Rh4BG329600

palmitoyl-(protein) hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0007162
Physical Location & Seq
Forward (+)
49536610 .. 49540108
3499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG329600.1

Sequence Viewer

Length: 1122 bp
ATGAGCTCTTGTGTAAGCCCAACACCGACACGAAAGAGTTGGTGCCCACTGAGACCTCGGCGGCCAATGGGGCTCTGCCTCCTATTGTTTTGGTCCATGGGATTTTCGGCTTTGGCAAAGGGGTATGTTGGTGTTTCGGTGTTTGTGAAAATGGGTTGTGCATTTTTTTTTTTTTTTTTGGGGATTGGTTTGTGTAACTGGGTTTTTGATTTGCAGAGGCTGGGAGGTTTGTCGTATTTCGCCGGAGCTGAGAAGAAAGACGAGAGGGTTCTGGTGCCGGATTTGGGATCTCTGACCAGCGTTTACGACAGGGCTCGTGAGTTGTTCTACTATTTGAAAGGTGGGCGGGTCGATTATGGTGAAGAACACAGCAAAGCCTGTGGGCATTCCCAGTTTGGCCGTCTGTATGAACAAGGGCACTACCCTGAATGGGATGAGGATCATCCTATTCACTTTGTGGGCCATTCCGCCGGAGCTCAGGTCGTCCGTGTTCTGCAGCAAATGCTTGCTGATAAGGCTTTCAAGGGGTATGAGAATACTAACGAGAATTGGGTATTGAGCATCACATCATTGTCCGGAGCGTTCAATGGGACTACAAGAACTTACTTGGATGGAATGCAGCCTGAGGATGGCAAAACCCTGAAGCCCATATGTCTGCTGCAACTATGTCGCATAGGAGTGATTATTTATGACTGGCTAGACATTTCCTGGCTAAAGGAATATTACAACTTTGGGTTTGATCACTATAATATCACATGGAAGAAAGTCGGTGTTTGGGGTCTCATTGATTGCCTCTTGGGAAATTCGGGACCATTCGCTTCTGGGGATTGGATCCTCCCTGACCTTACAATTCAAGGTTCCATAAGACTCAACAGCCATCTACAGTCCTTTCCAAACACATACTACTTCAGCTATGCCACAAAGCGCACTAGGAAGATATGGGGTGTCACACTTCCTTCTAGCATATTCGGAATTCACCCTCTGCTTTTCATCAGAGTGCTGCAGATGAGCCAATGGCGTCATCCTCCTGATGTCTCTCCCCCATATAAGGGTTACAGGTGTGTTTTCAACTGCACGTTATGCTATGGTTTGTTAGGCATCAATGTAAAGTGCAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

373

Amino Acids

42.39

Weight (kDa)

8.78

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lip_C PF24708 95 - 171 1.4e-20 Lipase-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 42, 274
AccIII TCCGGA 1 cut(s) 575
AciI CCGC 3 cut(s) 61, 346, 468
AclWI GGATC 4 cut(s) 295, 447, 826, 839
AcoI YGGCCR 2 cut(s) 62, 397
AcsI RAATTY 2 cut(s) 802, 972
AcuI CTGAAG 2 cut(s) 662, 892
AcyI GRCGYC 1 cut(s) 1018
AdeI CACNNNGTG 1 cut(s) 457
AfiI CCNNNNNNNGG 5 cut(s) 284, 430, 629, 1048, 1049
AgsI TTSAA 5 cut(s) 337, 523, 586, 854, 1069
AjnI CCWGG 1 cut(s) 707
AluBI AGCT 4 cut(s) 6, 248, 476, 912
AluI AGCT 4 cut(s) 6, 248, 476, 912
Alw21I GWGCWC 2 cut(s) 8, 478
Alw26I GTCTC 3 cut(s) 46, 785, 1039
AlwI GGATC 4 cut(s) 295, 447, 826, 839
AlwNI CAGNNNCTG 1 cut(s) 220
Aor13HI TCCGGA 1 cut(s) 575
AoxI GGCC 3 cut(s) 62, 397, 460
ApeKI GCWGC 4 cut(s) 496, 619, 658, 1000
ApoI RAATTY 2 cut(s) 802, 972
AspLEI GCGC 1 cut(s) 927
AspS9I GGNCC 3 cut(s) 93, 460, 809
AsuHPI GGTGA 2 cut(s) 371, 968
AvaII GGWCC 2 cut(s) 93, 809
AxyI CCTNAGG 1 cut(s) 624
BaeGI GKGCMC 2 cut(s) 47, 420
BamHI GGATCC 1 cut(s) 831
BanI GGYRCC 2 cut(s) 42, 274
BanII GRGCYC 4 cut(s) 8, 75, 316, 478
BauI CACGAG 1 cut(s) 315
Bbv12I GWGCWC 2 cut(s) 8, 478
BbvI GCAGC 4 cut(s) 508, 631, 645, 987
BccI CCATC 3 cut(s) 605, 623, 885
BceAI ACGGC 1 cut(s) 384
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 1 cut(s) 709
BclI TGATCA 1 cut(s) 739
BcoDI GTCTC 3 cut(s) 46, 785, 1039
BfaI CTAG 3 cut(s) 698, 930, 960
BfmI CTRYAG 3 cut(s) 494, 881, 1001
BglI GCCNNNNNGGC 1 cut(s) 70
BisI GCNGC 5 cut(s) 62, 497, 620, 659, 1001
BlsI GCNGC 5 cut(s) 63, 498, 621, 660, 1002
Bme1390I CCNGG 1 cut(s) 709
Bme18I GGWCC 2 cut(s) 93, 809
BmgT120I GGNCC 3 cut(s) 93, 460, 809
BmiI GGNNCC 5 cut(s) 44, 276, 810, 833, 859
BmrFI CCNGG 1 cut(s) 709
BmrI ACTGGG 2 cut(s) 208, 385
BmsI GCATC 2 cut(s) 570, 1107
BmuI ACTGGG 2 cut(s) 208, 385
Bpu10I CCTNAGC 1 cut(s) 477
BsaBI GATNNNNATC 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 1018
BsaI GGTCTC 2 cut(s) 46, 785
BsaJI CCNNGG 2 cut(s) 56, 96
BsaWI WCCGGW 1 cut(s) 575
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bsc4I CCNNNNNNNGG 5 cut(s) 284, 430, 629, 1048, 1049
Bse1I ACTGG 3 cut(s) 203, 391, 698
Bse21I CCTNAGG 1 cut(s) 624
Bse8I GATNNNNATC 1 cut(s) 438
BseAI TCCGGA 1 cut(s) 575
BseBI CCWGG 1 cut(s) 709
BseDI CCNNGG 2 cut(s) 56, 96
BseGI GGATG 5 cut(s) 439, 442, 616, 634, 1021
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 5 cut(s) 284, 430, 629, 1048, 1049
BseMII CTCAG 4 cut(s) 41, 240, 491, 615
BseNI ACTGG 3 cut(s) 203, 391, 698
BseSI GKGCMC 2 cut(s) 47, 420
BseXI GCAGC 4 cut(s) 508, 631, 645, 987
BseYI CCCAGC 1 cut(s) 220
BsgI GTGCAG 1 cut(s) 1057
BshFI GGCC 3 cut(s) 64, 399, 462
BshNI GGYRCC 2 cut(s) 42, 274
BsiHKAI GWGCWC 2 cut(s) 8, 478
BsiSI CCGG 4 cut(s) 243, 278, 471, 576
BslFI GGGAC 2 cut(s) 604, 822
BslI CCNNNNNNNGG 5 cut(s) 284, 430, 629, 1048, 1049
BsmAI GTCTC 3 cut(s) 46, 785, 1039
BsmFI GGGAC 2 cut(s) 604, 822
BsmI GAATGC 2 cut(s) 385, 621
BsnI GGCC 3 cut(s) 64, 399, 462
Bso31I GGTCTC 2 cut(s) 46, 785
Bsp1286I GDGCHC 6 cut(s) 8, 47, 75, 316, 420, 478
Bsp13I TCCGGA 1 cut(s) 575
Bsp143I GATC 4 cut(s) 287, 439, 739, 831
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 3 cut(s) 61, 346, 468
BspANI GGCC 3 cut(s) 64, 399, 462
BspCNI CTCAG 4 cut(s) 42, 241, 490, 616
BspEI TCCGGA 1 cut(s) 575
BspLI GGNNCC 5 cut(s) 44, 276, 810, 833, 859
BspMAI CTGCAG 2 cut(s) 498, 1005
BspPI GGATC 4 cut(s) 295, 447, 826, 839
BspT107I GGYRCC 2 cut(s) 42, 274
BspTNI GGTCTC 2 cut(s) 46, 785
BsrI ACTGG 3 cut(s) 203, 391, 698
BssECI CCNNGG 2 cut(s) 56, 96
BssMI GATC 4 cut(s) 287, 439, 739, 831
BssNI GRCGYC 1 cut(s) 1018
BssSI CACGAG 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 709
Bst4CI ACNGT 1 cut(s) 885
BstACI GRCGYC 1 cut(s) 1018
BstAPI GCANNNNNTGC 2 cut(s) 502, 1080
BstC8I GCNNGC 1 cut(s) 507
BstDEI CTNAG 4 cut(s) 50, 249, 477, 624
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 5 cut(s) 439, 442, 616, 634, 1021
BstHHI GCGC 1 cut(s) 927
BstKTI GATC 4 cut(s) 290, 442, 742, 834
BstMAI GTCTC 3 cut(s) 46, 785, 1039
BstMBI GATC 4 cut(s) 287, 439, 739, 831
BstMWI GCNNNNNNNGC 4 cut(s) 70, 502, 515, 1080
BstNI CCWGG 1 cut(s) 709
BstSCI CCNGG 1 cut(s) 707
BstSFI CTRYAG 3 cut(s) 494, 881, 1001
BstSLI GKGCMC 2 cut(s) 47, 420
BstV1I GCAGC 4 cut(s) 508, 631, 645, 987
BstX2I RGATCY 2 cut(s) 287, 831
BstYI RGATCY 2 cut(s) 287, 831
Bsu36I CCTNAGG 1 cut(s) 624
BsuRI GGCC 3 cut(s) 64, 399, 462
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 5 cut(s) 439, 442, 616, 634, 1021
BtsI GCAGTG 1 cut(s) 1120
BtsIMutI CAGTG 2 cut(s) 47, 1120
Cac8I GCNNGC 1 cut(s) 507
CaiI CAGNNNCTG 1 cut(s) 220
CfoI GCGC 1 cut(s) 927
Cfr13I GGNCC 3 cut(s) 93, 460, 809
CseI GACGC 1 cut(s) 1007
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 2 cut(s) 97, 756
DdeI CTNAG 4 cut(s) 50, 249, 477, 624
DpnI GATC 4 cut(s) 289, 441, 741, 833
DpnII GATC 4 cut(s) 287, 439, 739, 831
DraIII CACNNNGTG 1 cut(s) 457
EaeI YGGCCR 2 cut(s) 62, 397
EciI GGCGGA 1 cut(s) 457
Ecl136II GAGCTC 2 cut(s) 6, 476
Eco130I CCWWGG 1 cut(s) 96
Eco24I GRGCYC 4 cut(s) 8, 75, 316, 478
Eco31I GGTCTC 2 cut(s) 46, 785
Eco47I GGWCC 2 cut(s) 93, 809
Eco53kI GAGCTC 2 cut(s) 6, 476
Eco57I CTGAAG 2 cut(s) 662, 892
Eco81I CCTNAGG 1 cut(s) 624
EcoICRI GAGCTC 2 cut(s) 6, 476
EcoRI GAATTC 1 cut(s) 972
EcoRII CCWGG 1 cut(s) 707
EcoT14I CCWWGG 1 cut(s) 96
EcoT38I GRGCYC 4 cut(s) 8, 75, 316, 478
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 2 cut(s) 100, 759
FaqI GGGAC 2 cut(s) 604, 822
FatI CATG 2 cut(s) 96, 755
FauI CCCGC 1 cut(s) 339
FauNDI CATATG 1 cut(s) 650
FbaI TGATCA 1 cut(s) 739
Fnu4HI GCNGC 5 cut(s) 62, 497, 620, 659, 1001
FokI GGATG 5 cut(s) 429, 446, 623, 641, 1008
FriOI GRGCYC 4 cut(s) 8, 75, 316, 478
Fsp4HI GCNGC 5 cut(s) 62, 497, 620, 659, 1001
FspBI CTAG 3 cut(s) 698, 930, 960
GlaI GCGC 1 cut(s) 926
GluI GCNGC 5 cut(s) 62, 497, 620, 659, 1001
GsaI CCCAGC 1 cut(s) 224
HaeIII GGCC 3 cut(s) 64, 399, 462
HapII CCGG 4 cut(s) 243, 278, 471, 576
HgaI GACGC 1 cut(s) 1007
HhaI GCGC 1 cut(s) 927
Hin1I GRCGYC 1 cut(s) 1018
Hin1II CATG 2 cut(s) 100, 759
Hin6I GCGC 1 cut(s) 925
HinP1I GCGC 1 cut(s) 925
HinfI GANTC 1 cut(s) 867
HpaII CCGG 4 cut(s) 243, 278, 471, 576
HphI GGTGA 2 cut(s) 371, 968
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 3 cut(s) 294, 971, 995
Hpy188III TCNNGA 4 cut(s) 317, 576, 807, 1028
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 966
HpyCH4III ACNGT 1 cut(s) 885
HpyCH4IV ACGT 1 cut(s) 1076
HpyCH4V TGCA 8 cut(s) 161, 214, 496, 619, 661, 1003, 1074, 1113
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 502, 515, 1080
HpyF3I CTNAG 4 cut(s) 50, 249, 477, 624
HpySE526I ACGT 1 cut(s) 1076
Hsp92I GRCGYC 1 cut(s) 1018
Hsp92II CATG 2 cut(s) 100, 759
HspAI GCGC 1 cut(s) 925
Kpn2I TCCGGA 1 cut(s) 575
Ksp22I TGATCA 1 cut(s) 739
Kzo9I GATC 4 cut(s) 287, 439, 739, 831
LmnI GCTCC 3 cut(s) 245, 473, 578
Lsp1109I GCAGC 4 cut(s) 508, 631, 645, 987
LweI GCATC 2 cut(s) 570, 1107
MaeI CTAG 3 cut(s) 698, 930, 960
MaeII ACGT 1 cut(s) 1076
MaeIII GTNAC 3 cut(s) 194, 946, 1052
MalI GATC 4 cut(s) 289, 441, 741, 833
MboI GATC 4 cut(s) 287, 439, 739, 831
MboII GAAGA 4 cut(s) 265, 374, 772, 946
MflI RGATCY 2 cut(s) 287, 831
MhlI GDGCHC 6 cut(s) 8, 47, 75, 316, 420, 478
MluCI AATT 4 cut(s) 547, 802, 849, 972
MlyI GAGTC 1 cut(s) 861
MroI TCCGGA 1 cut(s) 575
MslI CAYNNNNRTG 2 cut(s) 677, 995
MspI CCGG 4 cut(s) 243, 278, 471, 576
MspR9I CCNGG 1 cut(s) 709
Mva1269I GAATGC 2 cut(s) 385, 621
MvaI CCWGG 1 cut(s) 709
MwoI GCNNNNNNNGC 4 cut(s) 70, 502, 515, 1080
NcoI CCATGG 1 cut(s) 96
NdeI CATATG 1 cut(s) 650
NdeII GATC 4 cut(s) 287, 439, 739, 831
NlaIII CATG 2 cut(s) 100, 759
NlaIV GGNNCC 5 cut(s) 44, 276, 810, 833, 859
NmeAIII GCCGAG 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 946
PctI GAATGC 2 cut(s) 385, 621
PkrI GCNGC 5 cut(s) 63, 498, 621, 660, 1002
PleI GAGTC 1 cut(s) 861
PpsI GAGTC 1 cut(s) 861
Psp124BI GAGCTC 2 cut(s) 8, 478
Psp6I CCWGG 1 cut(s) 707
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 1 cut(s) 707
PspN4I GGNNCC 5 cut(s) 44, 276, 810, 833, 859
PspPI GGNCC 3 cut(s) 93, 460, 809
PstI CTGCAG 2 cut(s) 498, 1005
PstNI CAGNNNCTG 1 cut(s) 220
PsuI RGATCY 2 cut(s) 287, 831
RseI CAYNNNNRTG 2 cut(s) 677, 995
SacI GAGCTC 2 cut(s) 8, 478
SatI GCNGC 5 cut(s) 62, 497, 620, 659, 1001
Sau3AI GATC 4 cut(s) 287, 439, 739, 831
Sau96I GGNCC 3 cut(s) 93, 460, 809
SchI GAGTC 1 cut(s) 861
ScrFI CCNGG 1 cut(s) 709
SduI GDGCHC 6 cut(s) 8, 47, 75, 316, 420, 478
SfaNI GCATC 2 cut(s) 570, 1107
SfcI CTRYAG 3 cut(s) 494, 881, 1001
SinI GGWCC 2 cut(s) 93, 809
SmiMI CAYNNNNRTG 2 cut(s) 677, 995
Sse9I AATT 4 cut(s) 547, 802, 849, 972
SsiI CCGC 3 cut(s) 61, 346, 468
SspI AATATT 1 cut(s) 722
SspMI CTAG 3 cut(s) 698, 930, 960
SstI GAGCTC 2 cut(s) 8, 478
StyD4I CCNGG 1 cut(s) 707
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 885
TaiI ACGT 1 cut(s) 1079
TaqI TCGA 1 cut(s) 351
TasI AATT 4 cut(s) 547, 802, 849, 972
TauI GCSGC 1 cut(s) 64
TscAI CASTG 2 cut(s) 54, 1120
TseFI GTSAC 1 cut(s) 946
TseI GCWGC 4 cut(s) 496, 619, 658, 1000
Tsp45I GTSAC 1 cut(s) 946
TspDTI ATGAA 2 cut(s) 423, 979
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 2 cut(s) 54, 1120
VpaK11BI GGWCC 2 cut(s) 93, 809
XapI RAATTY 2 cut(s) 802, 972
XspI CTAG 3 cut(s) 698, 930, 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.