Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007162

Physical Location & Seq

Genomic Coordinates Forward (+)

5663081 .. 5665619

Gene Structure 2539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08490.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGCTGACGAGTTTGGAGAAAATGGTAAGACTATGGATTGCGGCGCTGCAATTTTCGGAGCTTTTTATGAGCAGCTTGGTTCACATGCTGTACGGGTTCTATATCTTTAGCACCGCCGTGGCCGGCGATCTGTCGCAGGCGCTGAACGATTTGCTCTCGAAGCCGAACGTGAGCATTGAGGTGAAGGATGAGGTGGCACAGAGAGACCTGTCGGCCAATGGCAGCCTGCCACCTATTGTTTTGGTTCATGGGATATTTGGTTTTGGGAAGGGGAGATTGGGAAGTTTATCGTATTTCGCCGGGGCGGAGAAGAAGGATGACAGGGTTCTGGTGCCTGATTTGGGATCTCTCACGAGCATTTATGATAGGGCTCGTGAATTGTTCTACTATTTGAAGGGTGGGCGAGTCGATTATGGTGAAGAACACAGCAAGGCTTGTGGGCACTCACAATTCGGTCGAATTTACGAACAAGGGCACTACCCTGAATGGGATGAGGATCACCCTCTTCACTTTGTCGGCCATTCAGCTGGAGCACAGGTTGTCCGTGTGCTGCAGCAAATGCTTGCTGATAAGGCGTTCAAGGGGTTTGAGAACACGAATGAGAATTGGGTACTGAGCATAACATCATTGTCAGGAGCATTCAATGGGACAACAAGAACCTACTTGGACGGAATGCAGCCAGAAGATGGAAAAACTTTGAAACCGATATGTCTGCTGCAGTTATGCCGGCTAGGAGTGATCATTTACGATTGGTTTGACATTCCCTGGCTGAAGGCTTATTACAACTTCGGATTTGATCACTATAACCTCACATGGAAGAAAGTGGGTGTCAGGGGTCTTGTTGATTGCCTCTTGGGAAACTCAGGCCCGTTTGCTTCTGGTGATTGGATTCTCCCAGACCTAGCACTTCAAGGCTCCATAAGACTTAACAGCCATCTCCATTCCTTCCCCAACACATACTACTTCAGCTATGCCACTAAGCGTACCAAGAAGGTGTTGGGTGTCACAGTTCCTTCAAGTATATTCGGAATTCATCCATTGCTTTTTATTAGAGTGTTGCAGATGAGCCAATGGCGTCACCCTCCAGATGTCTCTCCCCCATACAAAGGCTACAGGGATGAGGATTGGCAGGACAATGATGGCGCTTTGAATACCATCTCCATGACACGCCCTCTTCTTCCCATTGAACATCCAAGCCGGTTTGTAAAAGATGAATCAGATTGTCATCCCTTGCAACCGGGCATCTGGTACTACAAGATTGTGGAAGCTGATCTCATATTCTTCATTGTGAATCGGGAGAGAGCCGGAGTTCAGTTTGATCTGATATACGACAGCATTTTTGAACGCTGCAGAAAGCATGTATTTAGAAAAACTCCTCAGACTTTACCGAATGAAACACACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

469

Amino Acids

53.3

Weight (kDa)

6.52

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10740 AT1G10740 AT1G10740 AT1G10740 AT1G23330 AT1G23330
fragaria_vesca	FvH4_4g25830
malus_domestica	MD13G1097200.v1.1 MD16G1098200.v1.1
prunus_persica	Prupe.1G248400_v2.0.a1
pyrus_communis	pycom13g08490 pycom16g08360
rosa_chinensis	RchiOBHm_Chr4g0433281
rosa_laevigata	RLG00000006767
rosa_multiflora	Rmu_sc0000354.1_g000003 Rmu_sc0001516.1_g000076 Rmu_sc0002512.1_g000003
rosa_roxburghii	Rroxscaffold_5G00374840
rosa_rugosa	Rorug04G0267700
rosa_samantha	Rh4AG322200 Rh4BG329600 Rh4CG344900 Rh4DG326300
rosa_wichuraiana	Rw2G008570 Rw4G027880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	331
AccB7I	CCANNNNNTGG	1 cut(s)	686
AciI	CCGC	3 cut(s)	41, 114, 305
AclWI	GGATC	2 cut(s)	352, 504
AcoI	YGGCCR	3 cut(s)	120, 213, 517
AcsI	RAATTY	2 cut(s)	459, 1029
AcuI	CTGAAG	2 cut(s)	791, 949
AcyI	GRCGYC	1 cut(s)	1075
AfaI	GTAC	4 cut(s)	92, 612, 985, 1250
AfiI	CCNNNNNNNGG	4 cut(s)	341, 487, 686, 1106
AgsI	TTSAA	9 cut(s)	394, 580, 643, 700, 911, 1017, 1150, 1187, 1343
AjnI	CCWGG	1 cut(s)	764
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	5 cut(s)	61, 75, 527, 969, 1268
AluI	AGCT	5 cut(s)	61, 75, 527, 969, 1268
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	2 cut(s)	198, 1096
AlwI	GGATC	2 cut(s)	352, 504
AlwNI	CAGNNNCTG	1 cut(s)	142
AoxI	GGCC	4 cut(s)	120, 213, 517, 865
ApeKI	GCWGC	8 cut(s)	46, 72, 222, 550, 553, 676, 715, 1347
ApoI	RAATTY	2 cut(s)	459, 1029
ArsI	GACNNNNNNTTYG	2 cut(s)	1322, 1354
AspLEI	GCGC	3 cut(s)	46, 142, 1145
AspS9I	GGNCC	1 cut(s)	866
AsuC2I	CCSGG	2 cut(s)	301, 1239
AsuHPI	GGTGA	5 cut(s)	193, 428, 491, 893, 1070
BaeGI	GKGCMC	2 cut(s)	444, 477
BanI	GGYRCC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	373
BarI	GAAGNNNNNNTAC	2 cut(s)	764, 796
BauI	CACGAG	2 cut(s)	352, 372
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	8 cut(s)	33, 84, 234, 537, 565, 688, 702, 1334
BccI	CCATC	4 cut(s)	680, 942, 1133, 1163
BceAI	ACGGC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	694, 728
BciT130I	CCWGG	1 cut(s)	766
BclI	TGATCA	2 cut(s)	738, 796
BcnI	CCSGG	2 cut(s)	301, 1239
BcoDI	GTCTC	2 cut(s)	198, 1096
BfaI	CTAG	2 cut(s)	731, 902
BfmI	CTRYAG	4 cut(s)	551, 716, 1111, 1348
BfoI	RGCGCY	3 cut(s)	47, 143, 1146
BisI	GCNGC	9 cut(s)	42, 47, 73, 223, 551, 554, 677, 716, 1348
BlsI	GCNGC	9 cut(s)	43, 48, 74, 224, 552, 555, 678, 717, 1349
Bme1390I	CCNGG	3 cut(s)	301, 766, 1239
BmgT120I	GGNCC	1 cut(s)	866
BmiI	GGNNCC	2 cut(s)	333, 916
BmrFI	CCNGG	3 cut(s)	301, 766, 1239
BmsI	GCATC	1 cut(s)	1251
BpmI	CTGGAG	2 cut(s)	549, 1068
BpuMI	CCSGG	2 cut(s)	301, 1239
BsaBI	GATNNNNATC	2 cut(s)	495, 1224
BsaHI	GRCGYC	1 cut(s)	1075
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	3 cut(s)	117, 300, 764
BsaXI	ACNNNNNCTCC	2 cut(s)	522, 552
Bsc4I	CCNNNNNNNGG	4 cut(s)	341, 487, 686, 1106
Bse118I	RCCGGY	3 cut(s)	122, 726, 1197
Bse3DI	GCAATG	1 cut(s)	1037
Bse8I	GATNNNNATC	2 cut(s)	495, 1224
BseBI	CCWGG	1 cut(s)	766
BseDI	CCNNGG	3 cut(s)	117, 300, 764
BseGI	GGATG	7 cut(s)	193, 322, 496, 1033, 1123, 1189, 1225
BseJI	GATNNNNATC	2 cut(s)	495, 1224
BseLI	CCNNNNNNNGG	4 cut(s)	341, 487, 686, 1106
BseMI	GCAATG	1 cut(s)	1037
BseMII	CTCAG	3 cut(s)	605, 876, 1391
BseRI	GAGGAG	1 cut(s)	1365
BseSI	GKGCMC	2 cut(s)	444, 477
BseXI	GCAGC	8 cut(s)	33, 84, 234, 537, 565, 688, 702, 1334
Bsh1285I	CGRYCG	1 cut(s)	457
BshFI	GGCC	4 cut(s)	122, 215, 519, 867
BshNI	GGYRCC	1 cut(s)	331
BsiEI	CGRYCG	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	535
BsiSI	CCGG	6 cut(s)	123, 300, 727, 1198, 1238, 1305
BslFI	GGGAC	1 cut(s)	661
BslI	CCNNNNNNNGG	4 cut(s)	341, 487, 686, 1106
BsmAI	GTCTC	2 cut(s)	198, 1096
BsmFI	GGGAC	1 cut(s)	661
BsmI	GAATGC	2 cut(s)	638, 678
BsnI	GGCC	4 cut(s)	122, 215, 519, 867
Bso31I	GGTCTC	1 cut(s)	198
Bsp1286I	GDGCHC	4 cut(s)	373, 444, 477, 535
Bsp143I	GATC	7 cut(s)	127, 344, 496, 738, 796, 1270, 1318
BspACI	CCGC	3 cut(s)	41, 114, 305
BspANI	GGCC	4 cut(s)	122, 215, 519, 867
BspCNI	CTCAG	3 cut(s)	606, 875, 1390
BspLI	GGNNCC	2 cut(s)	333, 916
BspMAI	CTGCAG	3 cut(s)	555, 720, 1352
BspPI	GGATC	2 cut(s)	352, 504
BspT107I	GGYRCC	1 cut(s)	331
BspTNI	GGTCTC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	1037
BsrFI	RCCGGY	3 cut(s)	122, 726, 1197
BssAI	RCCGGY	3 cut(s)	122, 726, 1197
BssECI	CCNNGG	3 cut(s)	117, 300, 764
BssMI	GATC	7 cut(s)	127, 344, 496, 738, 796, 1270, 1318
BssNI	GRCGYC	1 cut(s)	1075
BssSI	CACGAG	2 cut(s)	352, 372
Bst2BI	CACGAG	2 cut(s)	352, 372
Bst2UI	CCWGG	1 cut(s)	766
Bst4CI	ACNGT	1 cut(s)	1009
Bst6I	CTCTTC	2 cut(s)	510, 1179
BstACI	GRCGYC	1 cut(s)	1075
BstAPI	GCANNNNNTGC	1 cut(s)	559
BstC8I	GCNNGC	5 cut(s)	124, 138, 227, 564, 728
BstDEI	CTNAG	4 cut(s)	614, 862, 978, 1377
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	7 cut(s)	193, 322, 496, 1033, 1123, 1189, 1225
BstH2I	RGCGCY	3 cut(s)	47, 143, 1146
BstHHI	GCGC	3 cut(s)	46, 142, 1145
BstKTI	GATC	7 cut(s)	130, 347, 499, 741, 799, 1273, 1321
BstMAI	GTCTC	2 cut(s)	198, 1096
BstMBI	GATC	7 cut(s)	127, 344, 496, 738, 796, 1270, 1318
BstMCI	CGRYCG	1 cut(s)	457
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 559, 572
BstNI	CCWGG	1 cut(s)	766
BstNSI	RCATGY	2 cut(s)	88, 1361
BstSCI	CCNGG	3 cut(s)	299, 764, 1237
BstSFI	CTRYAG	4 cut(s)	551, 716, 1111, 1348
BstSLI	GKGCMC	2 cut(s)	444, 477
BstV1I	GCAGC	8 cut(s)	33, 84, 234, 537, 565, 688, 702, 1334
BstX2I	RGATCY	1 cut(s)	344
BstXI	CCANNNNNNTGG	1 cut(s)	527
BstYI	RGATCY	1 cut(s)	344
BsuRI	GGCC	4 cut(s)	122, 215, 519, 867
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	7 cut(s)	193, 322, 496, 1033, 1123, 1189, 1225
Cac8I	GCNNGC	5 cut(s)	124, 138, 227, 564, 728
CaiI	CAGNNNCTG	1 cut(s)	142
CfoI	GCGC	3 cut(s)	46, 142, 1145
Cfr10I	RCCGGY	3 cut(s)	122, 726, 1197
Cfr13I	GGNCC	1 cut(s)	866
CseI	GACGC	1 cut(s)	1064
Csp6I	GTAC	4 cut(s)	91, 611, 984, 1249
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	5 cut(s)	85, 248, 813, 1162, 1358
CviQI	GTAC	4 cut(s)	91, 611, 984, 1249
DdeI	CTNAG	4 cut(s)	614, 862, 978, 1377
DpnI	GATC	7 cut(s)	129, 346, 498, 740, 798, 1272, 1320
DpnII	GATC	7 cut(s)	127, 344, 496, 738, 796, 1270, 1318
EaeI	YGGCCR	3 cut(s)	120, 213, 517
Eam1104I	CTCTTC	2 cut(s)	510, 1179
EarI	CTCTTC	2 cut(s)	510, 1179
EciI	GGCGGA	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	373
Eco31I	GGTCTC	1 cut(s)	198
Eco57I	CTGAAG	2 cut(s)	791, 949
EcoRI	GAATTC	1 cut(s)	1029
EcoRII	CCWGG	1 cut(s)	764
EcoT38I	GRGCYC	1 cut(s)	373
FaeI	CATG	5 cut(s)	88, 251, 816, 1165, 1361
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	5 cut(s)	84, 247, 812, 1161, 1357
FbaI	TGATCA	2 cut(s)	738, 796
Fnu4HI	GCNGC	9 cut(s)	42, 47, 73, 223, 551, 554, 677, 716, 1348
FokI	GGATG	7 cut(s)	200, 329, 503, 1020, 1130, 1176, 1212
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	9 cut(s)	42, 47, 73, 223, 551, 554, 677, 716, 1348
FspBI	CTAG	2 cut(s)	731, 902
GlaI	GCGC	3 cut(s)	45, 141, 1144
GluI	GCNGC	9 cut(s)	42, 47, 73, 223, 551, 554, 677, 716, 1348
GsuI	CTGGAG	2 cut(s)	549, 1068
HaeII	RGCGCY	3 cut(s)	47, 143, 1146
HaeIII	GGCC	4 cut(s)	122, 215, 519, 867
HapII	CCGG	6 cut(s)	123, 300, 727, 1198, 1238, 1305
HgaI	GACGC	1 cut(s)	1064
HhaI	GCGC	3 cut(s)	46, 142, 1145
Hin1I	GRCGYC	1 cut(s)	1075
Hin1II	CATG	5 cut(s)	88, 251, 816, 1165, 1361
Hin6I	GCGC	3 cut(s)	44, 140, 1143
HinP1I	GCGC	3 cut(s)	44, 140, 1143
HinfI	GANTC	4 cut(s)	405, 889, 1214, 1291
HpaII	CCGG	6 cut(s)	123, 300, 727, 1198, 1238, 1305
HphI	GGTGA	5 cut(s)	193, 428, 491, 893, 1070
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	6 cut(s)	58, 791, 1028, 1219, 1323, 1380
Hpy188III	TCNNGA	6 cut(s)	157, 352, 374, 633, 1085, 1295
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	8 cut(s)	178, 262, 307, 388, 766, 955, 985, 1023
HpyCH4III	ACNGT	1 cut(s)	1009
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	7 cut(s)	49, 553, 676, 718, 1060, 1234, 1350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 559, 572
HpyF3I	CTNAG	4 cut(s)	614, 862, 978, 1377
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	1075
Hsp92II	CATG	5 cut(s)	88, 251, 816, 1165, 1361
HspAI	GCGC	3 cut(s)	44, 140, 1143
KroI	GCCGGC	2 cut(s)	122, 726
KroNI	GCCGGC	2 cut(s)	124, 728
Ksp22I	TGATCA	2 cut(s)	738, 796
Kzo9I	GATC	7 cut(s)	127, 344, 496, 738, 796, 1270, 1318
LmnI	GCTCC	4 cut(s)	58, 530, 635, 920
Lsp1109I	GCAGC	8 cut(s)	33, 84, 234, 537, 565, 688, 702, 1334
LweI	GCATC	1 cut(s)	1251
MaeI	CTAG	2 cut(s)	731, 902
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	1003, 1076
MalI	GATC	7 cut(s)	129, 346, 498, 740, 798, 1272, 1320
MboI	GATC	7 cut(s)	127, 344, 496, 738, 796, 1270, 1318
MboII	GAAGA	8 cut(s)	322, 431, 497, 695, 829, 1166, 1169, 1273
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	4 cut(s)	373, 444, 477, 535
MluCI	AATT	6 cut(s)	50, 377, 449, 459, 604, 1029
MlyI	GAGTC	1 cut(s)	414
MroNI	GCCGGC	2 cut(s)	122, 726
MseI	TTAA	1 cut(s)	927
MslI	CAYNNNNRTG	3 cut(s)	116, 179, 1160
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	6 cut(s)	123, 300, 727, 1198, 1238, 1305
MspR9I	CCNGG	3 cut(s)	301, 766, 1239
Mva1269I	GAATGC	2 cut(s)	638, 678
MvaI	CCWGG	1 cut(s)	766
MwoI	GCNNNNNNNGC	3 cut(s)	160, 559, 572
NaeI	GCCGGC	2 cut(s)	124, 728
NciI	CCSGG	2 cut(s)	301, 1239
NdeII	GATC	7 cut(s)	127, 344, 496, 738, 796, 1270, 1318
NgoMIV	GCCGGC	2 cut(s)	122, 726
NlaIII	CATG	5 cut(s)	88, 251, 816, 1165, 1361
NlaIV	GGNNCC	2 cut(s)	333, 916
NmuCI	GTSAC	2 cut(s)	1003, 1076
NspI	RCATGY	2 cut(s)	88, 1361
OliI	CACNNNNGTG	1 cut(s)	116
PctI	GAATGC	2 cut(s)	638, 678
PdiI	GCCGGC	2 cut(s)	124, 728
PfeI	GAWTC	3 cut(s)	889, 1214, 1291
PflMI	CCANNNNNTGG	1 cut(s)	686
PkrI	GCNGC	9 cut(s)	43, 48, 74, 224, 552, 555, 678, 717, 1349
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	764
PspN4I	GGNNCC	2 cut(s)	333, 916
PspPI	GGNCC	1 cut(s)	866
PstI	CTGCAG	3 cut(s)	555, 720, 1352
PstNI	CAGNNNCTG	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	4 cut(s)	92, 612, 985, 1250
RsaNI	GTAC	4 cut(s)	91, 611, 984, 1249
RseI	CAYNNNNRTG	3 cut(s)	116, 179, 1160
SaqAI	TTAA	1 cut(s)	927
SatI	GCNGC	9 cut(s)	42, 47, 73, 223, 551, 554, 677, 716, 1348
Sau3AI	GATC	7 cut(s)	127, 344, 496, 738, 796, 1270, 1318
Sau96I	GGNCC	1 cut(s)	866
SchI	GAGTC	1 cut(s)	414
ScrFI	CCNGG	3 cut(s)	301, 766, 1239
SduI	GDGCHC	4 cut(s)	373, 444, 477, 535
SfaNI	GCATC	1 cut(s)	1251
SfcI	CTRYAG	4 cut(s)	551, 716, 1111, 1348
SmiMI	CAYNNNNRTG	3 cut(s)	116, 179, 1160
Sse9I	AATT	6 cut(s)	50, 377, 449, 459, 604, 1029
SsiI	CCGC	3 cut(s)	41, 114, 305
SspMI	CTAG	2 cut(s)	731, 902
StyD4I	CCNGG	3 cut(s)	299, 764, 1237
TaaI	ACNGT	1 cut(s)	1009
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	3 cut(s)	158, 408, 457
TaqII	GACCGA	1 cut(s)	443
TasI	AATT	6 cut(s)	50, 377, 449, 459, 604, 1029
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	3 cut(s)	889, 1214, 1291
Tru1I	TTAA	1 cut(s)	927
Tru9I	TTAA	1 cut(s)	927
TseFI	GTSAC	2 cut(s)	1003, 1076
TseI	GCWGC	8 cut(s)	46, 72, 222, 550, 553, 676, 715, 1347
Tsp45I	GTSAC	2 cut(s)	1003, 1076
TspDTI	ATGAA	5 cut(s)	236, 1022, 1227, 1273, 1407
TspGWI	ACGGA	2 cut(s)	533, 684
Van91I	CCANNNNNTGG	1 cut(s)	686
XapI	RAATTY	2 cut(s)	459, 1029
XceI	RCATGY	2 cut(s)	88, 1361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	994
XspI	CTAG	2 cut(s)	731, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.