Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007703

Physical Location & Seq

Genomic Coordinates Forward (+)

7196216 .. 7197169

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1086500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCTCTGCAAGCTCTCAACTCGCCAACACACGCCGGATCGTCTCCTTTCCAGCTCGAGACCAAGACCTCGAGCTTCAGCTATGTCGAGCCGTGGACCAAACGCAAGCGTTCCAAGCGTCCACGCCTCGACACCCCTCATACCGAGGAGGAGTACCTCGCTCTCTGCCTCATCATGCTCGCCCGCGGTAATAGAGATGGAGACCTCGCCGCTACCACAGCCACTAAAGCAACAGCCTCCGCTGCCTCACACCAGATCATCACTCAATCCCCTTCTATGGAGCTCTCCACGTCAACAGCGCCGCCGGCTAACCTGAGCTACAAGTGCTCTGTTTGCGACAAGAGCTTCTCTTCTTACCAGGCCCTCGGAGGACACAAGGCCAGCCACCGAAAAGGCTCTGCTGCCGGATCGGCCGTCGAGGGCCCGTCCACGTCCTCAAACACCACAAACTCCCGCCACCACCACCGCCATCCCTTCGGGAAGGTCCCACGAGTGCTCCATATGCCACAAGTCTTTCCCCACCGGTCAAGCCTTGGGCGGCCACAAGCGCTGCCACTACGATGGCGGCGCCGCAGGATCCACCGCTACCACAAGCGCTATAACTTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

204

Amino Acids

22.58

Weight (kDa)

10.7

Isoelectric Point (pI)

69.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	107 - 131	8.9e-14	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27730 AT3G49930 AT5G04340 AT5G67450
fragaria_vesca	FvH4_2g33250
malus_domestica	MD01G1041900.v1.1 MD03G1122300.v1.1 MD08G1086500.v1.1 MD15G1071400.v1.1
prunus_persica	Prupe.1G424300_v2.0.a1
pyrus_communis	pycom08g07100 pycom15g06720
rosa_chinensis	RchiOBHm_Chr6g0309391
rosa_laevigata	RLG00000010570
rosa_multiflora	Rmu_co8321009.1_g000001 Rmu_sc0012466.1_g000004 Rmu_sc0017306.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159440
rosa_rugosa	Rorug06G0371800
rosa_samantha	Rh6AG484900 Rh6BG494100 Rh6CG499000 Rh6DG485300
rosa_wichuraiana	Rw6G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	567
AccII	CGCG	1 cut(s)	186
AclWI	GGATC	4 cut(s)	46, 415, 571, 584
AcoI	YGGCCR	2 cut(s)	411, 539
AcuI	CTGAAG	1 cut(s)	61
AcyI	GRCGYC	1 cut(s)	568
AfaI	GTAC	1 cut(s)	155
AfeI	AGCGCT	2 cut(s)	549, 596
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgeI	ACCGGT	1 cut(s)	522
AjiI	CACGTC	2 cut(s)	291, 432
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	7 cut(s)	14, 55, 75, 81, 283, 318, 345
AluI	AGCT	7 cut(s)	14, 55, 75, 81, 283, 318, 345
Alw21I	GWGCWC	3 cut(s)	285, 329, 498
Alw26I	GTCTC	3 cut(s)	48, 53, 195
AlwI	GGATC	4 cut(s)	46, 415, 571, 584
Ama87I	CYCGRG	2 cut(s)	56, 70
Aor51HI	AGCGCT	2 cut(s)	549, 596
AoxI	GGCC	5 cut(s)	360, 378, 411, 421, 539
ApaI	GGGCCC	1 cut(s)	425
ApeKI	GCWGC	3 cut(s)	242, 401, 550
AsiGI	ACCGGT	1 cut(s)	522
AspLEI	GCGC	4 cut(s)	301, 550, 570, 597
AspS9I	GGNCC	5 cut(s)	96, 361, 421, 422, 484
AvaI	CYCGRG	2 cut(s)	56, 70
AvaII	GGWCC	2 cut(s)	96, 484
BaeGI	GKGCMC	1 cut(s)	425
BamHI	GGATCC	1 cut(s)	576
BanI	GGYRCC	1 cut(s)	567
BanII	GRGCYC	2 cut(s)	285, 425
BauI	CACGAG	1 cut(s)	489
Bbv12I	GWGCWC	3 cut(s)	285, 329, 498
BbvI	GCAGC	3 cut(s)	229, 388, 537
BccI	CCATC	3 cut(s)	191, 477, 555
BceAI	ACGGC	2 cut(s)	76, 398
BciT130I	CCWGG	1 cut(s)	359
BcoDI	GTCTC	3 cut(s)	48, 53, 195
BfoI	RGCGCY	4 cut(s)	302, 551, 571, 598
BglI	GCCNNNNNGGC	1 cut(s)	410
BisI	GCNGC	8 cut(s)	210, 243, 302, 402, 539, 551, 566, 571
BlsI	GCNGC	8 cut(s)	211, 244, 303, 403, 540, 552, 567, 572
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	2 cut(s)	96, 484
BmeT110I	CYCGRG	2 cut(s)	56, 70
BmgBI	CACGTC	2 cut(s)	291, 432
BmgT120I	GGNCC	5 cut(s)	96, 361, 421, 422, 484
BmiI	GGNNCC	4 cut(s)	423, 486, 569, 578
BmrFI	CCNGG	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	314
BsaHI	GRCGYC	1 cut(s)	568
BsaI	GGTCTC	2 cut(s)	53, 195
BsaJI	CCNNGG	5 cut(s)	92, 144, 184, 364, 532
BsaWI	WCCGGW	1 cut(s)	522
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse118I	RCCGGY	2 cut(s)	304, 522
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	5 cut(s)	92, 144, 184, 364, 532
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	305
BseRI	GAGGAG	2 cut(s)	161, 164
BseSI	GKGCMC	1 cut(s)	425
BseX3I	CGGCCG	1 cut(s)	411
BseXI	GCAGC	3 cut(s)	229, 388, 537
Bsh1236I	CGCG	1 cut(s)	186
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	5 cut(s)	362, 380, 413, 423, 541
BshNI	GGYRCC	1 cut(s)	567
BshTI	ACCGGT	1 cut(s)	522
BsiEI	CGRYCG	1 cut(s)	414
BsiHKAI	GWGCWC	3 cut(s)	285, 329, 498
BsiHKCI	CYCGRG	2 cut(s)	56, 70
BsiSI	CCGG	4 cut(s)	36, 305, 405, 523
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	3 cut(s)	48, 53, 195
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	5 cut(s)	362, 380, 413, 423, 541
Bso31I	GGTCTC	2 cut(s)	53, 195
BsoBI	CYCGRG	2 cut(s)	56, 70
Bsp120I	GGGCCC	1 cut(s)	421
Bsp1286I	GDGCHC	4 cut(s)	285, 329, 425, 498
Bsp143I	GATC	4 cut(s)	38, 255, 407, 576
BspANI	GGCC	5 cut(s)	362, 380, 413, 423, 541
BspCNI	CTCAG	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	4 cut(s)	423, 486, 569, 578
BspPI	GGATC	4 cut(s)	46, 415, 571, 584
BspT107I	GGYRCC	1 cut(s)	567
BspTNI	GGTCTC	2 cut(s)	53, 195
BsrFI	RCCGGY	2 cut(s)	304, 522
BssAI	RCCGGY	2 cut(s)	304, 522
BssECI	CCNNGG	5 cut(s)	92, 144, 184, 364, 532
BssMI	GATC	4 cut(s)	38, 255, 407, 576
BssNI	GRCGYC	1 cut(s)	568
BssSI	CACGAG	1 cut(s)	489
BssT1I	CCWWGG	1 cut(s)	532
Bst2BI	CACGAG	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	355
BstACI	GRCGYC	1 cut(s)	568
BstC8I	GCNNGC	6 cut(s)	12, 107, 180, 184, 306, 382
BstDEI	CTNAG	1 cut(s)	314
BstDSI	CCRYGG	2 cut(s)	92, 184
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	1 cut(s)	186
BstH2I	RGCGCY	4 cut(s)	302, 551, 571, 598
BstHHI	GCGC	4 cut(s)	301, 550, 570, 597
BstKTI	GATC	4 cut(s)	41, 258, 410, 579
BstMAI	GTCTC	3 cut(s)	48, 53, 195
BstMBI	GATC	4 cut(s)	38, 255, 407, 576
BstMCI	CGRYCG	1 cut(s)	414
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	425
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	3 cut(s)	229, 388, 537
BstX2I	RGATCY	1 cut(s)	576
BstXI	CCANNNNNNTGG	1 cut(s)	561
BstYI	RGATCY	1 cut(s)	576
BstZI	CGGCCG	1 cut(s)	411
BsuRI	GGCC	5 cut(s)	362, 380, 413, 423, 541
BtgI	CCRYGG	2 cut(s)	92, 184
BtrI	CACGTC	2 cut(s)	291, 432
BtsCI	GGATG	1 cut(s)	469
Cac8I	GCNNGC	6 cut(s)	12, 107, 180, 184, 306, 382
CfoI	GCGC	4 cut(s)	301, 550, 570, 597
Cfr10I	RCCGGY	2 cut(s)	304, 522
Cfr13I	GGNCC	5 cut(s)	96, 361, 421, 422, 484
Cfr42I	CCGCGG	1 cut(s)	187
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	154
CspAI	ACCGGT	1 cut(s)	522
CviAII	CATG	1 cut(s)	175
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	314
DinI	GGCGCC	1 cut(s)	569
DpnI	GATC	4 cut(s)	40, 257, 409, 578
DpnII	GATC	4 cut(s)	38, 255, 407, 576
EaeI	YGGCCR	2 cut(s)	411, 539
EagI	CGGCCG	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
Ecl136II	GAGCTC	1 cut(s)	283
EclXI	CGGCCG	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	532
Eco24I	GRGCYC	2 cut(s)	285, 425
Eco31I	GGTCTC	2 cut(s)	53, 195
Eco47I	GGWCC	2 cut(s)	96, 484
Eco47III	AGCGCT	2 cut(s)	549, 596
Eco52I	CGGCCG	1 cut(s)	411
Eco53kI	GAGCTC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	61
Eco88I	CYCGRG	2 cut(s)	56, 70
EcoICRI	GAGCTC	1 cut(s)	283
EcoO109I	RGGNCCY	3 cut(s)	361, 421, 484
EcoRII	CCWGG	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	532
EcoT38I	GRGCYC	2 cut(s)	285, 425
EgeI	GGCGCC	1 cut(s)	569
EheI	GGCGCC	1 cut(s)	569
ErhI	CCWWGG	1 cut(s)	532
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	1 cut(s)	178
FaiI	YATR	7 cut(s)	84, 141, 176, 278, 501, 503, 600
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	1 cut(s)	174
FauI	CCCGC	2 cut(s)	191, 461
FauNDI	CATATG	1 cut(s)	501
Fnu4HI	GCNGC	8 cut(s)	210, 243, 302, 402, 539, 551, 566, 571
FokI	GGATG	1 cut(s)	456
FriOI	GRGCYC	2 cut(s)	285, 425
Fsp4HI	GCNGC	8 cut(s)	210, 243, 302, 402, 539, 551, 566, 571
GlaI	GCGC	4 cut(s)	300, 549, 569, 596
GluI	GCNGC	8 cut(s)	210, 243, 302, 402, 539, 551, 566, 571
HaeII	RGCGCY	4 cut(s)	302, 551, 571, 598
HaeIII	GGCC	5 cut(s)	362, 380, 413, 423, 541
HapII	CCGG	4 cut(s)	36, 305, 405, 523
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	4 cut(s)	301, 550, 570, 597
Hin1I	GRCGYC	1 cut(s)	568
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	4 cut(s)	299, 548, 568, 595
HinP1I	GCGC	4 cut(s)	299, 548, 568, 595
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HpaII	CCGG	4 cut(s)	36, 305, 405, 523
Hpy166II	GTNNAC	4 cut(s)	96, 122, 294, 429
Hpy188I	TCNGA	2 cut(s)	368, 611
Hpy188III	TCNNGA	2 cut(s)	58, 478
Hpy8I	GTNNAC	4 cut(s)	96, 122, 294, 429
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	3 cut(s)	282, 475, 484
HpyCH4IV	ACGT	2 cut(s)	290, 431
HpyCH4V	TGCA	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	314
HpySE526I	ACGT	2 cut(s)	290, 431
Hsp92I	GRCGYC	1 cut(s)	568
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	4 cut(s)	299, 548, 568, 595
KasI	GGCGCC	1 cut(s)	567
KroI	GCCGGC	1 cut(s)	304
KroNI	GCCGGC	1 cut(s)	306
KspI	CCGCGG	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	38, 255, 407, 576
LmnI	GCTCC	2 cut(s)	280, 501
Lsp1109I	GCAGC	3 cut(s)	229, 388, 537
MaeII	ACGT	2 cut(s)	290, 431
MalI	GATC	4 cut(s)	40, 257, 409, 578
MboI	GATC	4 cut(s)	38, 255, 407, 576
MboII	GAAGA	1 cut(s)	342
MflI	RGATCY	1 cut(s)	576
MhlI	GDGCHC	4 cut(s)	285, 329, 425, 498
Mly113I	GGCGCC	1 cut(s)	568
MroNI	GCCGGC	1 cut(s)	304
MslI	CAYNNNNRTG	1 cut(s)	559
MspA1I	CMGCKG	2 cut(s)	186, 242
MspI	CCGG	4 cut(s)	36, 305, 405, 523
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MvnI	CGCG	1 cut(s)	186
NaeI	GCCGGC	1 cut(s)	306
NarI	GGCGCC	1 cut(s)	568
NdeI	CATATG	1 cut(s)	501
NdeII	GATC	4 cut(s)	38, 255, 407, 576
NgoMIV	GCCGGC	1 cut(s)	304
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	4 cut(s)	423, 486, 569, 578
PaeR7I	CTCGAG	2 cut(s)	56, 70
PdiI	GCCGGC	1 cut(s)	306
PinAI	ACCGGT	1 cut(s)	522
PkrI	GCNGC	8 cut(s)	211, 244, 303, 403, 540, 552, 567, 572
PluTI	GGCGCC	1 cut(s)	571
PpuMI	RGGWCCY	1 cut(s)	484
Psp124BI	GAGCTC	1 cut(s)	285
Psp5II	RGGWCCY	1 cut(s)	484
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	4 cut(s)	423, 486, 569, 578
PspOMI	GGGCCC	1 cut(s)	421
PspPI	GGNCC	5 cut(s)	96, 361, 421, 422, 484
PspPPI	RGGWCCY	1 cut(s)	484
PspXI	VCTCGAGB	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	576
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	559
SacI	GAGCTC	1 cut(s)	285
SacII	CCGCGG	1 cut(s)	187
SatI	GCNGC	8 cut(s)	210, 243, 302, 402, 539, 551, 566, 571
Sau3AI	GATC	4 cut(s)	38, 255, 407, 576
Sau96I	GGNCC	5 cut(s)	96, 361, 421, 422, 484
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	4 cut(s)	285, 329, 425, 498
SfoI	GGCGCC	1 cut(s)	569
Sfr274I	CTCGAG	2 cut(s)	56, 70
Sfr303I	CCGCGG	1 cut(s)	187
SgrBI	CCGCGG	1 cut(s)	187
SinI	GGWCC	2 cut(s)	96, 484
SlaI	CTCGAG	2 cut(s)	56, 70
SmiMI	CAYNNNNRTG	1 cut(s)	559
SmlI	CTYRAG	2 cut(s)	56, 70
SmoI	CTYRAG	2 cut(s)	56, 70
SspDI	GGCGCC	1 cut(s)	567
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	532
TaiI	ACGT	2 cut(s)	293, 434
TaqI	TCGA	5 cut(s)	57, 71, 87, 129, 417
TauI	GCSGC	5 cut(s)	212, 304, 541, 568, 573
TseI	GCWGC	3 cut(s)	242, 401, 550
VpaK11BI	GGWCC	2 cut(s)	96, 484
XhoI	CTCGAG	2 cut(s)	56, 70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.