI	GATNNNNATC	1 cut(s)	495
BsaHI	GRCGYC	1 cut(s)	1075
BsaJI	CCNNGG	2 cut(s)	300, 764
BsaXI	ACNNNNNCTCC	2 cut(s)	522, 552
Bsc4I	CCNNNNNNNGG	5 cut(s)	341, 487, 686, 885, 1106
Bse1I	ACTGG	2 cut(s)	9, 1181
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	766, 1239
BseDI	CCNNGG	2 cut(s)	300, 764
BseGI	GGATG	6 cut(s)	496, 499, 673, 678, 875, 1123
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	5 cut(s)	341, 487, 686, 885, 1106
BseMII	CTCAG	1 cut(s)	876
BseNI	ACTGG	2 cut(s)	9, 1181
BseRI	GAGGAG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	4 cut(s)	28, 565, 688, 702
BsgI	GTGCAG	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	457
BshFI	GGCC	1 cut(s)	867
BshNI	GGYRCC	1 cut(s)	196
BsiEI	CGRYCG	1 cut(s)	457
BsiHKAI	GWGCWC	3 cut(s)	535, 596, 1147
BsiHKCI	CYCGRG	1 cut(s)	1192
BsiSI	CCGG	3 cut(s)	300, 528, 896
BslFI	GGGAC	1 cut(s)	661
BslI	CCNNNNNNNGG	5 cut(s)	341, 487, 686, 885, 1106
BsmAI	GTCTC	2 cut(s)	198, 1096
BsmFI	GGGAC	1 cut(s)	661
BsmI	GAATGC	4 cut(s)	442, 520, 638, 940
BsnI	GGCC	1 cut(s)	867
BsoBI	CYCGRG	1 cut(s)	1192
Bsp1286I	GDGCHC	5 cut(s)	373, 477, 535, 596, 1147
Bsp143I	GATC	8 cut(s)	127, 344, 496, 738, 796, 888, 1270, 1318
BspACI	CCGC	2 cut(s)	525, 727
BspANI	GGCC	1 cut(s)	867
BspCNI	CTCAG	1 cut(s)	875
BspHI	TCATGA	1 cut(s)	1203
BspLI	GGNNCC	2 cut(s)	198, 890
BspMAI	CTGCAG	2 cut(s)	51, 720
BspPI	GGATC	4 cut(s)	352, 504, 883, 896
BspQI	GCTCTTC	1 cut(s)	1049
BspT107I	GGYRCC	1 cut(s)	196
BsrI	ACTGG	2 cut(s)	9, 1181
BssECI	CCNNGG	2 cut(s)	300, 764
BssMI	GATC	8 cut(s)	127, 344, 496, 738, 796, 888, 1270, 1318
BssNI	GRCGYC	1 cut(s)	1075
BssSI	CACGAG	2 cut(s)	329, 372
Bst2BI	CACGAG	2 cut(s)	329, 372
Bst2UI	CCWGG	2 cut(s)	766, 1239
Bst4CI	ACNGT	3 cut(s)	450, 1009, 1014
Bst6I	CTCTTC	2 cut(s)	1049, 1099
BstACI	GRCGYC	1 cut(s)	1075
BstAPI	GCANNNNNTGC	1 cut(s)	559
BstC8I	GCNNGC	2 cut(s)	138, 564
BstDEI	CTNAG	3 cut(s)	159, 862, 978
BstF5I	GGATG	6 cut(s)	496, 499, 673, 678, 875, 1123
BstHHI	GCGC	1 cut(s)	984
BstKTI	GATC	8 cut(s)	130, 347, 499, 741, 799, 891, 1273, 1321
BstMAI	GTCTC	2 cut(s)	198, 1096
BstMBI	GATC	8 cut(s)	127, 344, 496, 738, 796, 888, 1270, 1318
BstMCI	CGRYCG	1 cut(s)	457
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 559, 572
BstNI	CCWGG	2 cut(s)	766, 1239
BstNSI	RCATGY	1 cut(s)	1361
BstSCI	CCNGG	4 cut(s)	299, 764, 894, 1237
BstSFI	CTRYAG	4 cut(s)	47, 234, 716, 1111
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	4 cut(s)	28, 565, 688, 702
BstX2I	RGATCY	2 cut(s)	344, 888
BstXI	CCANNNNNNTGG	1 cut(s)	1245
BstYI	RGATCY	2 cut(s)	344, 888
BsuRI	GGCC	1 cut(s)	867
BtsCI	GGATG	6 cut(s)	496, 499, 673, 678, 875, 1123
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	2 cut(s)	138, 564
CciI	TCATGA	1 cut(s)	1203
CfoI	GCGC	1 cut(s)	984
Cfr13I	GGNCC	2 cut(s)	866, 898
CseI	GACGC	1 cut(s)	1064
Csp6I	GTAC	2 cut(s)	1010, 1249
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	7 cut(s)	169, 248, 697, 813, 1162, 1204, 1358
CviQI	GTAC	2 cut(s)	1010, 1249
DdeI	CTNAG	3 cut(s)	159, 862, 978
DpnI	GATC	8 cut(s)	129, 346, 498, 740, 798, 890, 1272, 1320
DpnII	GATC	8 cut(s)	127, 344, 496, 738, 796, 888, 1270, 1318
Eam1104I	CTCTTC	2 cut(s)	1049, 1099
EarI	CTCTTC	2 cut(s)	1049, 1099
EciI	GGCGGA	1 cut(s)	514
Ecl136II	GAGCTC	1 cut(s)	1145
Eco24I	GRGCYC	2 cut(s)	373, 1147
Eco47I	GGWCC	1 cut(s)	898
Eco53kI	GAGCTC	1 cut(s)	1145
Eco57I	CTGAAG	2 cut(s)	791, 949
Eco88I	CYCGRG	1 cut(s)	1192
EcoICRI	GAGCTC	1 cut(s)	1145
EcoRI	GAATTC	1 cut(s)	1029
EcoRII	CCWGG	2 cut(s)	764, 1237
EcoT38I	GRGCYC	2 cut(s)	373, 1147
FaeI	CATG	7 cut(s)	172, 251, 700, 816, 1165, 1207, 1361
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	7 cut(s)	168, 247, 696, 812, 1161, 1203, 1357
FauNDI	CATATG	1 cut(s)	84
FbaI	TGATCA	3 cut(s)	738, 796, 1270
Fnu4HI	GCNGC	5 cut(s)	42, 554, 677, 716, 727
FokI	GGATG	6 cut(s)	486, 503, 680, 685, 862, 1130
FriOI	GRGCYC	2 cut(s)	373, 1147
Fsp4HI	GCNGC	5 cut(s)	42, 554, 677, 716, 727
FspBI	CTAG	2 cut(s)	201, 1017
GlaI	GCGC	1 cut(s)	983
GluI	GCNGC	5 cut(s)	42, 554, 677, 716, 727
HaeIII	GGCC	1 cut(s)	867
HapII	CCGG	3 cut(s)	300, 528, 896
HgaI	GACGC	1 cut(s)	1064
HhaI	GCGC	1 cut(s)	984
Hin1I	GRCGYC	1 cut(s)	1075
Hin1II	CATG	7 cut(s)	172, 251, 700, 816, 1165, 1207, 1361
Hin6I	GCGC	1 cut(s)	982
HinP1I	GCGC	1 cut(s)	982
HindIII	AAGCTT	1 cut(s)	616
HinfI	GANTC	2 cut(s)	405, 1214
HpaII	CCGG	3 cut(s)	300, 528, 896
HphI	GGTGA	6 cut(s)	137, 193, 428, 1025, 1070, 1391
Hpy188I	TCNGA	4 cut(s)	58, 880, 1219, 1323
Hpy188III	TCNNGA	4 cut(s)	374, 633, 1085, 1204
HpyAV	CCTTC	2 cut(s)	388, 766
HpyCH4III	ACNGT	3 cut(s)	450, 1009, 1014
HpyCH4V	TGCA	9 cut(s)	44, 49, 553, 676, 718, 940, 1060, 1234, 1350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 559, 572
HpyF3I	CTNAG	3 cut(s)	159, 862, 978
Hsp92I	GRCGYC	1 cut(s)	1075
Hsp92II	CATG	7 cut(s)	172, 251, 700, 816, 1165, 1207, 1361
HspAI	GCGC	1 cut(s)	982
Ksp22I	TGATCA	3 cut(s)	738, 796, 1270
Kzo9I	GATC	8 cut(s)	127, 344, 496, 738, 796, 888, 1270, 1318
LguI	GCTCTTC	1 cut(s)	1049
LmnI	GCTCC	5 cut(s)	58, 281, 530, 635, 1142
Lsp1109I	GCAGC	4 cut(s)	28, 565, 688, 702
LweI	GCATC	4 cut(s)	663, 884, 1251, 1337
MaeI	CTAG	2 cut(s)	201, 1017
MaeIII	GTNAC	2 cut(s)	1003, 1076
MalI	GATC	8 cut(s)	129, 346, 498, 740, 798, 890, 1272, 1320
MboI	GATC	8 cut(s)	127, 344, 496, 738, 796, 888, 1270, 1318
MboII	GAAGA	9 cut(s)	322, 431, 695, 702, 829, 1003, 1036, 1086, 1273
MflI	RGATCY	2 cut(s)	344, 888
MhlI	GDGCHC	5 cut(s)	373, 477, 535, 596, 1147
MluCI	AATT	7 cut(s)	149, 222, 377, 604, 906, 1029, 1313
MlyI	GAGTC	1 cut(s)	414
MnlI	CCTC	9 cut(s)	172, 181, 184, 240, 487, 902, 1092, 1114, 1182
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	3 cut(s)	614, 620, 920
MslI	CAYNNNNRTG	4 cut(s)	116, 179, 734, 1160
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	3 cut(s)	300, 528, 896
MspR9I	CCNGG	4 cut(s)	301, 766, 896, 1239
Mva1269I	GAATGC	4 cut(s)	442, 520, 638, 940
MvaI	CCWGG	2 cut(s)	766, 1239
MwoI	GCNNNNNNNGC	3 cut(s)	160, 559, 572
NciI	CCSGG	2 cut(s)	301, 896
NdeI	CATATG	1 cut(s)	84
NdeII	GATC	8 cut(s)	127, 344, 496, 738, 796, 888, 1270, 1318
NlaIII	CATG	7 cut(s)	172, 251, 700, 816, 1165, 1207, 1361
NlaIV	GGNNCC	2 cut(s)	198, 890
NmuCI	GTSAC	2 cut(s)	1003, 1076
NspI	RCATGY	1 cut(s)	1361
OliI	CACNNNNGTG	1 cut(s)	116
PagI	TCATGA	1 cut(s)	1203
PciSI	GCTCTTC	1 cut(s)	1049
PctI	GAATGC	4 cut(s)	442, 520, 638, 940
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	1214
PflMI	CCANNNNNTGG	1 cut(s)	686
PfoI	TCCNGGA	1 cut(s)	894
PkrI	GCNGC	5 cut(s)	43, 555, 678, 717, 728
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	1147
Psp6I	CCWGG	2 cut(s)	764, 1237
PspGI	CCWGG	2 cut(s)	764, 1237
PspN4I	GGNNCC	2 cut(s)	198, 890
PspPI	GGNCC	2 cut(s)	866, 898
PstI	CTGCAG	2 cut(s)	51, 720
PsuI	RGATCY	2 cut(s)	344, 888
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	1011, 1250
RsaNI	GTAC	2 cut(s)	1010, 1249
RseI	CAYNNNNRTG	4 cut(s)	116, 179, 734, 1160
SacI	GAGCTC	1 cut(s)	1147
SapI	GCTCTTC	1 cut(s)	1049
SaqAI	TTAA	3 cut(s)	614, 620, 920
SatI	GCNGC	5 cut(s)	42, 554, 677, 716, 727
Sau3AI	GATC	8 cut(s)	127, 344, 496, 738, 796, 888, 1270, 1318
Sau96I	GGNCC	2 cut(s)	866, 898
SchI	GAGTC	1 cut(s)	414
ScrFI	CCNGG	4 cut(s)	301, 766, 896, 1239
SduI	GDGCHC	5 cut(s)	373, 477, 535, 596, 1147
SfaNI	GCATC	4 cut(s)	663, 884, 1251, 1337
SfcI	CTRYAG	4 cut(s)	47, 234, 716, 1111
SinI	GGWCC	1 cut(s)	898
SmiMI	CAYNNNNRTG	4 cut(s)	116, 179, 734, 1160
Sse9I	AATT	7 cut(s)	149, 222, 377, 604, 906, 1029, 1313
SsiI	CCGC	2 cut(s)	525, 727
SspI	AATATT	1 cut(s)	255
SspMI	CTAG	2 cut(s)	201, 1017
SstI	GAGCTC	1 cut(s)	1147
StyD4I	CCNGG	4 cut(s)	299, 764, 894, 1237
TaaI	ACNGT	3 cut(s)	450, 1009, 1014
TaqI	TCGA	1 cut(s)	408
TaqII	GACCGA	1 cut(s)	443
TasI	AATT	7 cut(s)	149, 222, 377, 604, 906, 1029, 1313
TauI	GCSGC	1 cut(s)	729
TfiI	GAWTC	1 cut(s)	1214
Tru1I	TTAA	3 cut(s)	614, 620, 920
Tru9I	TTAA	3 cut(s)	614, 620, 920
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	2 cut(s)	1003, 1076
TseI	GCWGC	4 cut(s)	41, 553, 676, 715
Tsp45I	GTSAC	2 cut(s)	1003, 1076
TspGWI	ACGGA	1 cut(s)	1155
TspRI	CASTG	1 cut(s)	51
Van91I	CCANNNNNTGG	1 cut(s)	686
VpaK11BI	GGWCC	1 cut(s)	898
XapI	RAATTY	2 cut(s)	222, 1029
XceI	RCATGY	1 cut(s)	1361
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	2 cut(s)	201, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.