RLG00000006767

palmitoyl-(protein) hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007162
Physical Location & Seq
Reverse (-)
10292643 .. 10296159
3517 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006767

Sequence Viewer

Length: 1170 bp
ATGTACGGTAGTGTGAGGAAGATGATCAGATTATGGATAGCCGCACTGCAATTTTCGGAGCTGTTTGTGAGCACCATGGTTCATTTGCTTTATGGGTTTTACATCTTCAGCTCCGCCGTCGCCGGTGACCTCTCGCTGGCCTTGAATGAGCTCTTGTGTAAGCCCAACAACGACACGAAAGAGTCGGTGCCCAGTGAGACCTCGGCCAATGGGGCTCTGCCTCCTATTGTTTTGGTCCATGGGATTTTTGGCTTTGGCAAAGGGAGGCTGGGAGGTTTGTCGTATTTCGCCGGAGCCGAGAAGAAAGACGAGAGGGTTCTGGTGCCGGATTTGGGATCTCTGACCAGCGTTTACGACAGGGCTCGTGAGTTGTTCTACTATTTGAAAGGTGGGCGGGTCGATTATGGTGAAGAACACAGCAAAGCCTGTGGGCATTCCCAGTTTGGCCGTCTTTACGAACAAGGGCACTACCCTGAATGGGATGAGGATCATCCTATTCACTTTGTGGGCCATTCCGCCGGAGCTCAGGTCGTCCGTGTTCTGCAGCAAATGCTTGCTGATAAGGCTTTCAAGGGGCATGAGAATACTAATGAGAATTGGGTATTGAGCATCACATCATTGTCCGGAGCGTTCAATGGGACTACAAGAACTTACTTGGATGGAATGCAGCCTGAGGATGGCAAAACCCTGAAGCCCATATGTCTGCTGCAACTATGTCGCATAGGAGTGATTATTTATGACTGGCTAGACATTTCCTGGCTAAAGGAATATTACAACTTTGGGTTTGATCACTATAATATCACATGGAAAAAAGTTGGTGTTTGGGGTCTCGTTGATTGCCTCTTGGGAAATTCAGGACCATTCGCTTCTGGGGATTGGATCCTCCCTGACCTTACAATTCAAGGTTCCATAAGACTCAACAGCCATCTACAGTCCTTTCCAAACACATACTACTTCAGCTATGCCACAAAGCGCACTAGGAAGATATGGGGTGTCACACTTCCTTCTAGCATATTCGGAATTCACCCTCTGCTTTTCATCAGAGTACTGCAGATGAGCCAATGGCGTCATCCGCCTGATGTCTCTCCCCCATATAAGGGTTACAGGTGTGTTTTCAACTGCACGTTATGCTATGGTTTGTTAGGCATCAATGTAAAGTGCAGAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

390

Amino Acids

43.87

Weight (kDa)

8.26

Isoelectric Point (pI)

32.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lip_C PF24708 75 - 187 3.9e-20 Lipase-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 187, 322
AccIII TCCGGA 1 cut(s) 623
AciI CCGC 5 cut(s) 42, 114, 394, 516, 1073
AclWI GGATC 4 cut(s) 343, 495, 874, 887
AcoI YGGCCR 2 cut(s) 204, 445
AcsI RAATTY 2 cut(s) 850, 1020
AcuI CTGAAG 3 cut(s) 91, 710, 940
AcyI GRCGYC 1 cut(s) 1066
AdeI CACNNNGTG 1 cut(s) 505
AfaI GTAC 2 cut(s) 5, 1047
AfiI CCNNNNNNNGG 6 cut(s) 136, 332, 478, 677, 1096, 1097
AgsI TTSAA 6 cut(s) 145, 385, 571, 634, 902, 1117
AjnI CCWGG 1 cut(s) 755
AluBI AGCT 5 cut(s) 61, 111, 151, 524, 960
AluI AGCT 5 cut(s) 61, 111, 151, 524, 960
Alw21I GWGCWC 3 cut(s) 74, 153, 526
Alw26I GTCTC 3 cut(s) 191, 833, 1087
AlwI GGATC 4 cut(s) 343, 495, 874, 887
Aor13HI TCCGGA 1 cut(s) 623
AoxI GGCC 4 cut(s) 138, 204, 445, 508
ApeKI GCWGC 3 cut(s) 544, 667, 706
ApoI RAATTY 2 cut(s) 850, 1020
AspLEI GCGC 1 cut(s) 975
AspS9I GGNCC 3 cut(s) 235, 508, 857
AsuHPI GGTGA 3 cut(s) 137, 419, 1016
AvaII GGWCC 2 cut(s) 235, 857
AxyI CCTNAGG 1 cut(s) 672
BaeGI GKGCMC 2 cut(s) 192, 468
BamHI GGATCC 1 cut(s) 879
BanI GGYRCC 2 cut(s) 187, 322
BanII GRGCYC 4 cut(s) 153, 217, 364, 526
BauI CACGAG 1 cut(s) 363
Bbv12I GWGCWC 3 cut(s) 74, 153, 526
BbvI GCAGC 3 cut(s) 556, 679, 693
BccI CCATC 3 cut(s) 653, 671, 933
BceAI ACGGC 2 cut(s) 101, 432
BcgI CGANNNNNNTGC 2 cut(s) 698, 732
BciT130I CCWGG 1 cut(s) 757
BclI TGATCA 2 cut(s) 24, 787
BcoDI GTCTC 3 cut(s) 191, 833, 1087
BfaI CTAG 3 cut(s) 746, 978, 1008
BfmI CTRYAG 3 cut(s) 542, 929, 1049
BglI GCCNNNNNGGC 1 cut(s) 212
BisI GCNGC 4 cut(s) 42, 545, 668, 707
BlsI GCNGC 4 cut(s) 43, 546, 669, 708
BmcAI AGTACT 1 cut(s) 1047
Bme1390I CCNGG 1 cut(s) 757
Bme18I GGWCC 2 cut(s) 235, 857
BmgT120I GGNCC 3 cut(s) 235, 508, 857
BmiI GGNNCC 5 cut(s) 189, 295, 324, 881, 907
BmrFI CCNGG 1 cut(s) 757
BmrI ACTGGG 2 cut(s) 186, 433
BmsI GCATC 2 cut(s) 618, 1155
BmuI ACTGGG 2 cut(s) 186, 433
Bpu10I CCTNAGC 1 cut(s) 525
BsaBI GATNNNNATC 1 cut(s) 486
BsaHI GRCGYC 1 cut(s) 1066
BsaI GGTCTC 2 cut(s) 191, 833
BsaJI CCNNGG 3 cut(s) 75, 201, 238
BsaWI WCCGGW 1 cut(s) 623
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 6 cut(s) 136, 332, 478, 677, 1096, 1097
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 3 cut(s) 192, 439, 746
Bse21I CCTNAGG 1 cut(s) 672
Bse8I GATNNNNATC 1 cut(s) 486
BseAI TCCGGA 1 cut(s) 623
BseBI CCWGG 1 cut(s) 757
BseDI CCNNGG 3 cut(s) 75, 201, 238
BseGI GGATG 5 cut(s) 487, 490, 664, 682, 1069
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 6 cut(s) 136, 332, 478, 677, 1096, 1097
BseMII CTCAG 2 cut(s) 539, 663
BseNI ACTGG 3 cut(s) 192, 439, 746
BseSI GKGCMC 2 cut(s) 192, 468
BseXI GCAGC 3 cut(s) 556, 679, 693
BseYI CCCAGC 1 cut(s) 268
BsgI GTGCAG 1 cut(s) 1105
BshFI GGCC 4 cut(s) 140, 206, 447, 510
BshNI GGYRCC 2 cut(s) 187, 322
BsiHKAI GWGCWC 3 cut(s) 74, 153, 526
BsiSI CCGG 5 cut(s) 123, 291, 326, 519, 624
BslFI GGGAC 1 cut(s) 652
BslI CCNNNNNNNGG 6 cut(s) 136, 332, 478, 677, 1096, 1097
BsmAI GTCTC 3 cut(s) 191, 833, 1087
BsmFI GGGAC 1 cut(s) 652
BsmI GAATGC 2 cut(s) 433, 669
BsnI GGCC 4 cut(s) 140, 206, 447, 510
Bso31I GGTCTC 2 cut(s) 191, 833
Bsp1286I GDGCHC 7 cut(s) 74, 153, 192, 217, 364, 468, 526
Bsp13I TCCGGA 1 cut(s) 623
Bsp143I GATC 5 cut(s) 24, 335, 487, 787, 879
Bsp19I CCATGG 2 cut(s) 75, 238
BspACI CCGC 5 cut(s) 42, 114, 394, 516, 1073
BspANI GGCC 4 cut(s) 140, 206, 447, 510
BspCNI CTCAG 2 cut(s) 538, 664
BspEI TCCGGA 1 cut(s) 623
BspLI GGNNCC 5 cut(s) 189, 295, 324, 881, 907
BspMAI CTGCAG 2 cut(s) 546, 1053
BspPI GGATC 4 cut(s) 343, 495, 874, 887
BspT107I GGYRCC 2 cut(s) 187, 322
BspTNI GGTCTC 2 cut(s) 191, 833
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 3 cut(s) 192, 439, 746
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 3 cut(s) 75, 201, 238
BssMI GATC 5 cut(s) 24, 335, 487, 787, 879
BssNI GRCGYC 1 cut(s) 1066
BssSI CACGAG 1 cut(s) 363
BssT1I CCWWGG 2 cut(s) 75, 238
Bst2BI CACGAG 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 757
Bst4CI ACNGT 2 cut(s) 8, 933
BstACI GRCGYC 1 cut(s) 1066
BstAPI GCANNNNNTGC 2 cut(s) 550, 1128
BstC8I GCNNGC 2 cut(s) 138, 555
BstDEI CTNAG 2 cut(s) 525, 672
BstDSI CCRYGG 2 cut(s) 75, 238
BstEII GGTNACC 1 cut(s) 125
BstF5I GGATG 5 cut(s) 487, 490, 664, 682, 1069
BstHHI GCGC 1 cut(s) 975
BstKTI GATC 5 cut(s) 27, 338, 490, 790, 882
BstMAI GTCTC 3 cut(s) 191, 833, 1087
BstMBI GATC 5 cut(s) 24, 335, 487, 787, 879
BstMWI GCNNNNNNNGC 5 cut(s) 212, 550, 563, 1072, 1128
BstNI CCWGG 1 cut(s) 757
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 755
BstSFI CTRYAG 3 cut(s) 542, 929, 1049
BstSLI GKGCMC 2 cut(s) 192, 468
BstV1I GCAGC 3 cut(s) 556, 679, 693
BstX2I RGATCY 2 cut(s) 335, 879
BstYI RGATCY 2 cut(s) 335, 879
Bsu36I CCTNAGG 1 cut(s) 672
BsuRI GGCC 4 cut(s) 140, 206, 447, 510
BtgI CCRYGG 2 cut(s) 75, 238
BtsCI GGATG 5 cut(s) 487, 490, 664, 682, 1069
BtsI GCAGTG 1 cut(s) 44
BtsIMutI CAGTG 2 cut(s) 44, 199
Cac8I GCNNGC 2 cut(s) 138, 555
CfoI GCGC 1 cut(s) 975
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 3 cut(s) 235, 508, 857
CseI GACGC 1 cut(s) 1055
Csp6I GTAC 2 cut(s) 4, 1046
CspCI CAANNNNNGTGG 2 cut(s) 409, 444
CviAII CATG 4 cut(s) 76, 239, 578, 804
CviQI GTAC 2 cut(s) 4, 1046
DdeI CTNAG 2 cut(s) 525, 672
DpnI GATC 5 cut(s) 26, 337, 489, 789, 881
DpnII GATC 5 cut(s) 24, 335, 487, 787, 879
DraIII CACNNNGTG 1 cut(s) 505
EaeI YGGCCR 2 cut(s) 204, 445
EciI GGCGGA 3 cut(s) 103, 505, 1062
Ecl136II GAGCTC 2 cut(s) 151, 524
Eco130I CCWWGG 2 cut(s) 75, 238
Eco24I GRGCYC 4 cut(s) 153, 217, 364, 526
Eco31I GGTCTC 2 cut(s) 191, 833
Eco47I GGWCC 2 cut(s) 235, 857
Eco53kI GAGCTC 2 cut(s) 151, 524
Eco57I CTGAAG 3 cut(s) 91, 710, 940
Eco81I CCTNAGG 1 cut(s) 672
Eco91I GGTNACC 1 cut(s) 125
EcoICRI GAGCTC 2 cut(s) 151, 524
EcoO65I GGTNACC 1 cut(s) 125
EcoRI GAATTC 1 cut(s) 1020
EcoRII CCWGG 1 cut(s) 755
EcoT14I CCWWGG 2 cut(s) 75, 238
EcoT38I GRGCYC 4 cut(s) 153, 217, 364, 526
ErhI CCWWGG 2 cut(s) 75, 238
FaeI CATG 4 cut(s) 79, 242, 581, 807
FaqI GGGAC 1 cut(s) 652
FatI CATG 4 cut(s) 75, 238, 577, 803
FauI CCCGC 1 cut(s) 387
FauNDI CATATG 1 cut(s) 698
FbaI TGATCA 2 cut(s) 24, 787
Fnu4HI GCNGC 4 cut(s) 42, 545, 668, 707
FokI GGATG 5 cut(s) 477, 494, 671, 689, 1056
FriOI GRGCYC 4 cut(s) 153, 217, 364, 526
Fsp4HI GCNGC 4 cut(s) 42, 545, 668, 707
FspBI CTAG 3 cut(s) 746, 978, 1008
GlaI GCGC 1 cut(s) 974
GluI GCNGC 4 cut(s) 42, 545, 668, 707
GsaI CCCAGC 1 cut(s) 272
HaeIII GGCC 4 cut(s) 140, 206, 447, 510
HapII CCGG 5 cut(s) 123, 291, 326, 519, 624
HgaI GACGC 1 cut(s) 1055
HhaI GCGC 1 cut(s) 975
Hin1I GRCGYC 1 cut(s) 1066
Hin1II CATG 4 cut(s) 79, 242, 581, 807
Hin6I GCGC 1 cut(s) 973
HinP1I GCGC 1 cut(s) 973
HinfI GANTC 2 cut(s) 182, 915
HpaII CCGG 5 cut(s) 123, 291, 326, 519, 624
HphI GGTGA 3 cut(s) 137, 419, 1016
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 5 cut(s) 29, 58, 342, 1019, 1043
Hpy188III TCNNGA 3 cut(s) 365, 624, 855
Hpy8I GTNNAC 1 cut(s) 352
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 1014
HpyCH4III ACNGT 2 cut(s) 8, 933
HpyCH4IV ACGT 1 cut(s) 1124
HpyCH4V TGCA 7 cut(s) 49, 544, 667, 709, 1051, 1122, 1161
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 550, 563, 1072, 1128
HpyF3I CTNAG 2 cut(s) 525, 672
HpySE526I ACGT 1 cut(s) 1124
Hsp92I GRCGYC 1 cut(s) 1066
Hsp92II CATG 4 cut(s) 79, 242, 581, 807
HspAI GCGC 1 cut(s) 973
Kpn2I TCCGGA 1 cut(s) 623
Ksp22I TGATCA 2 cut(s) 24, 787
Kzo9I GATC 5 cut(s) 24, 335, 487, 787, 879
LmnI GCTCC 5 cut(s) 58, 116, 293, 521, 626
Lsp1109I GCAGC 3 cut(s) 556, 679, 693
LweI GCATC 2 cut(s) 618, 1155
MaeI CTAG 3 cut(s) 746, 978, 1008
MaeII ACGT 1 cut(s) 1124
MaeIII GTNAC 3 cut(s) 125, 994, 1100
MalI GATC 5 cut(s) 26, 337, 489, 789, 881
MboI GATC 5 cut(s) 24, 335, 487, 787, 879
MboII GAAGA 5 cut(s) 31, 97, 313, 422, 994
MflI RGATCY 2 cut(s) 335, 879
MhlI GDGCHC 7 cut(s) 74, 153, 192, 217, 364, 468, 526
MluCI AATT 5 cut(s) 50, 595, 850, 897, 1020
MlyI GAGTC 2 cut(s) 191, 909
MroI TCCGGA 1 cut(s) 623
MslI CAYNNNNRTG 1 cut(s) 725
MspI CCGG 5 cut(s) 123, 291, 326, 519, 624
MspR9I CCNGG 1 cut(s) 757
Mva1269I GAATGC 2 cut(s) 433, 669
MvaI CCWGG 1 cut(s) 757
MwoI GCNNNNNNNGC 5 cut(s) 212, 550, 563, 1072, 1128
NcoI CCATGG 2 cut(s) 75, 238
NdeI CATATG 1 cut(s) 698
NdeII GATC 5 cut(s) 24, 335, 487, 787, 879
NlaIII CATG 4 cut(s) 79, 242, 581, 807
NlaIV GGNNCC 5 cut(s) 189, 295, 324, 881, 907
NmeAIII GCCGAG 2 cut(s) 182, 322
NmuCI GTSAC 2 cut(s) 125, 994
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PctI GAATGC 2 cut(s) 433, 669
PkrI GCNGC 4 cut(s) 43, 546, 669, 708
PleI GAGTC 2 cut(s) 190, 909
PpsI GAGTC 2 cut(s) 190, 909
Psp124BI GAGCTC 2 cut(s) 153, 526
Psp6I CCWGG 1 cut(s) 755
PspEI GGTNACC 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 268
PspGI CCWGG 1 cut(s) 755
PspN4I GGNNCC 5 cut(s) 189, 295, 324, 881, 907
PspPI GGNCC 3 cut(s) 235, 508, 857
PstI CTGCAG 2 cut(s) 546, 1053
PsuI RGATCY 2 cut(s) 335, 879
RsaI GTAC 2 cut(s) 5, 1047
RsaNI GTAC 2 cut(s) 4, 1046
RseI CAYNNNNRTG 1 cut(s) 725
SacI GAGCTC 2 cut(s) 153, 526
SatI GCNGC 4 cut(s) 42, 545, 668, 707
Sau3AI GATC 5 cut(s) 24, 335, 487, 787, 879
Sau96I GGNCC 3 cut(s) 235, 508, 857
ScaI AGTACT 1 cut(s) 1047
SchI GAGTC 2 cut(s) 191, 909
ScrFI CCNGG 1 cut(s) 757
SduI GDGCHC 7 cut(s) 74, 153, 192, 217, 364, 468, 526
SfaNI GCATC 2 cut(s) 618, 1155
SfcI CTRYAG 3 cut(s) 542, 929, 1049
SgrAI CRCCGGYG 1 cut(s) 122
SinI GGWCC 2 cut(s) 235, 857
SmiMI CAYNNNNRTG 1 cut(s) 725
Sse9I AATT 5 cut(s) 50, 595, 850, 897, 1020
SsiI CCGC 5 cut(s) 42, 114, 394, 516, 1073
SspI AATATT 1 cut(s) 770
SspMI CTAG 3 cut(s) 746, 978, 1008
SstI GAGCTC 2 cut(s) 153, 526
StyD4I CCNGG 1 cut(s) 755
StyI CCWWGG 2 cut(s) 75, 238
TaaI ACNGT 2 cut(s) 8, 933
TaiI ACGT 1 cut(s) 1127
TaqI TCGA 1 cut(s) 399
TasI AATT 5 cut(s) 50, 595, 850, 897, 1020
TatI WGTACW 1 cut(s) 1045
TauI GCSGC 1 cut(s) 44
TscAI CASTG 2 cut(s) 51, 199
TseFI GTSAC 2 cut(s) 125, 994
TseI GCWGC 3 cut(s) 544, 667, 706
Tsp45I GTSAC 2 cut(s) 125, 994
TspDTI ATGAA 2 cut(s) 71, 1027
TspGWI ACGGA 1 cut(s) 524
TspRI CASTG 2 cut(s) 51, 199
VpaK11BI GGWCC 2 cut(s) 235, 857
XapI RAATTY 2 cut(s) 850, 1020
XcmI CCANNNNNNNNNTGG 1 cut(s) 245
XspI CTAG 3 cut(s) 746, 978, 1008
ZrmI AGTACT 1 cut(s) 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.