Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002512.1

Orthogroup ID

OG0007162

Physical Location & Seq

Genomic Coordinates Forward (+)

12206 .. 13316

Gene Structure 1111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002512.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgtacggtagtgtgaggaagatgatcagattatggatagccgcactgcaattttcggagctgtttgtgagcaccatggttcatttgctttatgggttttacatattcagctccgccgtcgccggtgacctctcgctggcattgaatgagctcttgtgtaagcccaacacggacaagaaagagtcggtgcccagtgggacctcggccaatggggctctgcctcctattgtgttggtccatgggatttttggctttggcaaagggaggctgggaggtttgtcgtatttcgccggagctgagaagaaagacgagagggttctggtgccggatttgggatctctgaccagcgtttacgacagggctcgtgagttgttctactatttgaaaggtgggcgggtcgattatggtgaagaacacagcaaagcctgtgggcattcccagtttggccgtctttatgaacaagggcactaccctgaatgggatgaggatcatcctattcactttgtgggccattccgccggagctcaggtcgtccgtgttctgcagcaaatgcttgctgataaggctttcaaggggtatgagaatactaatgagaattgggtattgagcatcacatcattgtccggagcgttcaatgggactacaagaacttacttggatggaatgcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

24.68

Weight (kDa)

6.44

Isoelectric Point (pI)

21.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10740 AT1G10740 AT1G10740 AT1G10740 AT1G23330 AT1G23330
fragaria_vesca	FvH4_4g25830
malus_domestica	MD13G1097200.v1.1 MD16G1098200.v1.1
prunus_persica	Prupe.1G248400_v2.0.a1
pyrus_communis	pycom13g08490 pycom16g08360
rosa_chinensis	RchiOBHm_Chr4g0433281
rosa_laevigata	RLG00000006767
rosa_multiflora	Rmu_sc0000354.1_g000003 Rmu_sc0001516.1_g000076 Rmu_sc0002512.1_g000003
rosa_roxburghii	Rroxscaffold_5G00374840
rosa_rugosa	Rorug04G0267700
rosa_samantha	Rh4AG322200 Rh4BG329600 Rh4CG344900 Rh4DG326300
rosa_wichuraiana	Rw2G008570 Rw4G027880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	187, 322
AccIII	TCCGGA	1 cut(s)	623
AciI	CCGC	4 cut(s)	42, 114, 394, 516
AclWI	GGATC	2 cut(s)	343, 495
AcoI	YGGCCR	2 cut(s)	204, 445
AdeI	CACNNNGTG	1 cut(s)	505
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	136, 332, 478
AgsI	TTSAA	4 cut(s)	145, 385, 571, 634
AluBI	AGCT	5 cut(s)	61, 111, 151, 296, 524
AluI	AGCT	5 cut(s)	61, 111, 151, 296, 524
Alw21I	GWGCWC	3 cut(s)	74, 153, 526
AlwI	GGATC	2 cut(s)	343, 495
Aor13HI	TCCGGA	1 cut(s)	623
AoxI	GGCC	3 cut(s)	204, 445, 508
ApeKI	GCWGC	1 cut(s)	544
AspS9I	GGNCC	3 cut(s)	198, 235, 508
AsuHPI	GGTGA	2 cut(s)	137, 419
AvaII	GGWCC	2 cut(s)	198, 235
BaeGI	GKGCMC	2 cut(s)	192, 468
BanI	GGYRCC	2 cut(s)	187, 322
BanII	GRGCYC	4 cut(s)	153, 217, 364, 526
BauI	CACGAG	1 cut(s)	363
Bbv12I	GWGCWC	3 cut(s)	74, 153, 526
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	1 cut(s)	653
BceAI	ACGGC	2 cut(s)	101, 432
BclI	TGATCA	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	542
BglI	GCCNNNNNGGC	1 cut(s)	212
BisI	GCNGC	2 cut(s)	42, 545
BlsI	GCNGC	2 cut(s)	43, 546
Bme18I	GGWCC	2 cut(s)	198, 235
BmgT120I	GGNCC	3 cut(s)	198, 235, 508
BmiI	GGNNCC	3 cut(s)	189, 199, 324
BmrI	ACTGGG	2 cut(s)	186, 433
BmsI	GCATC	1 cut(s)	618
BmuI	ACTGGG	2 cut(s)	186, 433
Bpu10I	CCTNAGC	1 cut(s)	525
BsaBI	GATNNNNATC	1 cut(s)	486
BsaJI	CCNNGG	3 cut(s)	75, 201, 238
BsaWI	WCCGGW	1 cut(s)	623
BsaXI	ACNNNNNCTCC	2 cut(s)	513, 543
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 332, 478
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	2 cut(s)	192, 439
Bse8I	GATNNNNATC	1 cut(s)	486
BseAI	TCCGGA	1 cut(s)	623
BseDI	CCNNGG	3 cut(s)	75, 201, 238
BseGI	GGATG	3 cut(s)	487, 490, 664
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	3 cut(s)	136, 332, 478
BseMII	CTCAG	2 cut(s)	288, 539
BseNI	ACTGG	2 cut(s)	192, 439
BseSI	GKGCMC	2 cut(s)	192, 468
BseXI	GCAGC	1 cut(s)	556
BseYI	CCCAGC	1 cut(s)	268
BshFI	GGCC	3 cut(s)	206, 447, 510
BshNI	GGYRCC	2 cut(s)	187, 322
BsiHKAI	GWGCWC	3 cut(s)	74, 153, 526
BsiSI	CCGG	5 cut(s)	123, 291, 326, 519, 624
BslFI	GGGAC	2 cut(s)	211, 652
BslI	CCNNNNNNNGG	3 cut(s)	136, 332, 478
BsmFI	GGGAC	2 cut(s)	211, 652
BsmI	GAATGC	2 cut(s)	433, 669
BsnI	GGCC	3 cut(s)	206, 447, 510
Bsp1286I	GDGCHC	7 cut(s)	74, 153, 192, 217, 364, 468, 526
Bsp13I	TCCGGA	1 cut(s)	623
Bsp143I	GATC	3 cut(s)	24, 335, 487
Bsp19I	CCATGG	2 cut(s)	75, 238
BspACI	CCGC	4 cut(s)	42, 114, 394, 516
BspANI	GGCC	3 cut(s)	206, 447, 510
BspCNI	CTCAG	2 cut(s)	289, 538
BspEI	TCCGGA	1 cut(s)	623
BspLI	GGNNCC	3 cut(s)	189, 199, 324
BspMAI	CTGCAG	1 cut(s)	546
BspPI	GGATC	2 cut(s)	343, 495
BspT107I	GGYRCC	2 cut(s)	187, 322
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	192, 439
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	3 cut(s)	75, 201, 238
BssMI	GATC	3 cut(s)	24, 335, 487
BssSI	CACGAG	1 cut(s)	363
BssT1I	CCWWGG	2 cut(s)	75, 238
Bst2BI	CACGAG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	550
BstC8I	GCNNGC	2 cut(s)	138, 555
BstDEI	CTNAG	2 cut(s)	297, 525
BstDSI	CCRYGG	2 cut(s)	75, 238
BstEII	GGTNACC	1 cut(s)	125
BstF5I	GGATG	3 cut(s)	487, 490, 664
BstKTI	GATC	3 cut(s)	27, 338, 490
BstMBI	GATC	3 cut(s)	24, 335, 487
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 550, 563
BstPI	GGTNACC	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	542
BstSLI	GKGCMC	2 cut(s)	192, 468
BstV1I	GCAGC	1 cut(s)	556
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BsuRI	GGCC	3 cut(s)	206, 447, 510
BtgI	CCRYGG	2 cut(s)	75, 238
BtsCI	GGATG	3 cut(s)	487, 490, 664
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	2 cut(s)	44, 199
Cac8I	GCNNGC	2 cut(s)	138, 555
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	3 cut(s)	198, 235, 508
Csp6I	GTAC	1 cut(s)	4
CspCI	CAANNNNNGTGG	2 cut(s)	409, 444
CviAII	CATG	2 cut(s)	76, 239
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	297, 525
DpnI	GATC	3 cut(s)	26, 337, 489
DpnII	GATC	3 cut(s)	24, 335, 487
DraIII	CACNNNGTG	1 cut(s)	505
EaeI	YGGCCR	2 cut(s)	204, 445
EciI	GGCGGA	2 cut(s)	103, 505
Ecl136II	GAGCTC	2 cut(s)	151, 524
Eco130I	CCWWGG	2 cut(s)	75, 238
Eco24I	GRGCYC	4 cut(s)	153, 217, 364, 526
Eco47I	GGWCC	2 cut(s)	198, 235
Eco53kI	GAGCTC	2 cut(s)	151, 524
Eco91I	GGTNACC	1 cut(s)	125
EcoICRI	GAGCTC	2 cut(s)	151, 524
EcoO109I	RGGNCCY	1 cut(s)	198
EcoO65I	GGTNACC	1 cut(s)	125
EcoT14I	CCWWGG	2 cut(s)	75, 238
EcoT38I	GRGCYC	4 cut(s)	153, 217, 364, 526
ErhI	CCWWGG	2 cut(s)	75, 238
FaeI	CATG	2 cut(s)	79, 242
FaiI	YATR	8 cut(s)	34, 77, 93, 104, 240, 405, 456, 579
FaqI	GGGAC	2 cut(s)	211, 652
FatI	CATG	2 cut(s)	75, 238
FauI	CCCGC	1 cut(s)	387
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	42, 545
FokI	GGATG	2 cut(s)	477, 494
FriOI	GRGCYC	4 cut(s)	153, 217, 364, 526
Fsp4HI	GCNGC	2 cut(s)	42, 545
GluI	GCNGC	2 cut(s)	42, 545
GsaI	CCCAGC	1 cut(s)	272
HaeIII	GGCC	3 cut(s)	206, 447, 510
HapII	CCGG	5 cut(s)	123, 291, 326, 519, 624
Hin1II	CATG	2 cut(s)	79, 242
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	5 cut(s)	123, 291, 326, 519, 624
HphI	GGTGA	2 cut(s)	137, 419
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	3 cut(s)	29, 58, 342
Hpy188III	TCNNGA	2 cut(s)	365, 624
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	1 cut(s)	122
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4V	TGCA	3 cut(s)	49, 544, 667
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 550, 563
HpyF3I	CTNAG	2 cut(s)	297, 525
Hsp92II	CATG	2 cut(s)	79, 242
Kpn2I	TCCGGA	1 cut(s)	623
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	24, 335, 487
LmnI	GCTCC	5 cut(s)	58, 116, 293, 521, 626
Lsp1109I	GCAGC	1 cut(s)	556
LweI	GCATC	1 cut(s)	618
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	3 cut(s)	26, 337, 489
MboI	GATC	3 cut(s)	24, 335, 487
MboII	GAAGA	3 cut(s)	31, 313, 422
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	7 cut(s)	74, 153, 192, 217, 364, 468, 526
MluCI	AATT	2 cut(s)	50, 595
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	8 cut(s)	9, 140, 211, 231, 258, 266, 306, 478
MroI	TCCGGA	1 cut(s)	623
MspI	CCGG	5 cut(s)	123, 291, 326, 519, 624
Mva1269I	GAATGC	2 cut(s)	433, 669
MwoI	GCNNNNNNNGC	3 cut(s)	212, 550, 563
NcoI	CCATGG	2 cut(s)	75, 238
NdeII	GATC	3 cut(s)	24, 335, 487
NlaIII	CATG	2 cut(s)	79, 242
NlaIV	GGNNCC	3 cut(s)	189, 199, 324
NmeAIII	GCCGAG	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	125
PctI	GAATGC	2 cut(s)	433, 669
PkrI	GCNGC	2 cut(s)	43, 546
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	198
Psp124BI	GAGCTC	2 cut(s)	153, 526
Psp5II	RGGWCCY	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	268
PspN4I	GGNNCC	3 cut(s)	189, 199, 324
PspPI	GGNCC	3 cut(s)	198, 235, 508
PspPPI	RGGWCCY	1 cut(s)	198
PstI	CTGCAG	1 cut(s)	546
PsuI	RGATCY	1 cut(s)	335
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SacI	GAGCTC	2 cut(s)	153, 526
SatI	GCNGC	2 cut(s)	42, 545
Sau3AI	GATC	3 cut(s)	24, 335, 487
Sau96I	GGNCC	3 cut(s)	198, 235, 508
SchI	GAGTC	1 cut(s)	191
SduI	GDGCHC	7 cut(s)	74, 153, 192, 217, 364, 468, 526
SfaNI	GCATC	1 cut(s)	618
SfcI	CTRYAG	1 cut(s)	542
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	2 cut(s)	198, 235
Sse9I	AATT	2 cut(s)	50, 595
SsiI	CCGC	4 cut(s)	42, 114, 394, 516
SstI	GAGCTC	2 cut(s)	153, 526
StyI	CCWWGG	2 cut(s)	75, 238
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	399
TasI	AATT	2 cut(s)	50, 595
TauI	GCSGC	1 cut(s)	44
TscAI	CASTG	2 cut(s)	51, 199
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	1 cut(s)	544
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	71, 471
TspGWI	ACGGA	2 cut(s)	185, 524
TspRI	CASTG	2 cut(s)	51, 199
VpaK11BI	GGWCC	2 cut(s)	198, 235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.