Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000354.1

Orthogroup ID

OG0007162

Physical Location & Seq

Genomic Coordinates Forward (+)

8114 .. 9619

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000354.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atgatcagattatggatagccgcactgcaattttcggagctgtttgtgagcaccatggttcatttgctttatgggttttacatattcagctccgccgtcgccggtgacctctcgctggcattgaatgagctcttgtgtaagcccaacacggacaagaaagagtcggtgcccagtgggacctcggccaatggggctctgcctcctattgtgttggtccatgggatttttggctttggcaaagggaggctgggaggtttgtcgtatttcgccggagctgagaagaaagacgagagggttctggtgccggatttgggatctctgaccagcgtttacgacaggcctgaggatggcaaaaccctgaagcccatatgtctgctgcaactttgtcgcataggagtgattatttatgactggctagacatttcctggctaaaggaatattacaactttgggtttgatcactataatatcacatggaaaaaagtcggtgtttggggtctcattgattgcctcttgggaaattcgggaccgttcgctactggggattggatcctccctgaccttacaattcaaggttccataagactcaacagccatctacagtcctttccaaatacatactacttcagctatgccacaaagcgcactaggaagatatggggtgtcacacttccttctagcatattcggaattcaccctctgcttttcatcagagtactgcagatgagccaatggcgtcatcctcctgatgtctctcccccatataagggttacagagatgaggattggcaagaaaatgatggagctctcaataccatctccatgactcgccctcttcttcctgttgaacacccaggccgttttgtgaaagatgattcagagtgccaccccttgcaaccaggcatctggtactacaagattgtggaagctgaccacatattcttcattgtgaatcgggagagagcaggagttcaatttgatctgatatatgacagcatttttgaaaggtgcagaaagcatgtatttagaaaaactccaccaacattacccaaccgaacgcaccattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

355

Amino Acids

40.53

Weight (kDa)

8.13

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10740 AT1G10740 AT1G10740 AT1G10740 AT1G23330 AT1G23330
fragaria_vesca	FvH4_4g25830
malus_domestica	MD13G1097200.v1.1 MD16G1098200.v1.1
prunus_persica	Prupe.1G248400_v2.0.a1
pyrus_communis	pycom13g08490 pycom16g08360
rosa_chinensis	RchiOBHm_Chr4g0433281
rosa_laevigata	RLG00000006767
rosa_multiflora	Rmu_sc0000354.1_g000003 Rmu_sc0001516.1_g000076 Rmu_sc0002512.1_g000003
rosa_roxburghii	Rroxscaffold_5G00374840
rosa_rugosa	Rorug04G0267700
rosa_samantha	Rh4AG322200 Rh4BG329600 Rh4CG344900 Rh4DG326300
rosa_wichuraiana	Rw2G008570 Rw4G027880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	166, 301
AciI	CCGC	2 cut(s)	21, 93
AclWI	GGATC	3 cut(s)	322, 544, 557
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	520, 690
AcuI	CTGAAG	2 cut(s)	380, 610
AcyI	GRCGYC	1 cut(s)	736
AfaI	GTAC	2 cut(s)	717, 911
AfiI	CCNNNNNNNGG	5 cut(s)	115, 311, 347, 766, 767
AgsI	TTSAA	5 cut(s)	124, 572, 848, 974, 1004
AjnI	CCWGG	3 cut(s)	425, 853, 898
AluBI	AGCT	7 cut(s)	40, 90, 130, 275, 630, 806, 929
AluI	AGCT	7 cut(s)	40, 90, 130, 275, 630, 806, 929
Alw21I	GWGCWC	3 cut(s)	53, 132, 808
Alw26I	GTCTC	2 cut(s)	503, 757
AlwI	GGATC	3 cut(s)	322, 544, 557
AoxI	GGCC	3 cut(s)	183, 338, 856
ApeKI	GCWGC	1 cut(s)	376
ApoI	RAATTY	2 cut(s)	520, 690
ArsI	GACNNNNNNTTYG	2 cut(s)	983, 1015
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	3 cut(s)	177, 214, 527
AsuHPI	GGTGA	2 cut(s)	116, 686
AvaII	GGWCC	3 cut(s)	177, 214, 527
AxyI	CCTNAGG	1 cut(s)	342
BaeGI	GKGCMC	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	549
BanI	GGYRCC	2 cut(s)	166, 301
BanII	GRGCYC	3 cut(s)	132, 196, 808
Bbv12I	GWGCWC	3 cut(s)	53, 132, 808
BbvI	GCAGC	1 cut(s)	363
BccI	CCATC	4 cut(s)	341, 603, 794, 824
BceAI	ACGGC	2 cut(s)	80, 843
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	3 cut(s)	427, 855, 900
BclI	TGATCA	2 cut(s)	3, 457
BcoDI	GTCTC	2 cut(s)	503, 757
BfaI	CTAG	3 cut(s)	416, 648, 678
BfmI	CTRYAG	2 cut(s)	599, 719
BglI	GCCNNNNNGGC	1 cut(s)	191
BisI	GCNGC	2 cut(s)	21, 377
BlsI	GCNGC	2 cut(s)	22, 378
BmcAI	AGTACT	1 cut(s)	717
Bme1390I	CCNGG	3 cut(s)	427, 855, 900
Bme18I	GGWCC	3 cut(s)	177, 214, 527
BmgT120I	GGNCC	3 cut(s)	177, 214, 527
BmiI	GGNNCC	6 cut(s)	168, 178, 303, 528, 551, 577
BmrFI	CCNGG	3 cut(s)	427, 855, 900
BmrI	ACTGGG	2 cut(s)	165, 549
BmsI	GCATC	1 cut(s)	912
BmuI	ACTGGG	2 cut(s)	165, 549
BsaHI	GRCGYC	1 cut(s)	736
BsaI	GGTCTC	1 cut(s)	503
BsaJI	CCNNGG	4 cut(s)	54, 180, 217, 853
Bsc4I	CCNNNNNNNGG	5 cut(s)	115, 311, 347, 766, 767
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	3 cut(s)	171, 416, 544
Bse21I	CCTNAGG	1 cut(s)	342
BseBI	CCWGG	3 cut(s)	427, 855, 900
BseDI	CCNNGG	4 cut(s)	54, 180, 217, 853
BseGI	GGATG	2 cut(s)	352, 739
BseLI	CCNNNNNNNGG	5 cut(s)	115, 311, 347, 766, 767
BseMII	CTCAG	2 cut(s)	267, 333
BseNI	ACTGG	3 cut(s)	171, 416, 544
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	363
BseYI	CCCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	1030
BshFI	GGCC	3 cut(s)	185, 340, 858
BshNI	GGYRCC	2 cut(s)	166, 301
BsiHKAI	GWGCWC	3 cut(s)	53, 132, 808
BsiSI	CCGG	3 cut(s)	102, 270, 305
BslFI	GGGAC	2 cut(s)	190, 540
BslI	CCNNNNNNNGG	5 cut(s)	115, 311, 347, 766, 767
BsmAI	GTCTC	2 cut(s)	503, 757
BsmFI	GGGAC	2 cut(s)	190, 540
BsnI	GGCC	3 cut(s)	185, 340, 858
Bso31I	GGTCTC	1 cut(s)	503
Bsp1286I	GDGCHC	5 cut(s)	53, 132, 171, 196, 808
Bsp143I	GATC	5 cut(s)	3, 314, 457, 549, 979
Bsp19I	CCATGG	2 cut(s)	54, 217
BspACI	CCGC	2 cut(s)	21, 93
BspANI	GGCC	3 cut(s)	185, 340, 858
BspCNI	CTCAG	2 cut(s)	268, 334
BspLI	GGNNCC	6 cut(s)	168, 178, 303, 528, 551, 577
BspMAI	CTGCAG	1 cut(s)	723
BspPI	GGATC	3 cut(s)	322, 544, 557
BspT107I	GGYRCC	2 cut(s)	166, 301
BspTNI	GGTCTC	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	3 cut(s)	171, 416, 544
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	4 cut(s)	54, 180, 217, 853
BssMI	GATC	5 cut(s)	3, 314, 457, 549, 979
BssNI	GRCGYC	1 cut(s)	736
BssT1I	CCWWGG	2 cut(s)	54, 217
Bst2UI	CCWGG	3 cut(s)	427, 855, 900
Bst4CI	ACNGT	2 cut(s)	531, 603
Bst6I	CTCTTC	1 cut(s)	840
BstACI	GRCGYC	1 cut(s)	736
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	276, 342
BstDSI	CCRYGG	2 cut(s)	54, 217
BstEII	GGTNACC	1 cut(s)	104
BstF5I	GGATG	2 cut(s)	352, 739
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	5 cut(s)	6, 317, 460, 552, 982
BstMAI	GTCTC	2 cut(s)	503, 757
BstMBI	GATC	5 cut(s)	3, 314, 457, 549, 979
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	3 cut(s)	427, 855, 900
BstNSI	RCATGY	1 cut(s)	1022
BstPI	GGTNACC	1 cut(s)	104
BstSCI	CCNGG	3 cut(s)	425, 853, 898
BstSFI	CTRYAG	2 cut(s)	599, 719
BstSLI	GKGCMC	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	363
BstX2I	RGATCY	2 cut(s)	314, 549
BstXI	CCANNNNNNTGG	1 cut(s)	906
BstYI	RGATCY	2 cut(s)	314, 549
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	3 cut(s)	185, 340, 858
BtgI	CCRYGG	2 cut(s)	54, 217
BtsCI	GGATG	2 cut(s)	352, 739
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	23, 178
Cac8I	GCNNGC	1 cut(s)	117
CfoI	GCGC	1 cut(s)	645
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	3 cut(s)	177, 214, 527
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	2 cut(s)	716, 910
CviAII	CATG	5 cut(s)	55, 218, 474, 823, 1019
CviQI	GTAC	2 cut(s)	716, 910
DdeI	CTNAG	2 cut(s)	276, 342
DpnI	GATC	5 cut(s)	5, 316, 459, 551, 981
DpnII	GATC	5 cut(s)	3, 314, 457, 549, 979
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	840
EarI	CTCTTC	1 cut(s)	840
EciI	GGCGGA	1 cut(s)	82
Ecl136II	GAGCTC	2 cut(s)	130, 806
Eco130I	CCWWGG	2 cut(s)	54, 217
Eco147I	AGGCCT	1 cut(s)	340
Eco24I	GRGCYC	3 cut(s)	132, 196, 808
Eco31I	GGTCTC	1 cut(s)	503
Eco47I	GGWCC	3 cut(s)	177, 214, 527
Eco53kI	GAGCTC	2 cut(s)	130, 806
Eco57I	CTGAAG	2 cut(s)	380, 610
Eco81I	CCTNAGG	1 cut(s)	342
Eco91I	GGTNACC	1 cut(s)	104
EcoICRI	GAGCTC	2 cut(s)	130, 806
EcoO109I	RGGNCCY	1 cut(s)	177
EcoO65I	GGTNACC	1 cut(s)	104
EcoRI	GAATTC	1 cut(s)	690
EcoRII	CCWGG	3 cut(s)	425, 853, 898
EcoT14I	CCWWGG	2 cut(s)	54, 217
EcoT38I	GRGCYC	3 cut(s)	132, 196, 808
ErhI	CCWWGG	2 cut(s)	54, 217
FaeI	CATG	5 cut(s)	58, 221, 477, 826, 1022
FaqI	GGGAC	2 cut(s)	190, 540
FatI	CATG	5 cut(s)	54, 217, 473, 822, 1018
FauNDI	CATATG	1 cut(s)	368
FbaI	TGATCA	2 cut(s)	3, 457
Fnu4HI	GCNGC	2 cut(s)	21, 377
FokI	GGATG	2 cut(s)	359, 726
FriOI	GRGCYC	3 cut(s)	132, 196, 808
Fsp4HI	GCNGC	2 cut(s)	21, 377
FspBI	CTAG	3 cut(s)	416, 648, 678
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	2 cut(s)	21, 377
GsaI	CCCAGC	1 cut(s)	251
HaeIII	GGCC	3 cut(s)	185, 340, 858
HapII	CCGG	3 cut(s)	102, 270, 305
HgaI	GACGC	1 cut(s)	725
HhaI	GCGC	1 cut(s)	645
Hin1I	GRCGYC	1 cut(s)	736
Hin1II	CATG	5 cut(s)	58, 221, 477, 826, 1022
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HinfI	GANTC	5 cut(s)	161, 585, 826, 875, 952
HpaII	CCGG	3 cut(s)	102, 270, 305
HphI	GGTGA	2 cut(s)	116, 686
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	7 cut(s)	8, 37, 321, 689, 713, 880, 984
Hpy188III	TCNNGA	3 cut(s)	525, 746, 956
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	684
HpyCH4III	ACNGT	2 cut(s)	531, 603
HpyCH4V	TGCA	5 cut(s)	28, 379, 721, 895, 1011
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	2 cut(s)	276, 342
Hsp92I	GRCGYC	1 cut(s)	736
Hsp92II	CATG	5 cut(s)	58, 221, 477, 826, 1022
HspAI	GCGC	1 cut(s)	643
Ksp22I	TGATCA	2 cut(s)	3, 457
Kzo9I	GATC	5 cut(s)	3, 314, 457, 549, 979
LmnI	GCTCC	4 cut(s)	37, 95, 272, 803
Lsp1109I	GCAGC	1 cut(s)	363
LweI	GCATC	1 cut(s)	912
MaeI	CTAG	3 cut(s)	416, 648, 678
MaeIII	GTNAC	3 cut(s)	104, 664, 770
MalI	GATC	5 cut(s)	5, 316, 459, 551, 981
MboI	GATC	5 cut(s)	3, 314, 457, 549, 979
MboII	GAAGA	5 cut(s)	292, 664, 827, 830, 934
MflI	RGATCY	2 cut(s)	314, 549
MhlI	GDGCHC	5 cut(s)	53, 132, 171, 196, 808
MluCI	AATT	5 cut(s)	29, 520, 567, 690, 974
MlyI	GAGTC	3 cut(s)	170, 579, 820
MslI	CAYNNNNRTG	2 cut(s)	395, 821
MspI	CCGG	3 cut(s)	102, 270, 305
MspR9I	CCNGG	3 cut(s)	427, 855, 900
MvaI	CCWGG	3 cut(s)	427, 855, 900
MwoI	GCNNNNNNNGC	1 cut(s)	191
NcoI	CCATGG	2 cut(s)	54, 217
NdeI	CATATG	1 cut(s)	368
NdeII	GATC	5 cut(s)	3, 314, 457, 549, 979
NlaIII	CATG	5 cut(s)	58, 221, 477, 826, 1022
NlaIV	GGNNCC	6 cut(s)	168, 178, 303, 528, 551, 577
NmeAIII	GCCGAG	1 cut(s)	161
NmuCI	GTSAC	2 cut(s)	104, 664
NspI	RCATGY	1 cut(s)	1022
PceI	AGGCCT	1 cut(s)	340
PfeI	GAWTC	2 cut(s)	875, 952
PkrI	GCNGC	2 cut(s)	22, 378
PleI	GAGTC	3 cut(s)	169, 579, 820
PpsI	GAGTC	3 cut(s)	169, 579, 820
PpuMI	RGGWCCY	1 cut(s)	177
Psp124BI	GAGCTC	2 cut(s)	132, 808
Psp5II	RGGWCCY	1 cut(s)	177
Psp6I	CCWGG	3 cut(s)	425, 853, 898
PspEI	GGTNACC	1 cut(s)	104
PspFI	CCCAGC	1 cut(s)	247
PspGI	CCWGG	3 cut(s)	425, 853, 898
PspN4I	GGNNCC	6 cut(s)	168, 178, 303, 528, 551, 577
PspPI	GGNCC	3 cut(s)	177, 214, 527
PspPPI	RGGWCCY	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	723
PsuI	RGATCY	2 cut(s)	314, 549
RsaI	GTAC	2 cut(s)	717, 911
RsaNI	GTAC	2 cut(s)	716, 910
RseI	CAYNNNNRTG	2 cut(s)	395, 821
SacI	GAGCTC	2 cut(s)	132, 808
SatI	GCNGC	2 cut(s)	21, 377
Sau3AI	GATC	5 cut(s)	3, 314, 457, 549, 979
Sau96I	GGNCC	3 cut(s)	177, 214, 527
ScaI	AGTACT	1 cut(s)	717
SchI	GAGTC	3 cut(s)	170, 579, 820
ScrFI	CCNGG	3 cut(s)	427, 855, 900
SduI	GDGCHC	5 cut(s)	53, 132, 171, 196, 808
SfaNI	GCATC	1 cut(s)	912
SfcI	CTRYAG	2 cut(s)	599, 719
SgrAI	CRCCGGYG	1 cut(s)	101
SinI	GGWCC	3 cut(s)	177, 214, 527
SmiMI	CAYNNNNRTG	2 cut(s)	395, 821
Sse9I	AATT	5 cut(s)	29, 520, 567, 690, 974
SseBI	AGGCCT	1 cut(s)	340
SsiI	CCGC	2 cut(s)	21, 93
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	3 cut(s)	416, 648, 678
SstI	GAGCTC	2 cut(s)	132, 808
StuI	AGGCCT	1 cut(s)	340
StyD4I	CCNGG	3 cut(s)	425, 853, 898
StyI	CCWWGG	2 cut(s)	54, 217
TaaI	ACNGT	2 cut(s)	531, 603
TasI	AATT	5 cut(s)	29, 520, 567, 690, 974
TatI	WGTACW	1 cut(s)	715
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	875, 952
TscAI	CASTG	2 cut(s)	30, 178
TseFI	GTSAC	2 cut(s)	104, 664
TseI	GCWGC	1 cut(s)	376
Tsp45I	GTSAC	2 cut(s)	104, 664
TspDTI	ATGAA	3 cut(s)	50, 697, 934
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	30, 178
VpaK11BI	GGWCC	3 cut(s)	177, 214, 527
XapI	RAATTY	2 cut(s)	520, 690
XceI	RCATGY	1 cut(s)	1022
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XspI	CTAG	3 cut(s)	416, 648, 678
ZrmI	AGTACT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.