Rw2G008570

palmitoyl-(protein) hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0007162
Physical Location & Seq
Reverse (-)
8575513 .. 8578437
2925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G008570.1

Sequence Viewer

Length: 984 bp
ATGAACCCAGTAATCTTAAATCTTACTCTTGGAGAGTTGGAGTCTTGGGGAGAGCGGAGGCCGGAGCTCAGGAAGACGAGCAGTCGGAGTAGACAGGAGGAAGGAGTGTATGAAAGACACAAATGGTCAAATGGAATTGGTCAATTGGATTGGATAATTATGTTTGGTCATGGAAATGTTTGGTCAATTGGATTGGATAAAAATATATATATATTTCTGTTTGTAGTGCAATGCCATCAGGTTTTTCACCACAATACTCATGGTGCACTGCCCAGCGTTTACGACAGGGCTCGTGAGTTGTTCTACTATTTGAAAGGTGGGCGGGTCGATTATGGTGAAGAACACAGCAAAGCCTGTGGGCATTCCCAGTTTGGCCGTCTGTATGAACAAGGGCACTACCCTGAATGGGATGAGGATCATCCTATTCACTTTGTGGGCCATTCCGCCGGAGCTCAGGTCGTCCGTGTTCTGCAGCAAATGCTTGCTGATAAGGCTTTCAAGGGGTATGAGAATACTAACGAGAATTGGGTATTGAGCATCACATCATTGTCCGGAGCGTTCAATGGGACTACAAGAACTTACTTGGATGGAATGCAGCCTGAGGATGGCAAAACCCTAAAGCCCATATGTCTGCTGCAACTATGTCGCATAGGAGTGATTATTTATGACTGGCTAGACATTTCCTGGCTAAAGGAATATTACAACTTTGGGTTTGATCACTATAATATCACATGGAAGAAAGTCGGTGTTTGGGGTCTCATTGATTGCCTCTTGGGAAATTCGGGACCATTCGCTTTTTGGGTGGATTCAAACAAATTTTCAACAATTCACACGACGGTTCTTACCGATATCATTGTTGGATGCACACAAAGACGACAAAAGTCACACCACGGCATATTTATGTCGACAGCTTGTCGACAGCATGTCGGCAGATCTGCCGGTCCATCAGACAACGGATTGAGCTGCAAACCGTCGACCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

37.39

Weight (kDa)

6.99

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lip_C PF24708 85 - 163 9.5e-21 Lipase-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 55
AccI GTMKAC 4 cut(s) 91, 905, 916, 974
AccIII TCCGGA 1 cut(s) 551
AciI CCGC 3 cut(s) 55, 322, 444
AclWI GGATC 1 cut(s) 423
AcoI YGGCCR 1 cut(s) 373
AcsI RAATTY 2 cut(s) 778, 815
AdeI CACNNNGTG 1 cut(s) 433
AfiI CCNNNNNNNGG 2 cut(s) 406, 605
AgsI TTSAA 5 cut(s) 313, 499, 562, 810, 822
AhdI GACNNNNNGTC 3 cut(s) 81, 912, 923
AjnI CCWGG 1 cut(s) 683
AluBI AGCT 4 cut(s) 67, 452, 911, 963
AluI AGCT 4 cut(s) 67, 452, 911, 963
Alw21I GWGCWC 3 cut(s) 69, 268, 454
Alw26I GTCTC 1 cut(s) 761
Alw44I GTGCAC 1 cut(s) 264
AlwI GGATC 1 cut(s) 423
Aor13HI TCCGGA 1 cut(s) 551
AoxI GGCC 3 cut(s) 59, 373, 436
ApaLI GTGCAC 1 cut(s) 264
ApeKI GCWGC 4 cut(s) 472, 595, 634, 963
ApoI RAATTY 2 cut(s) 778, 815
AspS9I GGNCC 3 cut(s) 436, 785, 941
AsuHPI GGTGA 2 cut(s) 239, 347
AvaII GGWCC 2 cut(s) 785, 941
AxyI CCTNAGG 1 cut(s) 600
BaeGI GKGCMC 2 cut(s) 268, 396
BanII GRGCYC 3 cut(s) 69, 292, 454
BauI CACGAG 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 3 cut(s) 69, 268, 454
BbvI GCAGC 4 cut(s) 484, 607, 621, 950
BccI CCATC 4 cut(s) 243, 581, 599, 952
BceAI ACGGC 2 cut(s) 360, 907
BcgI CGANNNNNNTGC 2 cut(s) 626, 660
BciT130I CCWGG 1 cut(s) 685
BclI TGATCA 1 cut(s) 715
BcoDI GTCTC 1 cut(s) 761
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 1 cut(s) 470
BglII AGATCT 1 cut(s) 932
BisI GCNGC 4 cut(s) 473, 596, 635, 964
BlsI GCNGC 4 cut(s) 474, 597, 636, 965
Bme1390I CCNGG 1 cut(s) 685
Bme18I GGWCC 2 cut(s) 785, 941
BmeRI GACNNNNNGTC 3 cut(s) 81, 912, 923
BmgT120I GGNCC 3 cut(s) 436, 785, 941
BmiI GGNNCC 1 cut(s) 786
BmrFI CCNGG 1 cut(s) 685
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 2 cut(s) 546, 851
BmuI ACTGGG 1 cut(s) 361
BoxI GACNNNNGTC 1 cut(s) 880
BpiI GAAGAC 1 cut(s) 80
Bpu10I CCTNAGC 2 cut(s) 68, 453
BsaBI GATNNNNATC 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 761
BsaJI CCNNGG 1 cut(s) 889
BsaWI WCCGGW 1 cut(s) 551
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 605
Bse118I RCCGGY 1 cut(s) 938
Bse1I ACTGG 3 cut(s) 8, 367, 674
Bse21I CCTNAGG 1 cut(s) 600
Bse3DI GCAATG 1 cut(s) 236
Bse8I GATNNNNATC 1 cut(s) 414
BseAI TCCGGA 1 cut(s) 551
BseBI CCWGG 1 cut(s) 685
BseDI CCNNGG 1 cut(s) 889
BseGI GGATG 5 cut(s) 415, 418, 592, 610, 866
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 2 cut(s) 406, 605
BseMI GCAATG 1 cut(s) 236
BseMII CTCAG 3 cut(s) 82, 467, 591
BseNI ACTGG 3 cut(s) 8, 367, 674
BseSI GKGCMC 2 cut(s) 268, 396
BseXI GCAGC 4 cut(s) 484, 607, 621, 950
BseYI CCCAGC 1 cut(s) 272
BshFI GGCC 3 cut(s) 61, 375, 438
BsiHKAI GWGCWC 3 cut(s) 69, 268, 454
BsiSI CCGG 4 cut(s) 62, 447, 552, 939
BslFI GGGAC 2 cut(s) 580, 798
BslI CCNNNNNNNGG 2 cut(s) 406, 605
BsmAI GTCTC 1 cut(s) 761
BsmFI GGGAC 2 cut(s) 580, 798
BsmI GAATGC 2 cut(s) 361, 597
BsnI GGCC 3 cut(s) 61, 375, 438
Bso31I GGTCTC 1 cut(s) 761
Bsp1286I GDGCHC 5 cut(s) 69, 268, 292, 396, 454
Bsp13I TCCGGA 1 cut(s) 551
Bsp143I GATC 3 cut(s) 415, 715, 932
BspACI CCGC 3 cut(s) 55, 322, 444
BspANI GGCC 3 cut(s) 61, 375, 438
BspCNI CTCAG 3 cut(s) 81, 466, 592
BspEI TCCGGA 1 cut(s) 551
BspLI GGNNCC 1 cut(s) 786
BspMAI CTGCAG 1 cut(s) 474
BspPI GGATC 1 cut(s) 423
BspTNI GGTCTC 1 cut(s) 761
BsrBI CCGCTC 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 938
BsrI ACTGG 3 cut(s) 8, 367, 674
BssAI RCCGGY 1 cut(s) 938
BssECI CCNNGG 1 cut(s) 889
BssMI GATC 3 cut(s) 415, 715, 932
BssSI CACGAG 1 cut(s) 291
Bst2BI CACGAG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 685
Bst4CI ACNGT 2 cut(s) 838, 972
BstAPI GCANNNNNTGC 1 cut(s) 478
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 3 cut(s) 68, 453, 600
BstDSI CCRYGG 1 cut(s) 889
BstF5I GGATG 5 cut(s) 415, 418, 592, 610, 866
BstKTI GATC 3 cut(s) 418, 718, 935
BstMAI GTCTC 1 cut(s) 761
BstMBI GATC 3 cut(s) 415, 715, 932
BstMWI GCNNNNNNNGC 2 cut(s) 478, 491
BstNI CCWGG 1 cut(s) 685
BstNSI RCATGY 1 cut(s) 926
BstPAI GACNNNNGTC 1 cut(s) 880
BstSCI CCNGG 1 cut(s) 683
BstSFI CTRYAG 1 cut(s) 470
BstSLI GKGCMC 2 cut(s) 268, 396
BstV1I GCAGC 4 cut(s) 484, 607, 621, 950
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 932
BstYI RGATCY 1 cut(s) 932
Bsu36I CCTNAGG 1 cut(s) 600
BsuRI GGCC 3 cut(s) 61, 375, 438
BtgI CCRYGG 1 cut(s) 889
BtsCI GGATG 5 cut(s) 415, 418, 592, 610, 866
BtsI GCAGTG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 266
Cac8I GCNNGC 1 cut(s) 483
Cfr10I RCCGGY 1 cut(s) 938
Cfr13I GGNCC 3 cut(s) 436, 785, 941
CspCI CAANNNNNGTGG 2 cut(s) 337, 372
CviAII CATG 4 cut(s) 170, 260, 732, 923
DdeI CTNAG 3 cut(s) 68, 453, 600
DpnI GATC 3 cut(s) 417, 717, 934
DpnII GATC 3 cut(s) 415, 715, 932
DraIII CACNNNGTG 1 cut(s) 433
DriI GACNNNNNGTC 3 cut(s) 81, 912, 923
EaeI YGGCCR 1 cut(s) 373
Eam1105I GACNNNNNGTC 3 cut(s) 81, 912, 923
EciI GGCGGA 1 cut(s) 433
Ecl136II GAGCTC 2 cut(s) 67, 452
Eco24I GRGCYC 3 cut(s) 69, 292, 454
Eco31I GGTCTC 1 cut(s) 761
Eco32I GATATC 1 cut(s) 850
Eco47I GGWCC 2 cut(s) 785, 941
Eco53kI GAGCTC 2 cut(s) 67, 452
Eco81I CCTNAGG 1 cut(s) 600
EcoICRI GAGCTC 2 cut(s) 67, 452
EcoRII CCWGG 1 cut(s) 683
EcoRV GATATC 1 cut(s) 850
EcoT38I GRGCYC 3 cut(s) 69, 292, 454
FaeI CATG 4 cut(s) 173, 263, 735, 926
FaqI GGGAC 2 cut(s) 580, 798
FatI CATG 4 cut(s) 169, 259, 731, 922
FauI CCCGC 1 cut(s) 315
FauNDI CATATG 1 cut(s) 626
FbaI TGATCA 1 cut(s) 715
FblI GTMKAC 4 cut(s) 91, 905, 916, 974
Fnu4HI GCNGC 4 cut(s) 473, 596, 635, 964
FokI GGATG 5 cut(s) 405, 422, 599, 617, 873
FriOI GRGCYC 3 cut(s) 69, 292, 454
Fsp4HI GCNGC 4 cut(s) 473, 596, 635, 964
FspBI CTAG 1 cut(s) 674
GluI GCNGC 4 cut(s) 473, 596, 635, 964
GsaI CCCAGC 1 cut(s) 276
HaeIII GGCC 3 cut(s) 61, 375, 438
HapII CCGG 4 cut(s) 62, 447, 552, 939
Hin1II CATG 4 cut(s) 173, 263, 735, 926
HincII GTYRAC 3 cut(s) 906, 917, 975
HindII GTYRAC 3 cut(s) 906, 917, 975
HinfI GANTC 2 cut(s) 41, 806
HpaII CCGG 4 cut(s) 62, 447, 552, 939
HphI GGTGA 2 cut(s) 239, 347
Hpy166II GTNNAC 6 cut(s) 92, 266, 280, 906, 917, 975
Hpy188I TCNGA 2 cut(s) 87, 949
Hpy188III TCNNGA 4 cut(s) 70, 293, 552, 783
Hpy8I GTNNAC 6 cut(s) 92, 266, 280, 906, 917, 975
Hpy99I CGWCG 2 cut(s) 838, 976
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 2 cut(s) 838, 972
HpyCH4V TGCA 7 cut(s) 229, 266, 472, 595, 637, 864, 966
HpyF10VI GCNNNNNNNGC 2 cut(s) 478, 491
HpyF3I CTNAG 3 cut(s) 68, 453, 600
Hsp92II CATG 4 cut(s) 173, 263, 735, 926
Kpn2I TCCGGA 1 cut(s) 551
Ksp22I TGATCA 1 cut(s) 715
Kzo9I GATC 3 cut(s) 415, 715, 932
LmnI GCTCC 3 cut(s) 64, 449, 554
Lsp1109I GCAGC 4 cut(s) 484, 607, 621, 950
LweI GCATC 2 cut(s) 546, 851
MaeI CTAG 1 cut(s) 674
MaeIII GTNAC 1 cut(s) 882
MalI GATC 3 cut(s) 417, 717, 934
MbiI CCGCTC 1 cut(s) 55
MboI GATC 3 cut(s) 415, 715, 932
MboII GAAGA 3 cut(s) 85, 350, 748
MfeI CAATTG 2 cut(s) 143, 186
MflI RGATCY 1 cut(s) 932
MhlI GDGCHC 5 cut(s) 69, 268, 292, 396, 454
MluCI AATT 8 cut(s) 135, 143, 156, 186, 523, 778, 815, 825
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 3 cut(s) 18, 65, 838
MnlI CCTC 5 cut(s) 51, 91, 406, 595, 779
MroI TCCGGA 1 cut(s) 551
MseI TTAA 1 cut(s) 17
MslI CAYNNNNRTG 3 cut(s) 174, 653, 899
MspI CCGG 4 cut(s) 62, 447, 552, 939
MspR9I CCNGG 1 cut(s) 685
MunI CAATTG 2 cut(s) 143, 186
Mva1269I GAATGC 2 cut(s) 361, 597
MvaI CCWGG 1 cut(s) 685
MwoI GCNNNNNNNGC 2 cut(s) 478, 491
NdeI CATATG 1 cut(s) 626
NdeII GATC 3 cut(s) 415, 715, 932
NlaIII CATG 4 cut(s) 173, 263, 735, 926
NlaIV GGNNCC 1 cut(s) 786
NmuCI GTSAC 1 cut(s) 882
NspI RCATGY 1 cut(s) 926
PctI GAATGC 2 cut(s) 361, 597
PfeI GAWTC 1 cut(s) 806
PkrI GCNGC 4 cut(s) 474, 597, 636, 965
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PshAI GACNNNNGTC 1 cut(s) 880
Psp124BI GAGCTC 2 cut(s) 69, 454
Psp6I CCWGG 1 cut(s) 683
PspFI CCCAGC 1 cut(s) 272
PspGI CCWGG 1 cut(s) 683
PspN4I GGNNCC 1 cut(s) 786
PspPI GGNCC 3 cut(s) 436, 785, 941
PstI CTGCAG 1 cut(s) 474
PsuI RGATCY 1 cut(s) 932
RseI CAYNNNNRTG 3 cut(s) 174, 653, 899
SacI GAGCTC 2 cut(s) 69, 454
SalI GTCGAC 3 cut(s) 904, 915, 973
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 4 cut(s) 473, 596, 635, 964
Sau3AI GATC 3 cut(s) 415, 715, 932
Sau96I GGNCC 3 cut(s) 436, 785, 941
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 685
SduI GDGCHC 5 cut(s) 69, 268, 292, 396, 454
SetI ASST 7 cut(s) 69, 243, 319, 454, 459, 913, 965
SfaNI GCATC 2 cut(s) 546, 851
SfcI CTRYAG 1 cut(s) 470
SinI GGWCC 2 cut(s) 785, 941
SmiMI CAYNNNNRTG 3 cut(s) 174, 653, 899
Sse9I AATT 8 cut(s) 135, 143, 156, 186, 523, 778, 815, 825
SsiI CCGC 3 cut(s) 55, 322, 444
SspI AATATT 1 cut(s) 698
SspMI CTAG 1 cut(s) 674
SstI GAGCTC 2 cut(s) 69, 454
StyD4I CCNGG 1 cut(s) 683
TaaI ACNGT 2 cut(s) 838, 972
TaqI TCGA 4 cut(s) 327, 905, 916, 974
TasI AATT 8 cut(s) 135, 143, 156, 186, 523, 778, 815, 825
TfiI GAWTC 1 cut(s) 806
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 882
TseI GCWGC 4 cut(s) 472, 595, 634, 963
Tsp45I GTSAC 1 cut(s) 882
TspDTI ATGAA 3 cut(s) 17, 126, 399
TspGWI ACGGA 2 cut(s) 452, 969
TspRI CASTG 1 cut(s) 273
VneI GTGCAC 1 cut(s) 264
VpaK11BI GGWCC 2 cut(s) 785, 941
XapI RAATTY 2 cut(s) 778, 815
XceI RCATGY 1 cut(s) 926
XcmI CCANNNNNNNNNTGG 2 cut(s) 257, 795
XmiI GTMKAC 4 cut(s) 91, 905, 916, 974
XspI CTAG 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.