Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007703

Physical Location & Seq

Genomic Coordinates Forward (+)

4896621 .. 4897463

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1071400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCTCTGCAAGCTCTCAACTCGCCAACAGCCGCCGGAGCCTCTCCTTTCCCATTTGAGAACGAGGCCTCCAGCCTCGGCTATGCCGAGCCGTGGACCAAACGCAAGCGTTCCAAGCGTCCACGCCTCGACACCCCTCACTCCGAGGAGGAGTATCTTGCCATCTGCCTCATCATGCTTGCCCGCGGAAACAGAGGTGGAGACCTCGCCTCTACTACCGCCACCGCCGCCACAGCCACTAAAGAAACAAACTCCGCCGCCTCACACCAGATCATCACTCAATCCCCTTCTATGGAGCCCTCCACGTCAGCATCTCCGCCGGTTAAGCTGAGCTACAAGTGCTCTGTTTGCGACAAGGGCTTCTCTTCCTACCAGGCGCTCGGAGGACACAAGGCCAGCCACCGGAAAGGCTCTGCAGCTGGATCGGCCATCGACGGCCCGTCCACGTCATCAACCACAACAACCTCTGCCGCGGCCACCGCCACCGCTTCCGGTAGGTCCCACGAATGCTCCATCTGCCACAAGTCTTTCCCCACCGGTCAAGCCTTGGGCGGCCACAAGCGCTGCCACTACGATGGCGGCGCCGCCGGATCCACAGCCACCACCACCGCTACCACGAGCGCTATAACTTCCTCTGAGGGAGTTGGGTCAACTTCTCACGCGGTCAGCCACGGCCACCCCCGAGAGACGTTTGACCTGAACCTGCCGGCGTTGCCCGAGTTCTCCCGCGACTTCTTCATCTCCGGCGAGGACGAAGTGGAGAGCCCCCACCCGACGAAGAAGCCCAGGCTTCTACTGATGATGAAGCCCAAAACCGAGACTTCACAGGACCAACAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

281

Amino Acids

29.26

Weight (kDa)

8.2

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	112 - 136	8.7e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	168 - 192	4.4e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27730 AT3G49930 AT5G04340 AT5G67450
fragaria_vesca	FvH4_2g33250
malus_domestica	MD01G1041900.v1.1 MD03G1122300.v1.1 MD08G1086500.v1.1 MD15G1071400.v1.1
prunus_persica	Prupe.1G424300_v2.0.a1
pyrus_communis	pycom08g07100 pycom15g06720
rosa_chinensis	RchiOBHm_Chr6g0309391
rosa_laevigata	RLG00000010570
rosa_multiflora	Rmu_co8321009.1_g000001 Rmu_sc0012466.1_g000004 Rmu_sc0017306.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159440
rosa_rugosa	Rorug06G0371800
rosa_samantha	Rh6AG484900 Rh6BG494100 Rh6CG499000 Rh6DG485300
rosa_wichuraiana	Rw6G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	711
AccB1I	GGYRCC	1 cut(s)	581
AccII	CGCG	4 cut(s)	186, 473, 662, 729
AclWI	GGATC	3 cut(s)	430, 585, 598
AcoI	YGGCCR	4 cut(s)	426, 474, 553, 673
AcyI	GRCGYC	1 cut(s)	582
AfeI	AGCGCT	2 cut(s)	563, 622
AfiI	CCNNNNNNNGG	3 cut(s)	93, 292, 402
AgeI	ACCGGT	1 cut(s)	536
AhdI	GACNNNNNGTC	1 cut(s)	439
AjiI	CACGTC	2 cut(s)	306, 447
AjnI	CCWGG	2 cut(s)	372, 785
AloI	GAACNNNNNNTCC	2 cut(s)	53, 85
AluBI	AGCT	4 cut(s)	14, 328, 333, 419
AluI	AGCT	4 cut(s)	14, 328, 333, 419
Alw21I	GWGCWC	1 cut(s)	344
Alw26I	GTCTC	3 cut(s)	195, 680, 812
AlwI	GGATC	3 cut(s)	430, 585, 598
Ama87I	CYCGRG	2 cut(s)	681, 716
Aor51HI	AGCGCT	2 cut(s)	563, 622
AoxI	GGCC	7 cut(s)	66, 393, 426, 436, 474, 553, 673
ApeKI	GCWGC	2 cut(s)	416, 564
AsiGI	ACCGGT	1 cut(s)	536
AspLEI	GCGC	4 cut(s)	379, 564, 584, 623
AspS9I	GGNCC	4 cut(s)	96, 437, 498, 829
AvaI	CYCGRG	2 cut(s)	681, 716
AvaII	GGWCC	3 cut(s)	96, 498, 829
BamHI	GGATCC	1 cut(s)	590
BanI	GGYRCC	1 cut(s)	581
BanII	GRGCYC	2 cut(s)	300, 767
BauI	CACGAG	1 cut(s)	616
Bbv12I	GWGCWC	1 cut(s)	344
BbvI	GCAGC	2 cut(s)	428, 551
BccI	CCATC	4 cut(s)	170, 437, 521, 569
BceAI	ACGGC	3 cut(s)	76, 451, 688
BcgI	CGANNNNNNTGC	2 cut(s)	405, 439
BciT130I	CCWGG	2 cut(s)	374, 787
BcoDI	GTCTC	3 cut(s)	195, 680, 812
BfmI	CTRYAG	1 cut(s)	414
BfoI	RGCGCY	4 cut(s)	380, 565, 585, 624
BfuAI	ACCTGC	1 cut(s)	711
BlpI	GCTNAGC	1 cut(s)	329
Bme1390I	CCNGG	2 cut(s)	374, 787
Bme18I	GGWCC	3 cut(s)	96, 498, 829
BmeRI	GACNNNNNGTC	1 cut(s)	439
BmeT110I	CYCGRG	2 cut(s)	681, 716
BmgBI	CACGTC	2 cut(s)	306, 447
BmgT120I	GGNCC	4 cut(s)	96, 437, 498, 829
BmiI	GGNNCC	5 cut(s)	40, 297, 500, 583, 592
BmrFI	CCNGG	2 cut(s)	374, 787
BmsI	GCATC	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	55
Bpu1102I	GCTNAGC	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	8 cut(s)	76, 92, 144, 184, 471, 546, 670, 785
BsaWI	WCCGGW	3 cut(s)	402, 491, 536
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 494, 524
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 292, 402
Bse118I	RCCGGY	3 cut(s)	319, 536, 706
BseBI	CCWGG	2 cut(s)	374, 787
BseDI	CCNNGG	8 cut(s)	76, 92, 144, 184, 471, 546, 670, 785
BseLI	CCNNNNNNNGG	3 cut(s)	93, 292, 402
BseMII	CTCAG	2 cut(s)	320, 627
BseRI	GAGGAG	2 cut(s)	161, 164
BseXI	GCAGC	2 cut(s)	428, 551
Bsh1236I	CGCG	4 cut(s)	186, 473, 662, 729
BshFI	GGCC	7 cut(s)	68, 395, 428, 438, 476, 555, 675
BshNI	GGYRCC	1 cut(s)	581
BshTI	ACCGGT	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	344
BsiHKCI	CYCGRG	2 cut(s)	681, 716
BsiSI	CCGG	8 cut(s)	36, 320, 403, 492, 537, 588, 707, 744
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	3 cut(s)	93, 292, 402
BsmAI	GTCTC	3 cut(s)	195, 680, 812
BsmBI	CGTCTC	1 cut(s)	680
BsmFI	GGGAC	1 cut(s)	484
BsmI	GAATGC	1 cut(s)	512
BsnI	GGCC	7 cut(s)	68, 395, 428, 438, 476, 555, 675
Bso31I	GGTCTC	1 cut(s)	195
BsoBI	CYCGRG	2 cut(s)	681, 716
Bsp1286I	GDGCHC	3 cut(s)	300, 344, 767
Bsp143I	GATC	3 cut(s)	270, 422, 590
Bsp1720I	GCTNAGC	1 cut(s)	329
BspANI	GGCC	7 cut(s)	68, 395, 428, 438, 476, 555, 675
BspCNI	CTCAG	2 cut(s)	321, 628
BspFNI	CGCG	4 cut(s)	186, 473, 662, 729
BspLI	GGNNCC	5 cut(s)	40, 297, 500, 583, 592
BspMAI	CTGCAG	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	711
BspPI	GGATC	3 cut(s)	430, 585, 598
BspT107I	GGYRCC	1 cut(s)	581
BspTNI	GGTCTC	1 cut(s)	195
BsrFI	RCCGGY	3 cut(s)	319, 536, 706
BssAI	RCCGGY	3 cut(s)	319, 536, 706
BssECI	CCNNGG	8 cut(s)	76, 92, 144, 184, 471, 546, 670, 785
BssMI	GATC	3 cut(s)	270, 422, 590
BssNI	GRCGYC	1 cut(s)	582
BssSI	CACGAG	1 cut(s)	616
BssT1I	CCWWGG	1 cut(s)	546
Bst2BI	CACGAG	1 cut(s)	616
Bst2UI	CCWGG	2 cut(s)	374, 787
Bst6I	CTCTTC	1 cut(s)	370
BstACI	GRCGYC	1 cut(s)	582
BstC8I	GCNNGC	6 cut(s)	12, 107, 180, 184, 397, 708
BstDEI	CTNAG	2 cut(s)	329, 636
BstDSI	CCRYGG	4 cut(s)	92, 184, 471, 670
BstFNI	CGCG	4 cut(s)	186, 473, 662, 729
BstH2I	RGCGCY	4 cut(s)	380, 565, 585, 624
BstHHI	GCGC	4 cut(s)	379, 564, 584, 623
BstKTI	GATC	3 cut(s)	273, 425, 593
BstMAI	GTCTC	3 cut(s)	195, 680, 812
BstMBI	GATC	3 cut(s)	270, 422, 590
BstNI	CCWGG	2 cut(s)	374, 787
BstSCI	CCNGG	2 cut(s)	372, 785
BstSFI	CTRYAG	1 cut(s)	414
BstUI	CGCG	4 cut(s)	186, 473, 662, 729
BstV1I	GCAGC	2 cut(s)	428, 551
BstX2I	RGATCY	1 cut(s)	590
BstXI	CCANNNNNNTGG	1 cut(s)	575
BstYI	RGATCY	1 cut(s)	590
BsuRI	GGCC	7 cut(s)	68, 395, 428, 438, 476, 555, 675
BtgI	CCRYGG	4 cut(s)	92, 184, 471, 670
BtrI	CACGTC	2 cut(s)	306, 447
BveI	ACCTGC	1 cut(s)	711
Cac8I	GCNNGC	6 cut(s)	12, 107, 180, 184, 397, 708
CfoI	GCGC	4 cut(s)	379, 564, 584, 623
Cfr10I	RCCGGY	3 cut(s)	319, 536, 706
Cfr13I	GGNCC	4 cut(s)	96, 437, 498, 829
Cfr42I	CCGCGG	2 cut(s)	187, 474
CseI	GACGC	1 cut(s)	107
CspAI	ACCGGT	1 cut(s)	536
CviAII	CATG	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	329, 636
DinI	GGCGCC	1 cut(s)	583
DpnI	GATC	3 cut(s)	272, 424, 592
DpnII	GATC	3 cut(s)	270, 422, 590
DriI	GACNNNNNGTC	1 cut(s)	439
EaeI	YGGCCR	4 cut(s)	426, 474, 553, 673
Eam1104I	CTCTTC	1 cut(s)	370
Eam1105I	GACNNNNNGTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	370
EciI	GGCGGA	2 cut(s)	244, 306
Eco130I	CCWWGG	1 cut(s)	546
Eco147I	AGGCCT	1 cut(s)	68
Eco24I	GRGCYC	2 cut(s)	300, 767
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	3 cut(s)	96, 498, 829
Eco47III	AGCGCT	2 cut(s)	563, 622
Eco88I	CYCGRG	2 cut(s)	681, 716
EcoO109I	RGGNCCY	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	372, 785
EcoT14I	CCWWGG	1 cut(s)	546
EcoT38I	GRGCYC	2 cut(s)	300, 767
EgeI	GGCGCC	1 cut(s)	583
EheI	GGCGCC	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	546
Esp3I	CGTCTC	1 cut(s)	680
FaeI	CATG	1 cut(s)	178
FaiI	YATR	4 cut(s)	84, 176, 293, 626
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	1 cut(s)	174
FauI	CCCGC	2 cut(s)	191, 734
FriOI	GRGCYC	2 cut(s)	300, 767
GlaI	GCGC	4 cut(s)	378, 563, 583, 622
GsuI	CTGGAG	1 cut(s)	55
HaeII	RGCGCY	4 cut(s)	380, 565, 585, 624
HaeIII	GGCC	7 cut(s)	68, 395, 428, 438, 476, 555, 675
HapII	CCGG	8 cut(s)	36, 320, 403, 492, 537, 588, 707, 744
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	4 cut(s)	379, 564, 584, 623
Hin1I	GRCGYC	1 cut(s)	582
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	4 cut(s)	377, 562, 582, 621
HinP1I	GCGC	4 cut(s)	377, 562, 582, 621
HincII	GTYRAC	1 cut(s)	651
HindII	GTYRAC	1 cut(s)	651
HpaII	CCGG	8 cut(s)	36, 320, 403, 492, 537, 588, 707, 744
Hpy166II	GTNNAC	4 cut(s)	96, 122, 444, 651
Hpy188I	TCNGA	3 cut(s)	145, 383, 637
Hpy8I	GTNNAC	4 cut(s)	96, 122, 444, 651
Hpy99I	CGWCG	2 cut(s)	437, 778
HpyAV	CCTTC	1 cut(s)	297
HpyCH4IV	ACGT	3 cut(s)	305, 446, 689
HpyCH4V	TGCA	2 cut(s)	10, 416
HpyF3I	CTNAG	2 cut(s)	329, 636
HpySE526I	ACGT	3 cut(s)	305, 446, 689
Hsp92I	GRCGYC	1 cut(s)	582
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	4 cut(s)	377, 562, 582, 621
KasI	GGCGCC	1 cut(s)	581
KroI	GCCGGC	1 cut(s)	706
KroNI	GCCGGC	1 cut(s)	708
KspI	CCGCGG	2 cut(s)	187, 474
Kzo9I	GATC	3 cut(s)	270, 422, 590
LmnI	GCTCC	3 cut(s)	38, 295, 515
Lsp1109I	GCAGC	2 cut(s)	428, 551
LweI	GCATC	1 cut(s)	320
MaeII	ACGT	3 cut(s)	305, 446, 689
MalI	GATC	3 cut(s)	272, 424, 592
MboI	GATC	3 cut(s)	270, 422, 590
MboII	GAAGA	3 cut(s)	357, 727, 790
MflI	RGATCY	1 cut(s)	590
MhlI	GDGCHC	3 cut(s)	300, 344, 767
MluCI	AATT	1 cut(s)	838
Mly113I	GGCGCC	1 cut(s)	582
MroNI	GCCGGC	1 cut(s)	706
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	573
MspA1I	CMGCKG	3 cut(s)	186, 419, 473
MspI	CCGG	8 cut(s)	36, 320, 403, 492, 537, 588, 707, 744
MspR9I	CCNGG	2 cut(s)	374, 787
Mva1269I	GAATGC	1 cut(s)	512
MvaI	CCWGG	2 cut(s)	374, 787
MvnI	CGCG	4 cut(s)	186, 473, 662, 729
NaeI	GCCGGC	1 cut(s)	708
NarI	GGCGCC	1 cut(s)	582
NdeII	GATC	3 cut(s)	270, 422, 590
NgoMIV	GCCGGC	1 cut(s)	706
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	5 cut(s)	40, 297, 500, 583, 592
NmeAIII	GCCGAG	2 cut(s)	57, 112
PceI	AGGCCT	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	1 cut(s)	512
PdiI	GCCGGC	1 cut(s)	708
PinAI	ACCGGT	1 cut(s)	536
PluTI	GGCGCC	1 cut(s)	585
PpuMI	RGGWCCY	1 cut(s)	498
Psp5II	RGGWCCY	1 cut(s)	498
Psp6I	CCWGG	2 cut(s)	372, 785
PspGI	CCWGG	2 cut(s)	372, 785
PspN4I	GGNNCC	5 cut(s)	40, 297, 500, 583, 592
PspPI	GGNCC	4 cut(s)	96, 437, 498, 829
PspPPI	RGGWCCY	1 cut(s)	498
PstI	CTGCAG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	590
PvuII	CAGCTG	1 cut(s)	419
RseI	CAYNNNNRTG	1 cut(s)	573
SacII	CCGCGG	2 cut(s)	187, 474
SaqAI	TTAA	1 cut(s)	324
Sau3AI	GATC	3 cut(s)	270, 422, 590
Sau96I	GGNCC	4 cut(s)	96, 437, 498, 829
ScrFI	CCNGG	2 cut(s)	374, 787
SduI	GDGCHC	3 cut(s)	300, 344, 767
SfaNI	GCATC	1 cut(s)	320
SfcI	CTRYAG	1 cut(s)	414
SfoI	GGCGCC	1 cut(s)	583
Sfr303I	CCGCGG	2 cut(s)	187, 474
SgrBI	CCGCGG	2 cut(s)	187, 474
SinI	GGWCC	3 cut(s)	96, 498, 829
SmiMI	CAYNNNNRTG	1 cut(s)	573
Sse9I	AATT	1 cut(s)	838
SseBI	AGGCCT	1 cut(s)	68
SspDI	GGCGCC	1 cut(s)	581
StuI	AGGCCT	1 cut(s)	68
StyD4I	CCNGG	2 cut(s)	372, 785
StyI	CCWWGG	1 cut(s)	546
TaiI	ACGT	3 cut(s)	308, 449, 692
TaqI	TCGA	2 cut(s)	129, 432
TasI	AATT	1 cut(s)	838
TauI	GCSGC	8 cut(s)	35, 230, 260, 473, 476, 555, 582, 587
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TseI	GCWGC	2 cut(s)	416, 564
TspDTI	ATGAA	2 cut(s)	727, 818
VpaK11BI	GGWCC	3 cut(s)	96, 498, 829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.