FvH4_4g25830

palmitoyl-(protein) hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007162
Physical Location & Seq
Forward (+)
27490664 .. 27494294
3631 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25830.t1

Sequence Viewer

Length: 1416 bp
ATGTGCAGCAGTGTGAGGAAGATGATCAGATTATGGATTGCCGCACTGCAATTGTCGGAGCTGTTTGTCAGCTCTTTGGTTCATGTGCTTTATGGGTTTTACATCTTCAGCTCCGCCGTCGCCGGTGACCTCTCGCTGGCCTTGAATGAGCTTTTGTTTAAGCCCAATAACGTGAACAACGTGGAGTTGGTGCCTAGTGAGACATCGGTGGCGCCGGCGACGGCCAATGGGGATCTTCCTCCTATTGTTTTGGTTCATGGGATTTTTGGCTTTGGCAAAGGGAGGCTGGGAGGCCTGTCGTATTTCGCCGGAGCTGAGAAGAAAGACGAGAGGGTTCTGGTACCGGATTTGGGATCTCTGACGAGCGTTTACGACAGGGCTCGTGAGTTGTTCTACTATTTGAAAGGTGGGCGGGTCGATTATGGTGAGGAACACAGCAAAGCTTGTGGGCATTCCCGGTTTGGCCGTCTATATGAACAGGGTCACTACCCTGAATGGGACGAGGATCATCCTGTTCACTTTGTGGGCCATTCTGCCGGAGCTCAGGTCGTCCGTGTTCTCCAGCAAATGCTTGTTGATAAGGCTTTCGAGGGACATGAGAATACTAATGAGAATTGGGTATTGAGCATCACATCATTGTCTGGAGCGTTCAATGGGACTACAAGAACTTACTTGGATGGAATGCAGCCTGAGGATGGCAAAACCCTGAAGCCCATATGTCTGCTGCAACTATGTCGCATAGGAGTGATTATTTATGACTGGCTAGACATTTCTTGGCTGAAGGAATATTACAACTTTGGGTTTGATCACTACAATTTCACATGGAAGAAAGTCGGTGTTTGGGGTCTCATTGATTGCCTATTGGGAAATTCGGGACCATTCGCATCTGGCGATTGGATCCTCCCTGACCTTACAATTCAAGGTTCCATAAGACTCAACAGCCATCTACAGTCCTTCCCAAACACATACTACTTCAGCTATGCCACAAAGCGCACTAAGAAGATATGGGGTGTGACACTTCCCTCAACCATCTTCGGAATTCACCCTCTGCTTTTTATCAGAGTACTGCAGATGAGCCAATGGCGTCATCCTCCTGATGCCTCACCCCCGTATAAGGGATACAAAGATGAGGATTGGCAAGAAAATGATGGGGCTCTGAATACCATCTCCATGACTCACCCTCGTCTCCCTGTTGAGCACCCAAGCCGTTTTGTGAAAGATGATTCAGAGTGCCACCCCTTGCAACCAGGCATCTGGTACTACAAGATTGTGGAAGCTGATCACATATTCTTCATTGTGAATCGGGAGAGAGCAGGAGTTCAGTTTGATCTGATATATGACAGCATTTTTGAAAGGTGCAGAAAGCATGTATTTAGAAAAACTCCACCAACATTACCCAACCAAACTCAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

472

Amino Acids

53.61

Weight (kDa)

6.44

Isoelectric Point (pI)

35.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lip_C PF24708 81 - 334 6e-22 Lipase-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 340
AccB1I GGYRCC 3 cut(s) 190, 211, 340
AciI CCGC 3 cut(s) 42, 114, 412
AclWI GGATC 5 cut(s) 240, 361, 513, 892, 905
AcoI YGGCCR 2 cut(s) 222, 463
AcsI RAATTY 2 cut(s) 868, 1038
AcuI CTGAAG 4 cut(s) 91, 728, 800, 958
AcyI GRCGYC 2 cut(s) 212, 1084
AdeI CACNNNGTG 1 cut(s) 523
AfaI GTAC 3 cut(s) 342, 1065, 1259
AfiI CCNNNNNNNGG 6 cut(s) 136, 350, 496, 695, 1114, 1115
AgsI TTSAA 5 cut(s) 145, 403, 652, 920, 1352
AjnI CCWGG 1 cut(s) 1246
AluBI AGCT 9 cut(s) 61, 72, 111, 151, 314, 443, 542, 978, 1277
AluI AGCT 9 cut(s) 61, 72, 111, 151, 314, 443, 542, 978, 1277
Alw21I GWGCWC 2 cut(s) 544, 1200
Alw26I GTCTC 3 cut(s) 194, 851, 1190
AlwI GGATC 5 cut(s) 240, 361, 513, 892, 905
AoxI GGCC 5 cut(s) 138, 222, 292, 463, 526
ApeKI GCWGC 3 cut(s) 6, 685, 724
ApoI RAATTY 2 cut(s) 868, 1038
ArsI GACNNNNNNTTYG 2 cut(s) 1331, 1363
Asp718I GGTACC 1 cut(s) 340
AspLEI GCGC 2 cut(s) 214, 993
AspS9I GGNCC 2 cut(s) 526, 875
AsuC2I CCSGG 1 cut(s) 457
AsuHPI GGTGA 5 cut(s) 137, 437, 1034, 1095, 1169
AvaII GGWCC 1 cut(s) 875
AxyI CCTNAGG 1 cut(s) 690
BamHI GGATCC 1 cut(s) 897
BanI GGYRCC 3 cut(s) 190, 211, 340
BanII GRGCYC 3 cut(s) 382, 544, 1156
BarI GAAGNNNNNNTAC 2 cut(s) 773, 805
BauI CACGAG 1 cut(s) 381
Bbv12I GWGCWC 2 cut(s) 544, 1200
BbvI GCAGC 3 cut(s) 18, 697, 711
BccI CCATC 6 cut(s) 671, 689, 951, 1037, 1142, 1172
BceAI ACGGC 4 cut(s) 101, 237, 450, 1191
BcgI CGANNNNNNTGC 2 cut(s) 716, 750
BciT130I CCWGG 1 cut(s) 1248
BciVI GTATCC 1 cut(s) 1112
BclI TGATCA 3 cut(s) 24, 805, 1279
BcnI CCSGG 1 cut(s) 457
BcoDI GTCTC 3 cut(s) 194, 851, 1190
BfaI CTAG 2 cut(s) 195, 764
BfmI CTRYAG 2 cut(s) 947, 1067
BfoI RGCGCY 1 cut(s) 215
BfuI GTATCC 1 cut(s) 1112
BisI GCNGC 4 cut(s) 7, 42, 686, 725
BlsI GCNGC 4 cut(s) 8, 43, 687, 726
BmcAI AGTACT 1 cut(s) 1065
Bme1390I CCNGG 2 cut(s) 457, 1248
Bme18I GGWCC 1 cut(s) 875
BmgT120I GGNCC 2 cut(s) 526, 875
BmiI GGNNCC 6 cut(s) 192, 213, 342, 876, 899, 925
BmrFI CCNGG 2 cut(s) 457, 1248
BmsI GCATC 4 cut(s) 636, 893, 1087, 1260
BpmI CTGGAG 2 cut(s) 545, 663
Bpu10I CCTNAGC 1 cut(s) 543
BpuMI CCSGG 1 cut(s) 457
BsaHI GRCGYC 2 cut(s) 212, 1084
BsaI GGTCTC 1 cut(s) 851
BsaWI WCCGGW 1 cut(s) 343
BsaXI ACNNNNNCTCC 2 cut(s) 531, 561
Bsc4I CCNNNNNNNGG 6 cut(s) 136, 350, 496, 695, 1114, 1115
Bse118I RCCGGY 2 cut(s) 122, 214
Bse1I ACTGG 1 cut(s) 764
Bse21I CCTNAGG 1 cut(s) 690
BseBI CCWGG 1 cut(s) 1248
BseGI GGATG 4 cut(s) 508, 682, 700, 1087
BseLI CCNNNNNNNGG 6 cut(s) 136, 350, 496, 695, 1114, 1115
BseMII CTCAG 3 cut(s) 306, 557, 681
BseNI ACTGG 1 cut(s) 764
BseXI GCAGC 3 cut(s) 18, 697, 711
BseYI CCCAGC 1 cut(s) 286
BsgI GTGCAG 2 cut(s) 25, 1378
BshFI GGCC 5 cut(s) 140, 224, 294, 465, 528
BshNI GGYRCC 3 cut(s) 190, 211, 340
BsiHKAI GWGCWC 2 cut(s) 544, 1200
BsiSI CCGG 6 cut(s) 123, 215, 309, 344, 457, 537
BslFI GGGAC 4 cut(s) 512, 606, 670, 888
BslI CCNNNNNNNGG 6 cut(s) 136, 350, 496, 695, 1114, 1115
BsmAI GTCTC 3 cut(s) 194, 851, 1190
BsmBI CGTCTC 1 cut(s) 1190
BsmFI GGGAC 4 cut(s) 512, 606, 670, 888
BsmI GAATGC 2 cut(s) 451, 687
BsnI GGCC 5 cut(s) 140, 224, 294, 465, 528
Bso31I GGTCTC 1 cut(s) 851
Bsp1286I GDGCHC 4 cut(s) 382, 544, 1156, 1200
Bsp143I GATC 8 cut(s) 24, 232, 353, 505, 805, 897, 1279, 1327
BspACI CCGC 3 cut(s) 42, 114, 412
BspANI GGCC 5 cut(s) 140, 224, 294, 465, 528
BspCNI CTCAG 3 cut(s) 307, 556, 682
BspLI GGNNCC 6 cut(s) 192, 213, 342, 876, 899, 925
BspMAI CTGCAG 1 cut(s) 1071
BspPI GGATC 5 cut(s) 240, 361, 513, 892, 905
BspT107I GGYRCC 3 cut(s) 190, 211, 340
BspTNI GGTCTC 1 cut(s) 851
BsrFI RCCGGY 2 cut(s) 122, 214
BsrI ACTGG 1 cut(s) 764
BssAI RCCGGY 2 cut(s) 122, 214
BssMI GATC 8 cut(s) 24, 232, 353, 505, 805, 897, 1279, 1327
BssNI GRCGYC 2 cut(s) 212, 1084
BssSI CACGAG 1 cut(s) 381
Bst2BI CACGAG 1 cut(s) 381
Bst2UI CCWGG 1 cut(s) 1248
Bst4CI ACNGT 1 cut(s) 951
BstACI GRCGYC 2 cut(s) 212, 1084
BstC8I GCNNGC 2 cut(s) 138, 216
BstDEI CTNAG 4 cut(s) 315, 543, 690, 996
BstEII GGTNACC 1 cut(s) 125
BstF5I GGATG 4 cut(s) 508, 682, 700, 1087
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 2 cut(s) 214, 993
BstKTI GATC 8 cut(s) 27, 235, 356, 508, 808, 900, 1282, 1330
BstMAI GTCTC 3 cut(s) 194, 851, 1190
BstMBI GATC 8 cut(s) 24, 232, 353, 505, 805, 897, 1279, 1327
BstNI CCWGG 1 cut(s) 1248
BstNSI RCATGY 1 cut(s) 1370
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 455, 1246
BstSFI CTRYAG 2 cut(s) 947, 1067
BstV1I GCAGC 3 cut(s) 18, 697, 711
BstX2I RGATCY 3 cut(s) 232, 353, 897
BstXI CCANNNNNNTGG 1 cut(s) 1254
BstYI RGATCY 3 cut(s) 232, 353, 897
Bsu36I CCTNAGG 1 cut(s) 690
BsuI GTATCC 1 cut(s) 1112
BsuRI GGCC 5 cut(s) 140, 224, 294, 465, 528
BtsCI GGATG 4 cut(s) 508, 682, 700, 1087
BtsI GCAGTG 2 cut(s) 16, 44
BtsIMutI CAGTG 2 cut(s) 16, 44
Cac8I GCNNGC 2 cut(s) 138, 216
CfoI GCGC 2 cut(s) 214, 993
Cfr10I RCCGGY 2 cut(s) 122, 214
Cfr13I GGNCC 2 cut(s) 526, 875
CseI GACGC 1 cut(s) 1073
Csp6I GTAC 3 cut(s) 341, 1064, 1258
CspCI CAANNNNNGTGG 2 cut(s) 427, 462
CviAII CATG 6 cut(s) 83, 257, 596, 822, 1171, 1367
CviQI GTAC 3 cut(s) 341, 1064, 1258
DdeI CTNAG 4 cut(s) 315, 543, 690, 996
DinI GGCGCC 1 cut(s) 213
DpnI GATC 8 cut(s) 26, 234, 355, 507, 807, 899, 1281, 1329
DpnII GATC 8 cut(s) 24, 232, 353, 505, 805, 897, 1279, 1327
DraIII CACNNNGTG 1 cut(s) 523
EaeI YGGCCR 2 cut(s) 222, 463
EciI GGCGGA 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 542
Eco147I AGGCCT 1 cut(s) 294
Eco24I GRGCYC 3 cut(s) 382, 544, 1156
Eco31I GGTCTC 1 cut(s) 851
Eco47I GGWCC 1 cut(s) 875
Eco53kI GAGCTC 1 cut(s) 542
Eco57I CTGAAG 4 cut(s) 91, 728, 800, 958
Eco81I CCTNAGG 1 cut(s) 690
Eco91I GGTNACC 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 542
EcoO65I GGTNACC 1 cut(s) 125
EcoRI GAATTC 1 cut(s) 1038
EcoRII CCWGG 1 cut(s) 1246
EcoT38I GRGCYC 3 cut(s) 382, 544, 1156
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
Esp3I CGTCTC 1 cut(s) 1190
FaeI CATG 6 cut(s) 86, 260, 599, 825, 1174, 1370
FaqI GGGAC 4 cut(s) 512, 606, 670, 888
FatI CATG 6 cut(s) 82, 256, 595, 821, 1170, 1366
FauI CCCGC 1 cut(s) 405
FauNDI CATATG 1 cut(s) 716
FbaI TGATCA 3 cut(s) 24, 805, 1279
Fnu4HI GCNGC 4 cut(s) 7, 42, 686, 725
FokI GGATG 4 cut(s) 495, 689, 707, 1074
FriOI GRGCYC 3 cut(s) 382, 544, 1156
Fsp4HI GCNGC 4 cut(s) 7, 42, 686, 725
FspBI CTAG 2 cut(s) 195, 764
GlaI GCGC 2 cut(s) 213, 992
GluI GCNGC 4 cut(s) 7, 42, 686, 725
GsaI CCCAGC 1 cut(s) 290
GsuI CTGGAG 2 cut(s) 545, 663
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 5 cut(s) 140, 224, 294, 465, 528
HapII CCGG 6 cut(s) 123, 215, 309, 344, 457, 537
HgaI GACGC 1 cut(s) 1073
HhaI GCGC 2 cut(s) 214, 993
Hin1I GRCGYC 2 cut(s) 212, 1084
Hin1II CATG 6 cut(s) 86, 260, 599, 825, 1174, 1370
Hin6I GCGC 2 cut(s) 212, 991
HinP1I GCGC 2 cut(s) 212, 991
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 4 cut(s) 933, 1174, 1223, 1300
HpaII CCGG 6 cut(s) 123, 215, 309, 344, 457, 537
HphI GGTGA 5 cut(s) 137, 437, 1034, 1095, 1169
Hpy166II GTNNAC 3 cut(s) 175, 370, 517
Hpy188I TCNGA 8 cut(s) 29, 58, 360, 1037, 1061, 1158, 1228, 1332
Hpy188III TCNNGA 5 cut(s) 383, 642, 873, 1094, 1304
Hpy8I GTNNAC 3 cut(s) 175, 370, 517
Hpy99I CGWCG 2 cut(s) 122, 223
HpyAV CCTTC 2 cut(s) 775, 964
HpyCH4III ACNGT 1 cut(s) 951
HpyCH4IV ACGT 2 cut(s) 171, 180
HpyCH4V TGCA 7 cut(s) 6, 49, 685, 727, 1069, 1243, 1359
HpyF3I CTNAG 4 cut(s) 315, 543, 690, 996
HpySE526I ACGT 2 cut(s) 171, 180
Hsp92I GRCGYC 2 cut(s) 212, 1084
Hsp92II CATG 6 cut(s) 86, 260, 599, 825, 1174, 1370
HspAI GCGC 2 cut(s) 212, 991
KasI GGCGCC 1 cut(s) 211
KpnI GGTACC 1 cut(s) 344
KroI GCCGGC 1 cut(s) 214
KroNI GCCGGC 1 cut(s) 216
Ksp22I TGATCA 3 cut(s) 24, 805, 1279
Kzo9I GATC 8 cut(s) 24, 232, 353, 505, 805, 897, 1279, 1327
LmnI GCTCC 5 cut(s) 58, 116, 311, 539, 644
Lsp1109I GCAGC 3 cut(s) 18, 697, 711
LweI GCATC 4 cut(s) 636, 893, 1087, 1260
MaeI CTAG 2 cut(s) 195, 764
MaeII ACGT 2 cut(s) 171, 180
MaeIII GTNAC 3 cut(s) 125, 482, 1012
MalI GATC 8 cut(s) 26, 234, 355, 507, 807, 899, 1281, 1329
MboI GATC 8 cut(s) 24, 232, 353, 505, 805, 897, 1279, 1327
MboII GAAGA 8 cut(s) 31, 97, 227, 331, 838, 1012, 1024, 1282
MfeI CAATTG 1 cut(s) 50
MflI RGATCY 3 cut(s) 232, 353, 897
MhlI GDGCHC 4 cut(s) 382, 544, 1156, 1200
MluCI AATT 6 cut(s) 50, 613, 814, 868, 915, 1038
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 2 cut(s) 927, 1168
MmeI TCCRAC 1 cut(s) 36
MreI CGCCGGCG 1 cut(s) 214
MroNI GCCGGC 1 cut(s) 214
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 2 cut(s) 743, 1169
MspI CCGG 6 cut(s) 123, 215, 309, 344, 457, 537
MspR9I CCNGG 2 cut(s) 457, 1248
MunI CAATTG 1 cut(s) 50
Mva1269I GAATGC 2 cut(s) 451, 687
MvaI CCWGG 1 cut(s) 1248
NaeI GCCGGC 1 cut(s) 216
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 1 cut(s) 457
NdeI CATATG 1 cut(s) 716
NdeII GATC 8 cut(s) 24, 232, 353, 505, 805, 897, 1279, 1327
NgoMIV GCCGGC 1 cut(s) 214
NlaIII CATG 6 cut(s) 86, 260, 599, 825, 1174, 1370
NlaIV GGNNCC 6 cut(s) 192, 213, 342, 876, 899, 925
NmuCI GTSAC 3 cut(s) 125, 482, 1012
NspI RCATGY 1 cut(s) 1370
PceI AGGCCT 1 cut(s) 294
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 888
PctI GAATGC 2 cut(s) 451, 687
PdiI GCCGGC 1 cut(s) 216
PfeI GAWTC 2 cut(s) 1223, 1300
PkrI GCNGC 4 cut(s) 8, 43, 687, 726
PleI GAGTC 2 cut(s) 927, 1168
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 2 cut(s) 927, 1168
Psp124BI GAGCTC 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 1246
PspEI GGTNACC 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 286
PspGI CCWGG 1 cut(s) 1246
PspN4I GGNNCC 6 cut(s) 192, 213, 342, 876, 899, 925
PspPI GGNCC 2 cut(s) 526, 875
PstI CTGCAG 1 cut(s) 1071
PsuI RGATCY 3 cut(s) 232, 353, 897
RsaI GTAC 3 cut(s) 342, 1065, 1259
RsaNI GTAC 3 cut(s) 341, 1064, 1258
RseI CAYNNNNRTG 2 cut(s) 743, 1169
SacI GAGCTC 1 cut(s) 544
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 4 cut(s) 7, 42, 686, 725
Sau3AI GATC 8 cut(s) 24, 232, 353, 505, 805, 897, 1279, 1327
Sau96I GGNCC 2 cut(s) 526, 875
ScaI AGTACT 1 cut(s) 1065
SchI GAGTC 2 cut(s) 927, 1168
ScrFI CCNGG 2 cut(s) 457, 1248
SduI GDGCHC 4 cut(s) 382, 544, 1156, 1200
SfaNI GCATC 4 cut(s) 636, 893, 1087, 1260
SfcI CTRYAG 2 cut(s) 947, 1067
SfoI GGCGCC 1 cut(s) 213
SgrAI CRCCGGYG 2 cut(s) 122, 214
SinI GGWCC 1 cut(s) 875
SmiMI CAYNNNNRTG 2 cut(s) 743, 1169
Sse9I AATT 6 cut(s) 50, 613, 814, 868, 915, 1038
SseBI AGGCCT 1 cut(s) 294
SsiI CCGC 3 cut(s) 42, 114, 412
SspDI GGCGCC 1 cut(s) 211
SspI AATATT 1 cut(s) 788
SspMI CTAG 2 cut(s) 195, 764
SstI GAGCTC 1 cut(s) 544
StuI AGGCCT 1 cut(s) 294
StyD4I CCNGG 2 cut(s) 455, 1246
TaaI ACNGT 1 cut(s) 951
TaiI ACGT 2 cut(s) 174, 183
TaqI TCGA 2 cut(s) 417, 588
TasI AATT 6 cut(s) 50, 613, 814, 868, 915, 1038
TatI WGTACW 1 cut(s) 1063
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 2 cut(s) 1223, 1300
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 2 cut(s) 16, 51
TseFI GTSAC 3 cut(s) 125, 482, 1012
TseI GCWGC 3 cut(s) 6, 685, 724
Tsp45I GTSAC 3 cut(s) 125, 482, 1012
TspDTI ATGAA 4 cut(s) 71, 245, 489, 1282
TspGWI ACGGA 1 cut(s) 542
TspRI CASTG 2 cut(s) 16, 51
VpaK11BI GGWCC 1 cut(s) 875
XapI RAATTY 2 cut(s) 868, 1038
XceI RCATGY 1 cut(s) 1370
XspI CTAG 2 cut(s) 195, 764
ZrmI AGTACT 1 cut(s) 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.