Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007703

Physical Location & Seq

Genomic Coordinates Reverse (-)

26918765 .. 26920179

Gene Structure 1415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G67450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCTCTCGAGACTCTCAATTCTCCAACAGCTACCACCACCGCTCGGCCTCTTCTCCGGTATCGTGAAGAAATGGAGCCTGAGAATCTCGAGCAATGGGCTAAAAGAAAACGAACAAAACGTCAACGTTTTGATCACGGTCATCAGAATCAAGAAACGAACAAGAACCTTCCTTCTGAAGAAGAGTATCTCGCTCTTTGTCTCCTCATGCTCGCTCGTGGCTCCGCCGTACAATCTCCTCCTCTTCCTCCTCTACCGTCACGTGCGTCACCGTCCGATCACCGAGATTACAAGTGTACGGTCTGTGGGAAGTCCTTTTCGTCATACCAAGCCTTAGGTGGACACAAGACGAGTCACCGGAAACCGACGAACACTAGTATCACTTCCGGTAACCAAGAACTGTCTAATAACAGTCACAGTAACAGCGGTTCCGTTGTTATTAACGTTACCGTGAACACTGGTAACGGTGTTAGTCAAAGCGGAAAGATTCACACTTGCTCAATCTGTTTCAAGTCGTTTGCGTCTGGTCAAGCCTTAGGTGGACACAAACGGTGTCACTATGACGGTGGCAACAACGGTAACGGTAACGGAAGTAGCAGCAACAGCGTAGAACTCGTCGCTGGTAGTGACGTCAGCGATGTTGATAATGAGAGATGGTCCGAAGAAAGTGCGATCGGTGGCCACCGTGGATTTGACCTAAACTTACCGGCTGATCAAGTCTCAGTGACGACTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

245

Amino Acids

26.47

Weight (kDa)

7.7

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	97 - 122	3e-14	C2H2-type zinc finger
zf-C2H2_6	PF13912	164 - 188	6.6e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27730 AT3G49930 AT5G04340 AT5G67450
fragaria_vesca	FvH4_2g33250
malus_domestica	MD01G1041900.v1.1 MD03G1122300.v1.1 MD08G1086500.v1.1 MD15G1071400.v1.1
prunus_persica	Prupe.1G424300_v2.0.a1
pyrus_communis	pycom08g07100 pycom15g06720
rosa_chinensis	RchiOBHm_Chr6g0309391
rosa_laevigata	RLG00000010570
rosa_multiflora	Rmu_co8321009.1_g000001 Rmu_sc0012466.1_g000004 Rmu_sc0017306.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159440
rosa_rugosa	Rorug06G0371800
rosa_samantha	Rh6AG484900 Rh6BG494100 Rh6CG499000 Rh6DG485300
rosa_wichuraiana	Rw6G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	633
AccBSI	CCGCTC	1 cut(s)	44
AciI	CCGC	4 cut(s)	42, 225, 426, 480
AclI	AACGTT	2 cut(s)	127, 444
AcoI	YGGCCR	1 cut(s)	679
AcuI	CTGAAG	1 cut(s)	198
AcvI	CACGTG	1 cut(s)	263
AcyI	GRCGYC	1 cut(s)	630
AfaI	GTAC	2 cut(s)	231, 298
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	511
AhlI	ACTAGT	1 cut(s)	374
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw26I	GTCTC	3 cut(s)	5, 206, 724
Ama87I	CYCGRG	2 cut(s)	8, 89
AoxI	GGCC	2 cut(s)	47, 679
ApeKI	GCWGC	1 cut(s)	597
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AspS9I	GGNCC	1 cut(s)	657
AsuHPI	GGTGA	3 cut(s)	261, 272, 347
AvaI	CYCGRG	2 cut(s)	8, 89
AvaII	GGWCC	1 cut(s)	657
AxyI	CCTNAGG	2 cut(s)	334, 535
BaeI	ACNNNNGTAYC	2 cut(s)	361, 394
BalI	TGGCCA	1 cut(s)	681
BauI	CACGAG	1 cut(s)	216
BbrPI	CACGTG	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	609
BccI	CCATC	1 cut(s)	648
BceAI	ACGGC	1 cut(s)	212
BcgI	CGANNNNNNTGC	2 cut(s)	650, 684
BclI	TGATCA	2 cut(s)	133, 712
BcoDI	GTCTC	3 cut(s)	5, 206, 724
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	1 cut(s)	375
BisI	GCNGC	1 cut(s)	598
BlsI	GCNGC	1 cut(s)	599
Bme18I	GGWCC	1 cut(s)	657
BmeT110I	CYCGRG	2 cut(s)	8, 89
BmgT120I	GGNCC	1 cut(s)	657
BmiI	GGNNCC	3 cut(s)	78, 223, 430
BsaAI	YACGTR	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	630
BsaJI	CCNNGG	1 cut(s)	685
BsaWI	WCCGGW	3 cut(s)	57, 357, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	1 cut(s)	706
Bse1I	ACTGG	1 cut(s)	463
Bse21I	CCTNAGG	2 cut(s)	334, 535
Bse3DI	GCAATG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	685
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	2 cut(s)	72, 735
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	4 cut(s)	194, 228, 231, 240
BseXI	GCAGC	1 cut(s)	609
Bsh1285I	CGRYCG	1 cut(s)	675
BshFI	GGCC	2 cut(s)	49, 681
BsiEI	CGRYCG	1 cut(s)	675
BsiHKCI	CYCGRG	2 cut(s)	8, 89
BsiSI	CCGG	4 cut(s)	58, 358, 387, 707
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	3 cut(s)	5, 206, 724
BsnI	GGCC	2 cut(s)	49, 681
BsoBI	CYCGRG	2 cut(s)	8, 89
Bsp143I	GATC	4 cut(s)	133, 277, 672, 712
BspACI	CCGC	4 cut(s)	42, 225, 426, 480
BspANI	GGCC	2 cut(s)	49, 681
BspCNI	CTCAG	2 cut(s)	73, 734
BspLI	GGNNCC	3 cut(s)	78, 223, 430
BsrBI	CCGCTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	706
BsrI	ACTGG	1 cut(s)	463
BssAI	RCCGGY	1 cut(s)	706
BssECI	CCNNGG	1 cut(s)	685
BssMI	GATC	4 cut(s)	133, 277, 672, 712
BssNI	GRCGYC	1 cut(s)	630
BssSI	CACGAG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	216
Bst6I	CTCTTC	3 cut(s)	57, 177, 249
BstACI	GRCGYC	1 cut(s)	630
BstBAI	YACGTR	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	4 cut(s)	81, 334, 535, 721
BstDSI	CCRYGG	1 cut(s)	685
BstEII	GGTNACC	1 cut(s)	389
BstKTI	GATC	4 cut(s)	136, 280, 675, 715
BstMAI	GTCTC	3 cut(s)	5, 206, 724
BstMBI	GATC	4 cut(s)	133, 277, 672, 712
BstMCI	CGRYCG	1 cut(s)	675
BstMWI	GCNNNNNNNGC	1 cut(s)	603
BstPI	GGTNACC	1 cut(s)	389
BstV1I	GCAGC	1 cut(s)	609
Bsu36I	CCTNAGG	2 cut(s)	334, 535
BsuRI	GGCC	2 cut(s)	49, 681
BtgI	CCRYGG	1 cut(s)	685
BtgZI	GCGATG	1 cut(s)	651
BtsIMutI	CAGTG	2 cut(s)	456, 729
Cac8I	GCNNGC	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	706
Cfr13I	GGNCC	1 cut(s)	657
CseI	GACGC	2 cut(s)	255, 510
Csp6I	GTAC	2 cut(s)	230, 297
CviAII	CATG	1 cut(s)	208
CviQI	GTAC	2 cut(s)	230, 297
DdeI	CTNAG	4 cut(s)	81, 334, 535, 721
DpnI	GATC	4 cut(s)	135, 279, 674, 714
DpnII	GATC	4 cut(s)	133, 277, 672, 712
EaeI	YGGCCR	1 cut(s)	679
Eam1104I	CTCTTC	3 cut(s)	57, 177, 249
EarI	CTCTTC	3 cut(s)	57, 177, 249
EciI	GGCGGA	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	657
Eco57I	CTGAAG	1 cut(s)	198
Eco72I	CACGTG	1 cut(s)	263
Eco81I	CCTNAGG	2 cut(s)	334, 535
Eco88I	CYCGRG	2 cut(s)	8, 89
Eco91I	GGTNACC	1 cut(s)	389
EcoO65I	GGTNACC	1 cut(s)	389
FaeI	CATG	1 cut(s)	211
FaiI	YATR	3 cut(s)	209, 325, 561
FatI	CATG	1 cut(s)	207
FbaI	TGATCA	2 cut(s)	133, 712
Fnu4HI	GCNGC	1 cut(s)	598
Fsp4HI	GCNGC	1 cut(s)	598
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	1 cut(s)	598
HaeIII	GGCC	2 cut(s)	49, 681
HapII	CCGG	4 cut(s)	58, 358, 387, 707
HgaI	GACGC	2 cut(s)	255, 510
Hin1I	GRCGYC	1 cut(s)	630
Hin1II	CATG	1 cut(s)	211
HincII	GTYRAC	1 cut(s)	125
HindII	GTYRAC	1 cut(s)	125
HinfI	GANTC	5 cut(s)	13, 85, 148, 352, 487
HpaII	CCGG	4 cut(s)	58, 358, 387, 707
HphI	GGTGA	3 cut(s)	261, 272, 347
Hpy166II	GTNNAC	5 cut(s)	125, 297, 341, 454, 542
Hpy188I	TCNGA	4 cut(s)	147, 178, 277, 661
Hpy188III	TCNNGA	5 cut(s)	8, 10, 65, 89, 152
Hpy8I	GTNNAC	5 cut(s)	125, 297, 341, 454, 542
Hpy99I	CGWCG	2 cut(s)	370, 620
HpyAV	CCTTC	2 cut(s)	179, 183
HpyCH4IV	ACGT	5 cut(s)	121, 127, 262, 444, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	603
HpyF3I	CTNAG	4 cut(s)	81, 334, 535, 721
HpySE526I	ACGT	5 cut(s)	121, 127, 262, 444, 630
Hsp92I	GRCGYC	1 cut(s)	630
Hsp92II	CATG	1 cut(s)	211
Ksp22I	TGATCA	2 cut(s)	133, 712
Kzo9I	GATC	4 cut(s)	133, 277, 672, 712
LmnI	GCTCC	2 cut(s)	76, 227
LpnPI	CCDG	8 cut(s)	71, 93, 371, 400, 444, 510, 606, 720
Lsp1109I	GCAGC	1 cut(s)	609
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	5 cut(s)	121, 127, 262, 444, 630
MalI	GATC	4 cut(s)	135, 279, 674, 714
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	4 cut(s)	133, 277, 672, 712
MboII	GAAGA	6 cut(s)	44, 80, 191, 194, 236, 674
MlsI	TGGCCA	1 cut(s)	681
MluCI	AATT	1 cut(s)	19
MluNI	TGGCCA	1 cut(s)	681
MlyI	GAGTC	2 cut(s)	7, 361
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	6 cut(s)	60, 215, 249, 252, 258, 261
Mox20I	TGGCCA	1 cut(s)	681
MscI	TGGCCA	1 cut(s)	681
MseI	TTAA	2 cut(s)	441, 736
Msp20I	TGGCCA	1 cut(s)	681
MspA1I	CMGCKG	1 cut(s)	426
MspI	CCGG	4 cut(s)	58, 358, 387, 707
MwoI	GCNNNNNNNGC	1 cut(s)	603
NdeII	GATC	4 cut(s)	133, 277, 672, 712
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	3 cut(s)	78, 223, 430
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	7 cut(s)	258, 267, 353, 413, 554, 626, 724
PaeR7I	CTCGAG	2 cut(s)	8, 89
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PfeI	GAWTC	3 cut(s)	85, 148, 487
PkrI	GCNGC	1 cut(s)	599
Ple19I	CGATCG	1 cut(s)	675
PleI	GAGTC	2 cut(s)	7, 360
PmaCI	CACGTG	1 cut(s)	263
PmlI	CACGTG	1 cut(s)	263
PpsI	GAGTC	2 cut(s)	7, 360
Ppu21I	YACGTR	1 cut(s)	263
Psp1406I	AACGTT	2 cut(s)	127, 444
PspCI	CACGTG	1 cut(s)	263
PspEI	GGTNACC	1 cut(s)	389
PspN4I	GGNNCC	3 cut(s)	78, 223, 430
PspPI	GGNCC	1 cut(s)	657
PsrI	GAACNNNNNNTAC	2 cut(s)	412, 444
PvuI	CGATCG	1 cut(s)	675
RsaI	GTAC	2 cut(s)	231, 298
RsaNI	GTAC	2 cut(s)	230, 297
SaqAI	TTAA	2 cut(s)	441, 736
SatI	GCNGC	1 cut(s)	598
Sau3AI	GATC	4 cut(s)	133, 277, 672, 712
Sau96I	GGNCC	1 cut(s)	657
SchI	GAGTC	2 cut(s)	7, 361
Sfr274I	CTCGAG	2 cut(s)	8, 89
SinI	GGWCC	1 cut(s)	657
SlaI	CTCGAG	2 cut(s)	8, 89
SmlI	CTYRAG	2 cut(s)	8, 89
SmoI	CTYRAG	2 cut(s)	8, 89
SpeI	ACTAGT	1 cut(s)	374
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	4 cut(s)	42, 225, 426, 480
SspMI	CTAG	1 cut(s)	375
TaiI	ACGT	5 cut(s)	124, 130, 265, 447, 633
TaqI	TCGA	2 cut(s)	9, 90
TasI	AATT	1 cut(s)	19
TfiI	GAWTC	3 cut(s)	85, 148, 487
Tru1I	TTAA	2 cut(s)	441, 736
Tru9I	TTAA	2 cut(s)	441, 736
TscAI	CASTG	2 cut(s)	463, 729
TseFI	GTSAC	7 cut(s)	258, 267, 353, 413, 554, 626, 724
TseI	GCWGC	1 cut(s)	597
Tsp45I	GTSAC	7 cut(s)	258, 267, 353, 413, 554, 626, 724
TspGWI	ACGGA	2 cut(s)	421, 603
TspRI	CASTG	2 cut(s)	463, 729
VpaK11BI	GGWCC	1 cut(s)	657
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XhoI	CTCGAG	2 cut(s)	8, 89
XspI	CTAG	1 cut(s)	375
ZraI	GACGTC	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.