Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007703

Physical Location & Seq

Genomic Coordinates Reverse (-)

9648021 .. 9649323

Gene Structure 1303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCGCTCGAGGCTCTTACATCACCAAGATTAGCTTCTCCGATTCCTCCTTTGTTCGAAGATTCTTCAGTCTTCCATGGAGTCGAGCACTGGACAAAGGGTAAGCGATCTAAGAGATCAAGATCCGATTTCCACCACCAAAACCTCACTGAGGAAGAGTATCTAGCTTTTTGCCTCATGCTTCTCGCTCGCGACAACCGTCAGCCTCCTCCTCCTCCGGCGGTGGAGAAGTTGAGCTACAAGTGTAGCGTCTGCGACAAGACGTTCTCTTCTTACCAAGCTCTCGGTGGTCACAAGGCAAGCCACCGTAAGAACTTATCACAGACTCTCTCCGGCGGAGGAGATGATCATTCAACCTCGTCGGCGACAACCACATCCGCCGTGACTACTGGAAGTGGGAAATCACACGTTTGCACCATCTGTAACAAGTCTTTTCCTTCCGGTCAAGCTCTCGGCGGACACAAGCGGTGCCACTACGAAGGAAACAACAACATCAACACTAGTAGCGTGTCCAACTCCGAAGGTGCGGGGTCCACTAGCCACGTTAGCAGTAGCCACCGTGGGTTTGACCTCAACATCCCTCCGATCCCTGAATTCTCGATGGTCAACGGAGACGACGAAGTCATGAGCCCTATGCCGGCGAAGAAGCCTCGGTTTGACTTTCCGGTCAAACTTCAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

227

Amino Acids

24.61

Weight (kDa)

8.52

Isoelectric Point (pI)

65.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	80 - 104	1.5e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	136 - 159	1.6e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27730 AT3G49930 AT5G04340 AT5G67450
fragaria_vesca	FvH4_2g33250
malus_domestica	MD01G1041900.v1.1 MD03G1122300.v1.1 MD08G1086500.v1.1 MD15G1071400.v1.1
prunus_persica	Prupe.1G424300_v2.0.a1
pyrus_communis	pycom08g07100 pycom15g06720
rosa_chinensis	RchiOBHm_Chr6g0309391
rosa_laevigata	RLG00000010570
rosa_multiflora	Rmu_co8321009.1_g000001 Rmu_sc0012466.1_g000004 Rmu_sc0017306.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159440
rosa_rugosa	Rorug06G0371800
rosa_samantha	Rh6AG484900 Rh6BG494100 Rh6CG499000 Rh6DG485300
rosa_wichuraiana	Rw6G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	620, 665
AccB1I	GGYRCC	1 cut(s)	468
AccII	CGCG	1 cut(s)	192
AciI	CCGC	6 cut(s)	221, 336, 378, 456, 466, 527
AclWI	GGATC	2 cut(s)	117, 580
AcsI	RAATTY	1 cut(s)	593
AcuI	CTGAAG	1 cut(s)	51
AfiI	CCNNNNNNNGG	2 cut(s)	151, 637
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	2 cut(s)	354, 677
AhlI	ACTAGT	1 cut(s)	500
AjuI	GAANNNNNNNTTGG	2 cut(s)	19, 51
AluBI	AGCT	5 cut(s)	35, 167, 237, 281, 449
AluI	AGCT	5 cut(s)	35, 167, 237, 281, 449
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	606
AlwI	GGATC	2 cut(s)	117, 580
Ama87I	CYCGRG	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	593
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	531
AsuHPI	GGTGA	1 cut(s)	15
AsuII	TTCGAA	1 cut(s)	57
AvaI	CYCGRG	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	531
BanI	GGYRCC	1 cut(s)	468
BanII	GRGCYC	1 cut(s)	632
BarI	GAAGNNNNNNTAC	2 cut(s)	221, 253
BbsI	GAAGAC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	90
BccI	CCATC	2 cut(s)	425, 595
BceAI	ACGGC	1 cut(s)	365
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	606
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	3 cut(s)	164, 501, 537
BfoI	RGCGCY	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	531
BmeT110I	CYCGRG	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	531
BmiI	GGNNCC	2 cut(s)	470, 532
BoxI	GACNNNNGTC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	64
Bpu14I	TTCGAA	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	121
BsaJI	CCNNGG	3 cut(s)	76, 559, 650
BsaWI	WCCGGW	2 cut(s)	440, 664
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 637
Bse118I	RCCGGY	1 cut(s)	637
Bse1I	ACTGG	2 cut(s)	95, 394
Bse8I	GATNNNNATC	1 cut(s)	121
BseDI	CCNNGG	3 cut(s)	76, 559, 650
BseGI	GGATG	2 cut(s)	374, 576
BseJI	GATNNNNATC	1 cut(s)	121
BseLI	CCNNNNNNNGG	2 cut(s)	151, 637
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	95, 394
BseRI	GAGGAG	4 cut(s)	198, 201, 204, 354
Bsh1236I	CGCG	1 cut(s)	192
BshNI	GGYRCC	1 cut(s)	468
BsiHKAI	GWGCWC	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	8
BsiSI	CCGG	5 cut(s)	218, 333, 441, 638, 665
BslI	CCNNNNNNNGG	2 cut(s)	151, 637
BsmAI	GTCTC	1 cut(s)	606
BsmBI	CGTCTC	1 cut(s)	606
BsoBI	CYCGRG	1 cut(s)	8
Bsp119I	TTCGAA	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	90, 632
Bsp143I	GATC	5 cut(s)	107, 116, 122, 346, 585
Bsp19I	CCATGG	1 cut(s)	76
Bsp68I	TCGCGA	1 cut(s)	192
BspACI	CCGC	6 cut(s)	221, 336, 378, 456, 466, 527
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	624
BspLI	GGNNCC	2 cut(s)	470, 532
BspPI	GGATC	2 cut(s)	117, 580
BspT104I	TTCGAA	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	468
BsrFI	RCCGGY	1 cut(s)	637
BsrI	ACTGG	2 cut(s)	95, 394
BssAI	RCCGGY	1 cut(s)	637
BssECI	CCNNGG	3 cut(s)	76, 559, 650
BssMI	GATC	5 cut(s)	107, 116, 122, 346, 585
BssT1I	CCWWGG	1 cut(s)	76
Bst4CI	ACNGT	3 cut(s)	200, 308, 560
Bst6I	CTCTTC	2 cut(s)	150, 274
BstBI	TTCGAA	1 cut(s)	57
BstC8I	GCNNGC	3 cut(s)	190, 301, 639
BstDEI	CTNAG	2 cut(s)	111, 150
BstDSI	CCRYGG	2 cut(s)	76, 559
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	374, 576
BstFNI	CGCG	1 cut(s)	192
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	5 cut(s)	110, 119, 125, 349, 588
BstMAI	GTCTC	1 cut(s)	606
BstMBI	GATC	5 cut(s)	107, 116, 122, 346, 585
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 546
BstPAI	GACNNNNGTC	1 cut(s)	198
BstUI	CGCG	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BtgI	CCRYGG	2 cut(s)	76, 559
BtsCI	GGATG	2 cut(s)	374, 576
BtsIMutI	CAGTG	2 cut(s)	88, 147
BtuMI	TCGCGA	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	190, 301, 639
CciI	TCATGA	1 cut(s)	624
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	637
Cfr13I	GGNCC	1 cut(s)	531
CseI	GACGC	1 cut(s)	238
CviAII	CATG	3 cut(s)	77, 178, 625
DdeI	CTNAG	2 cut(s)	111, 150
DpnI	GATC	5 cut(s)	109, 118, 124, 348, 587
DpnII	GATC	5 cut(s)	107, 116, 122, 346, 585
DrdI	GACNNNNNNGTC	2 cut(s)	620, 665
DseDI	GACNNNNNNGTC	2 cut(s)	620, 665
Eam1104I	CTCTTC	2 cut(s)	150, 274
EarI	CTCTTC	2 cut(s)	150, 274
EciI	GGCGGA	3 cut(s)	351, 367, 471
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	632
Eco47I	GGWCC	1 cut(s)	531
Eco57I	CTGAAG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	8
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	593
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	632
ErhI	CCWWGG	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	606
FaeI	CATG	3 cut(s)	80, 181, 628
FaiI	YATR	4 cut(s)	78, 179, 626, 635
FalI	AAGNNNNNCTT	2 cut(s)	19, 51
FatI	CATG	3 cut(s)	76, 177, 624
FauI	CCCGC	1 cut(s)	520
FbaI	TGATCA	1 cut(s)	346
FokI	GGATG	2 cut(s)	361, 563
FriOI	GRGCYC	1 cut(s)	632
FspBI	CTAG	3 cut(s)	164, 501, 537
GlaI	GCGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	8
HapII	CCGG	5 cut(s)	218, 333, 441, 638, 665
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	3 cut(s)	80, 181, 628
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HinfI	GANTC	4 cut(s)	43, 62, 81, 325
HpaII	CCGG	5 cut(s)	218, 333, 441, 638, 665
HphI	GGTGA	1 cut(s)	15
Hpy166II	GTNNAC	2 cut(s)	534, 607
Hpy188I	TCNGA	4 cut(s)	42, 127, 520, 585
Hpy188III	TCNNGA	4 cut(s)	120, 191, 598, 625
Hpy8I	GTNNAC	2 cut(s)	534, 607
Hpy99I	CGWCG	2 cut(s)	364, 620
HpyAV	CCTTC	3 cut(s)	447, 473, 515
HpyCH4III	ACNGT	3 cut(s)	200, 308, 560
HpyCH4IV	ACGT	3 cut(s)	263, 408, 543
HpyCH4V	TGCA	1 cut(s)	414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 546
HpyF3I	CTNAG	2 cut(s)	111, 150
HpySE526I	ACGT	3 cut(s)	263, 408, 543
Hsp92II	CATG	3 cut(s)	80, 181, 628
HspAI	GCGC	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	637
KroNI	GCCGGC	1 cut(s)	639
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	5 cut(s)	107, 116, 122, 346, 585
LpnPI	CCDG	8 cut(s)	76, 231, 346, 375, 454, 603, 651, 678
MaeI	CTAG	3 cut(s)	164, 501, 537
MaeII	ACGT	3 cut(s)	263, 408, 543
MaeIII	GTNAC	3 cut(s)	290, 382, 422
MalI	GATC	5 cut(s)	109, 118, 124, 348, 587
MboI	GATC	5 cut(s)	107, 116, 122, 346, 585
MboII	GAAGA	6 cut(s)	57, 64, 71, 167, 261, 655
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	2 cut(s)	90, 632
MluCI	AATT	1 cut(s)	593
MlyI	GAGTC	2 cut(s)	90, 319
MmeI	TCCRAC	1 cut(s)	537
MroNI	GCCGGC	1 cut(s)	637
MseI	TTAA	1 cut(s)	682
MspI	CCGG	5 cut(s)	218, 333, 441, 638, 665
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	11, 546
NaeI	GCCGGC	1 cut(s)	639
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	5 cut(s)	107, 116, 122, 346, 585
NgoMIV	GCCGGC	1 cut(s)	637
NlaIII	CATG	3 cut(s)	80, 181, 628
NlaIV	GGNNCC	2 cut(s)	470, 532
NmeAIII	GCCGAG	1 cut(s)	432
NmuCI	GTSAC	2 cut(s)	290, 382
NruI	TCGCGA	1 cut(s)	192
NspV	TTCGAA	1 cut(s)	57
PaeR7I	CTCGAG	1 cut(s)	8
PagI	TCATGA	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	2 cut(s)	196, 615
PdiI	GCCGGC	1 cut(s)	639
PfeI	GAWTC	2 cut(s)	43, 62
PflFI	GACNNNGTC	1 cut(s)	620
PleI	GAGTC	2 cut(s)	89, 319
PpsI	GAGTC	2 cut(s)	89, 319
PshAI	GACNNNNGTC	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	470, 532
PspPI	GGNCC	1 cut(s)	531
PspXI	VCTCGAGB	1 cut(s)	8
PsuI	RGATCY	1 cut(s)	122
PsyI	GACNNNGTC	1 cut(s)	620
RruI	TCGCGA	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	682
Sau3AI	GATC	5 cut(s)	107, 116, 122, 346, 585
Sau96I	GGNCC	1 cut(s)	531
SchI	GAGTC	2 cut(s)	90, 319
SduI	GDGCHC	2 cut(s)	90, 632
Sfr274I	CTCGAG	1 cut(s)	8
SfuI	TTCGAA	1 cut(s)	57
SinI	GGWCC	1 cut(s)	531
SlaI	CTCGAG	1 cut(s)	8
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
SpeI	ACTAGT	1 cut(s)	500
Sse9I	AATT	1 cut(s)	593
SsiI	CCGC	6 cut(s)	221, 336, 378, 456, 466, 527
SspMI	CTAG	3 cut(s)	164, 501, 537
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	3 cut(s)	200, 308, 560
TaiI	ACGT	3 cut(s)	266, 411, 546
TaqI	TCGA	4 cut(s)	9, 57, 84, 599
TasI	AATT	1 cut(s)	593
TfiI	GAWTC	2 cut(s)	43, 62
Tru1I	TTAA	1 cut(s)	682
Tru9I	TTAA	1 cut(s)	682
TscAI	CASTG	2 cut(s)	95, 154
TseFI	GTSAC	2 cut(s)	290, 382
Tsp45I	GTSAC	2 cut(s)	290, 382
TspGWI	ACGGA	1 cut(s)	624
TspRI	CASTG	2 cut(s)	95, 154
Tth111I	GACNNNGTC	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	531
XagI	CCTNNNNNAGG	1 cut(s)	149
XapI	RAATTY	1 cut(s)	593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284
XhoI	CTCGAG	1 cut(s)	8
XspI	CTAG	3 cut(s)	164, 501, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.