FvH4_2g33250

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
24990585 .. 24991940
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33250.t1

Sequence Viewer

Length: 798 bp
ATGGCTTTGGAAGCTCTCAACTCTCCCACCGCCGCCGGCCAAGGCTTTCACTTTGATGAGCCCAAGCTCCAGTACTCGGAGCCATGGACCAAGCGCAAGCGCTCCAAGCGTCCACGAAGCGTCGAGCAGGCGGCCGCTCCGGTCTCCGAGGAGGAGTATCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCGGTAACAGAGGACCACCCGTCACCACCGCCGCCGCCGCCTCAAACCCAATTCCGGTAACTGAACAGGCCACGTCAGCGCCGGCCAAGGAGAATAACCTAGAGCTCAGTTACAAGTGCTCTGTTTGTGACAAGGCTTTTAATTCCTACCAGGCTCTGGGTGGACACAAGGCCAGCCACAGGAAAGGGTCTTCCGCCGTCACCGGCGGTGAAGGACCCTCCACGTCGTCGACTACCACCACCACATCCGCTGCGACTGTCTCAAACGCCTCAGGTAGGTCCCACGAGTGCTCCATCTGCCACAAGTCTTTCCCCACCGGCCAGGCCTTGGGAGGGCACAAGCGTTGCCACTACGAGGGCGGCGTCACCGCCACCAAGTCCGCCGCAACCACCACCACCAGCGCCGTGACCACCTCGGAGGGAGTGGGGTCAACCACTCACACCGTCAGCCAACAACACCGTGAATCGTTTGATCTGAACTTACCGGCCTTCCCGGAGCCTTTGTCGCGAAACTTCTTCATGTCCGGCGACGACGAGGTGGAAAGCCCTCATCCGACGAAGAAGCCCCGTCTGTTCATGAGCCCCAAAGTTGAGATATCACTCAATTAG

Protein Analysis

266

Amino Acids

28.05

Weight (kDa)

8.5

Isoelectric Point (pI)

59.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 101 - 125 3.4e-13 C2H2-type zinc finger
zf-C2H2_6 PF13912 158 - 181 7.4e-12 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 346, 517
AccBSI CCGCTC 1 cut(s) 137
AccI GTMKAC 1 cut(s) 419
AccII CGCG 2 cut(s) 189, 697
AcoI YGGCCR 4 cut(s) 37, 132, 273, 508
AcyI GRCGYC 1 cut(s) 552
AfaI GTAC 1 cut(s) 74
AfeI AGCGCT 1 cut(s) 101
AfiI CCNNNNNNNGG 8 cut(s) 76, 244, 346, 369, 465, 517, 522, 544
AhdI GACNNNNNGTC 1 cut(s) 209
AjiI CACGTC 2 cut(s) 264, 414
AjnI CCWGG 2 cut(s) 339, 510
AluBI AGCT 3 cut(s) 14, 67, 295
AluI AGCT 3 cut(s) 14, 67, 295
Alw21I GWGCWC 3 cut(s) 297, 311, 482
Alw26I GTCTC 2 cut(s) 148, 454
AlwNI CAGNNNCTG 1 cut(s) 346
Aor51HI AGCGCT 1 cut(s) 101
AoxI GGCC 8 cut(s) 37, 132, 258, 273, 360, 508, 513, 675
ApeKI GCWGC 1 cut(s) 440
AspLEI GCGC 4 cut(s) 96, 102, 271, 593
AspS9I GGNCC 4 cut(s) 87, 203, 404, 468
AsuC2I CCSGG 1 cut(s) 683
AsuHPI GGTGA 4 cut(s) 205, 382, 410, 547
AvaII GGWCC 4 cut(s) 87, 203, 404, 468
AxyI CCTNAGG 1 cut(s) 460
BaeGI GKGCMC 1 cut(s) 528
BanII GRGCYC 3 cut(s) 63, 297, 773
BauI CACGAG 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 372
Bbv12I GWGCWC 3 cut(s) 297, 311, 482
BbvI GCAGC 1 cut(s) 427
BccI CCATC 1 cut(s) 491
BceAI ACGGC 2 cut(s) 371, 578
BciT130I CCWGG 2 cut(s) 341, 512
BcnI CCSGG 1 cut(s) 683
BcoDI GTCTC 2 cut(s) 148, 454
BfaI CTAG 1 cut(s) 290
BfoI RGCGCY 3 cut(s) 103, 272, 594
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 3 cut(s) 341, 512, 683
Bme18I GGWCC 4 cut(s) 87, 203, 404, 468
BmeRI GACNNNNNGTC 1 cut(s) 209
BmgBI CACGTC 2 cut(s) 264, 414
BmgT120I GGNCC 4 cut(s) 87, 203, 404, 468
BmiI GGNNCC 4 cut(s) 81, 406, 470, 687
BmrFI CCNGG 3 cut(s) 341, 512, 683
BpiI GAAGAC 1 cut(s) 372
BpmI CTGGAG 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 683
BsaHI GRCGYC 1 cut(s) 552
BsaI GGTCTC 1 cut(s) 148
BsaJI CCNNGG 6 cut(s) 40, 83, 147, 276, 516, 603
BsaWI WCCGGW 2 cut(s) 139, 244
BsaXI ACNNNNNCTCC 4 cut(s) 464, 494, 677, 707
Bsc4I CCNNNNNNNGG 8 cut(s) 76, 244, 346, 369, 465, 517, 522, 544
Bse118I RCCGGY 5 cut(s) 35, 271, 392, 506, 673
Bse1I ACTGG 1 cut(s) 70
Bse21I CCTNAGG 1 cut(s) 460
BseBI CCWGG 2 cut(s) 341, 512
BseDI CCNNGG 6 cut(s) 40, 83, 147, 276, 516, 603
BseGI GGATG 2 cut(s) 434, 739
BseLI CCNNNNNNNGG 8 cut(s) 76, 244, 346, 369, 465, 517, 522, 544
BseMII CTCAG 2 cut(s) 310, 474
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 2 cut(s) 164, 167
BseSI GKGCMC 1 cut(s) 528
BseX3I CGGCCG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 427
Bsh1236I CGCG 2 cut(s) 189, 697
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 8 cut(s) 39, 134, 260, 275, 362, 510, 515, 677
BsiEI CGRYCG 1 cut(s) 135
BsiHKAI GWGCWC 3 cut(s) 297, 311, 482
BsiSI CCGG 9 cut(s) 36, 140, 245, 272, 393, 507, 674, 683, 714
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 8 cut(s) 76, 244, 346, 369, 465, 517, 522, 544
BsmAI GTCTC 2 cut(s) 148, 454
BsmFI GGGAC 1 cut(s) 454
BsnI GGCC 8 cut(s) 39, 134, 260, 275, 362, 510, 515, 677
Bso31I GGTCTC 1 cut(s) 148
Bsp1286I GDGCHC 6 cut(s) 63, 297, 311, 482, 528, 773
Bsp143I GATC 1 cut(s) 661
Bsp19I CCATGG 1 cut(s) 83
Bsp68I TCGCGA 1 cut(s) 697
BspANI GGCC 8 cut(s) 39, 134, 260, 275, 362, 510, 515, 677
BspCNI CTCAG 2 cut(s) 309, 473
BspFNI CGCG 2 cut(s) 189, 697
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 4 cut(s) 81, 406, 470, 687
BspTNI GGTCTC 1 cut(s) 148
BsrBI CCGCTC 1 cut(s) 137
BsrFI RCCGGY 5 cut(s) 35, 271, 392, 506, 673
BsrI ACTGG 1 cut(s) 70
BssAI RCCGGY 5 cut(s) 35, 271, 392, 506, 673
BssECI CCNNGG 6 cut(s) 40, 83, 147, 276, 516, 603
BssMI GATC 1 cut(s) 661
BssNI GRCGYC 1 cut(s) 552
BssSI CACGAG 1 cut(s) 473
BssT1I CCWWGG 4 cut(s) 40, 83, 276, 516
Bst2BI CACGAG 1 cut(s) 473
Bst2UI CCWGG 2 cut(s) 341, 512
Bst4CI ACNGT 3 cut(s) 448, 634, 650
BstACI GRCGYC 1 cut(s) 552
BstC8I GCNNGC 7 cut(s) 37, 98, 129, 183, 187, 273, 364
BstDEI CTNAG 2 cut(s) 296, 460
BstDSI CCRYGG 1 cut(s) 83
BstENI CCTNNNNNAGG 1 cut(s) 463
BstF5I GGATG 2 cut(s) 434, 739
BstFNI CGCG 2 cut(s) 189, 697
BstH2I RGCGCY 3 cut(s) 103, 272, 594
BstHHI GCGC 4 cut(s) 96, 102, 271, 593
BstKTI GATC 1 cut(s) 664
BstMAI GTCTC 2 cut(s) 148, 454
BstMBI GATC 1 cut(s) 661
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 6 cut(s) 11, 106, 227, 266, 486, 694
BstNI CCWGG 2 cut(s) 341, 512
BstSCI CCNGG 3 cut(s) 339, 510, 681
BstSLI GKGCMC 1 cut(s) 528
BstUI CGCG 2 cut(s) 189, 697
BstV1I GCAGC 1 cut(s) 427
BstV2I GAAGAC 1 cut(s) 372
BstZI CGGCCG 1 cut(s) 132
Bsu36I CCTNAGG 1 cut(s) 460
BsuRI GGCC 8 cut(s) 39, 134, 260, 275, 362, 510, 515, 677
BtgI CCRYGG 1 cut(s) 83
BtrI CACGTC 2 cut(s) 264, 414
BtsCI GGATG 2 cut(s) 434, 739
BtuMI TCGCGA 1 cut(s) 697
Cac8I GCNNGC 7 cut(s) 37, 98, 129, 183, 187, 273, 364
CaiI CAGNNNCTG 1 cut(s) 346
CciI TCATGA 1 cut(s) 765
CciNI GCGGCCGC 1 cut(s) 132
CfoI GCGC 4 cut(s) 96, 102, 271, 593
Cfr10I RCCGGY 5 cut(s) 35, 271, 392, 506, 673
Cfr13I GGNCC 4 cut(s) 87, 203, 404, 468
CseI GACGC 3 cut(s) 98, 109, 541
Csp6I GTAC 1 cut(s) 73
CviAII CATG 4 cut(s) 84, 178, 709, 766
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 2 cut(s) 296, 460
DpnI GATC 1 cut(s) 663
DpnII GATC 1 cut(s) 661
DriI GACNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 4 cut(s) 37, 132, 273, 508
EagI CGGCCG 1 cut(s) 132
Eam1105I GACNNNNNGTC 1 cut(s) 209
EciI GGCGGA 2 cut(s) 373, 559
Ecl136II GAGCTC 1 cut(s) 295
EclXI CGGCCG 1 cut(s) 132
Eco130I CCWWGG 4 cut(s) 40, 83, 276, 516
Eco147I AGGCCT 1 cut(s) 515
Eco24I GRGCYC 3 cut(s) 63, 297, 773
Eco31I GGTCTC 1 cut(s) 148
Eco32I GATATC 1 cut(s) 786
Eco47I GGWCC 4 cut(s) 87, 203, 404, 468
Eco47III AGCGCT 1 cut(s) 101
Eco52I CGGCCG 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 295
Eco81I CCTNAGG 1 cut(s) 460
EcoICRI GAGCTC 1 cut(s) 295
EcoNI CCTNNNNNAGG 1 cut(s) 463
EcoO109I RGGNCCY 2 cut(s) 404, 468
EcoRII CCWGG 2 cut(s) 339, 510
EcoRV GATATC 1 cut(s) 786
EcoT14I CCWWGG 4 cut(s) 40, 83, 276, 516
EcoT38I GRGCYC 3 cut(s) 63, 297, 773
ErhI CCWWGG 4 cut(s) 40, 83, 276, 516
FaeI CATG 4 cut(s) 87, 181, 712, 769
FaiI YATR 4 cut(s) 85, 179, 710, 767
FaqI GGGAC 1 cut(s) 454
FatI CATG 4 cut(s) 83, 177, 708, 765
FblI GTMKAC 1 cut(s) 419
FokI GGATG 2 cut(s) 421, 726
FriOI GRGCYC 3 cut(s) 63, 297, 773
FspBI CTAG 1 cut(s) 290
GlaI GCGC 4 cut(s) 95, 101, 270, 592
GsuI CTGGAG 1 cut(s) 53
HaeII RGCGCY 3 cut(s) 103, 272, 594
HaeIII GGCC 8 cut(s) 39, 134, 260, 275, 362, 510, 515, 677
HapII CCGG 9 cut(s) 36, 140, 245, 272, 393, 507, 674, 683, 714
HgaI GACGC 3 cut(s) 98, 109, 541
HhaI GCGC 4 cut(s) 96, 102, 271, 593
Hin1I GRCGYC 1 cut(s) 552
Hin1II CATG 4 cut(s) 87, 181, 712, 769
Hin6I GCGC 4 cut(s) 94, 100, 269, 591
HinP1I GCGC 4 cut(s) 94, 100, 269, 591
HincII GTYRAC 2 cut(s) 420, 621
HindII GTYRAC 2 cut(s) 420, 621
HinfI GANTC 1 cut(s) 653
HpaII CCGG 9 cut(s) 36, 140, 245, 272, 393, 507, 674, 683, 714
HphI GGTGA 4 cut(s) 205, 382, 410, 547
Hpy166II GTNNAC 4 cut(s) 113, 353, 420, 621
Hpy188I TCNGA 5 cut(s) 79, 148, 607, 666, 744
Hpy188III TCNNGA 2 cut(s) 696, 766
Hpy8I GTNNAC 4 cut(s) 113, 353, 420, 621
Hpy99I CGWCG 6 cut(s) 125, 418, 421, 722, 725, 748
HpyAV CCTTC 2 cut(s) 395, 688
HpyCH4III ACNGT 3 cut(s) 448, 634, 650
HpyCH4IV ACGT 2 cut(s) 263, 413
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 106, 227, 266, 486, 694
HpyF3I CTNAG 2 cut(s) 296, 460
HpySE526I ACGT 2 cut(s) 263, 413
Hsp92I GRCGYC 1 cut(s) 552
Hsp92II CATG 4 cut(s) 87, 181, 712, 769
HspAI GCGC 4 cut(s) 94, 100, 269, 591
KroI GCCGGC 2 cut(s) 35, 271
KroNI GCCGGC 2 cut(s) 37, 273
Kzo9I GATC 1 cut(s) 661
LmnI GCTCC 6 cut(s) 72, 79, 107, 142, 485, 685
Lsp1109I GCAGC 1 cut(s) 427
MaeI CTAG 1 cut(s) 290
MaeII ACGT 2 cut(s) 263, 413
MaeIII GTNAC 8 cut(s) 194, 211, 247, 299, 317, 388, 553, 595
MalI GATC 1 cut(s) 663
MbiI CCGCTC 1 cut(s) 137
MboI GATC 1 cut(s) 661
MboII GAAGA 3 cut(s) 372, 697, 760
MhlI GDGCHC 6 cut(s) 63, 297, 311, 482, 528, 773
MluCI AATT 3 cut(s) 240, 331, 793
MmeI TCCRAC 1 cut(s) 767
MroNI GCCGGC 2 cut(s) 35, 271
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 54
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 9 cut(s) 36, 140, 245, 272, 393, 507, 674, 683, 714
MspR9I CCNGG 3 cut(s) 341, 512, 683
MvaI CCWGG 2 cut(s) 341, 512
MvnI CGCG 2 cut(s) 189, 697
MwoI GCNNNNNNNGC 6 cut(s) 11, 106, 227, 266, 486, 694
NaeI GCCGGC 2 cut(s) 37, 273
NciI CCSGG 1 cut(s) 683
NcoI CCATGG 1 cut(s) 83
NdeII GATC 1 cut(s) 661
NgoMIV GCCGGC 2 cut(s) 35, 271
NlaIII CATG 4 cut(s) 87, 181, 712, 769
NlaIV GGNNCC 4 cut(s) 81, 406, 470, 687
NmuCI GTSAC 5 cut(s) 211, 317, 388, 553, 595
NotI GCGGCCGC 1 cut(s) 132
NruI TCGCGA 1 cut(s) 697
PagI TCATGA 1 cut(s) 765
PceI AGGCCT 1 cut(s) 515
PcsI WCGNNNNNNNCGW 1 cut(s) 549
PdiI GCCGGC 2 cut(s) 37, 273
PfeI GAWTC 1 cut(s) 653
PflMI CCANNNNNTGG 2 cut(s) 346, 517
PfoI TCCNGGA 1 cut(s) 681
PpuMI RGGWCCY 2 cut(s) 404, 468
Psp124BI GAGCTC 1 cut(s) 297
Psp5II RGGWCCY 2 cut(s) 404, 468
Psp6I CCWGG 2 cut(s) 339, 510
PspGI CCWGG 2 cut(s) 339, 510
PspN4I GGNNCC 4 cut(s) 81, 406, 470, 687
PspPI GGNCC 4 cut(s) 87, 203, 404, 468
PspPPI RGGWCCY 2 cut(s) 404, 468
PstNI CAGNNNCTG 1 cut(s) 346
RruI TCGCGA 1 cut(s) 697
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 54
SacI GAGCTC 1 cut(s) 297
SalI GTCGAC 1 cut(s) 418
SaqAI TTAA 1 cut(s) 330
Sau3AI GATC 1 cut(s) 661
Sau96I GGNCC 4 cut(s) 87, 203, 404, 468
ScaI AGTACT 1 cut(s) 74
ScrFI CCNGG 3 cut(s) 341, 512, 683
SduI GDGCHC 6 cut(s) 63, 297, 311, 482, 528, 773
SgrAI CRCCGGYG 1 cut(s) 392
SinI GGWCC 4 cut(s) 87, 203, 404, 468
SmiMI CAYNNNNRTG 1 cut(s) 54
Sse9I AATT 3 cut(s) 240, 331, 793
SseBI AGGCCT 1 cut(s) 515
SspMI CTAG 1 cut(s) 290
SstI GAGCTC 1 cut(s) 297
StuI AGGCCT 1 cut(s) 515
StyD4I CCNGG 3 cut(s) 339, 510, 681
StyI CCWWGG 4 cut(s) 40, 83, 276, 516
TaaI ACNGT 3 cut(s) 448, 634, 650
TaiI ACGT 2 cut(s) 266, 416
TaqI TCGA 2 cut(s) 123, 419
TasI AATT 3 cut(s) 240, 331, 793
TatI WGTACW 1 cut(s) 72
TauI GCSGC 9 cut(s) 35, 134, 137, 192, 224, 227, 230, 552, 575
TfiI GAWTC 1 cut(s) 653
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseFI GTSAC 5 cut(s) 211, 317, 388, 553, 595
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 5 cut(s) 211, 317, 388, 553, 595
TspDTI ATGAA 2 cut(s) 697, 754
Van91I CCANNNNNTGG 2 cut(s) 346, 517
VpaK11BI GGWCC 4 cut(s) 87, 203, 404, 468
XagI CCTNNNNNAGG 1 cut(s) 463
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 419
XspI CTAG 1 cut(s) 290
ZrmI AGTACT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.