Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007703

Physical Location & Seq

Genomic Coordinates Forward (+)

4133499 .. 4134344

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g06720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTCTGCAAGCTCTCAACTCGCCAACAGCCGCCGGACCCTCTCCTTTCCCATTTGAGAACGAGGCCTCCAGCCTCGGCTATGCCGAGCCGTGGACCAAACGCAAGCGTTCCAAGCGTCCACGCCTCGACACCCCTCACTCCGAGGAGGAGTATCTTGCCATCTGCCTCATCATGCTTGCCCGCGGAAACAGAGGTGGAGACCTCGCCTCTACTACCGCCACCGCCGCCACAGACACTAAAGAAACAAACTCCGCCGCCTCACACCAGATCATCACTCAATCCCCTTCTATGGAGCCCTCCACGTCAGCAGCGCCGCCGGTTAAGCTGAGCTACAAGTGCTCTGTTTGCGACAAGGTCTTCTCTTCTTACCAGGCGCTCGGAGGCCACAAGGCCAGCCACCGGAAAGGCTCTGCAGCCGGATCGGCCATCGAAGGCCCGTCCACGTCATCAACCACAACAACCTCTGCCGCCGCCGCCACTGCCACAGCTTCCGGTAGGTCCCACGAGTGCTCCATCTGCCACAAGTCTTTCCCCACCGGTCAAGCCTTGGGCGGCCACAAGCGCTGCCACTACGATGGCGGCGCCGCCGGATCCACAGCCACCACCACCGCTACCACGAGCGTTATAACTTCCTCTGAGGGAGTCGGGTCAACTTCTCACACGGTCAGCCACGGCCACCCGCGAGAGACGTTTGACCTGAACCTGCCGGCGTTGCCCGAGTTCTCCCGCGACTTCTTCGTCTCCGGCGAGGACGAAGTGGAGAGCCCCCACCCGACGAAGAAGCCCAGGCTTCTACCGATGATGAAGCCCAAAATCGAGATTTCACAGGACCAACAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

282

Amino Acids

29.49

Weight (kDa)

7.71

Isoelectric Point (pI)

58.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	112 - 136	1.2e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	169 - 193	4.4e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27730 AT3G49930 AT5G04340 AT5G67450
fragaria_vesca	FvH4_2g33250
malus_domestica	MD01G1041900.v1.1 MD03G1122300.v1.1 MD08G1086500.v1.1 MD15G1071400.v1.1
prunus_persica	Prupe.1G424300_v2.0.a1
pyrus_communis	pycom08g07100 pycom15g06720
rosa_chinensis	RchiOBHm_Chr6g0309391
rosa_laevigata	RLG00000010570
rosa_multiflora	Rmu_co8321009.1_g000001 Rmu_sc0012466.1_g000004 Rmu_sc0017306.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159440
rosa_rugosa	Rorug06G0371800
rosa_samantha	Rh6AG484900 Rh6BG494100 Rh6CG499000 Rh6DG485300
rosa_wichuraiana	Rw6G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	629
AasI	GACNNNNNNGTC	1 cut(s)	740
Acc36I	ACCTGC	1 cut(s)	714
AccB1I	GGYRCC	1 cut(s)	584
AccII	CGCG	3 cut(s)	186, 685, 732
AclWI	GGATC	3 cut(s)	430, 588, 601
AcoI	YGGCCR	3 cut(s)	426, 556, 676
AcyI	GRCGYC	1 cut(s)	585
AfeI	AGCGCT	1 cut(s)	566
AfiI	CCNNNNNNNGG	3 cut(s)	93, 292, 402
AgeI	ACCGGT	1 cut(s)	539
AjiI	CACGTC	2 cut(s)	306, 447
AjnI	CCWGG	2 cut(s)	372, 788
AloI	GAACNNNNNNTCC	2 cut(s)	53, 85
AluBI	AGCT	4 cut(s)	14, 328, 333, 491
AluI	AGCT	4 cut(s)	14, 328, 333, 491
Alw21I	GWGCWC	2 cut(s)	344, 515
Alw26I	GTCTC	3 cut(s)	195, 683, 748
AlwI	GGATC	3 cut(s)	430, 588, 601
Ama87I	CYCGRG	1 cut(s)	719
Aor51HI	AGCGCT	1 cut(s)	566
AoxI	GGCC	7 cut(s)	66, 385, 393, 426, 436, 556, 676
ApeKI	GCWGC	3 cut(s)	311, 416, 567
AsiGI	ACCGGT	1 cut(s)	539
AspLEI	GCGC	4 cut(s)	316, 379, 567, 587
AspS9I	GGNCC	5 cut(s)	38, 96, 437, 501, 832
AvaI	CYCGRG	1 cut(s)	719
AvaII	GGWCC	4 cut(s)	38, 96, 501, 832
BamHI	GGATCC	1 cut(s)	593
BanI	GGYRCC	1 cut(s)	584
BanII	GRGCYC	2 cut(s)	300, 770
BauI	CACGAG	2 cut(s)	506, 619
BbsI	GAAGAC	1 cut(s)	352
Bbv12I	GWGCWC	2 cut(s)	344, 515
BbvI	GCAGC	3 cut(s)	323, 428, 554
BccI	CCATC	4 cut(s)	170, 437, 524, 572
BceAI	ACGGC	2 cut(s)	76, 691
BcgI	CGANNNNNNTGC	2 cut(s)	405, 439
BciT130I	CCWGG	2 cut(s)	374, 790
BcoDI	GTCTC	3 cut(s)	195, 683, 748
BfmI	CTRYAG	1 cut(s)	414
BfoI	RGCGCY	4 cut(s)	317, 380, 568, 588
BfuAI	ACCTGC	1 cut(s)	714
BglI	GCCNNNNNGGC	1 cut(s)	425
BlpI	GCTNAGC	1 cut(s)	329
Bme1390I	CCNGG	2 cut(s)	374, 790
Bme18I	GGWCC	4 cut(s)	38, 96, 501, 832
BmeT110I	CYCGRG	1 cut(s)	719
BmgBI	CACGTC	2 cut(s)	306, 447
BmgT120I	GGNCC	5 cut(s)	38, 96, 437, 501, 832
BmiI	GGNNCC	5 cut(s)	40, 297, 503, 586, 595
BmrFI	CCNGG	2 cut(s)	374, 790
BpiI	GAAGAC	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	55
Bpu1102I	GCTNAGC	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	7 cut(s)	76, 92, 144, 184, 549, 673, 788
BsaWI	WCCGGW	3 cut(s)	402, 494, 539
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 497, 527
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 292, 402
Bse118I	RCCGGY	3 cut(s)	319, 539, 709
BseBI	CCWGG	2 cut(s)	374, 790
BseDI	CCNNGG	7 cut(s)	76, 92, 144, 184, 549, 673, 788
BseLI	CCNNNNNNNGG	3 cut(s)	93, 292, 402
BseMII	CTCAG	2 cut(s)	320, 630
BseRI	GAGGAG	2 cut(s)	161, 164
BseXI	GCAGC	3 cut(s)	323, 428, 554
Bsh1236I	CGCG	3 cut(s)	186, 685, 732
BshFI	GGCC	7 cut(s)	68, 387, 395, 428, 438, 558, 678
BshNI	GGYRCC	1 cut(s)	584
BshTI	ACCGGT	1 cut(s)	539
BsiHKAI	GWGCWC	2 cut(s)	344, 515
BsiHKCI	CYCGRG	1 cut(s)	719
BsiSI	CCGG	9 cut(s)	36, 320, 403, 420, 495, 540, 591, 710, 747
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	3 cut(s)	93, 292, 402
BsmAI	GTCTC	3 cut(s)	195, 683, 748
BsmBI	CGTCTC	2 cut(s)	683, 748
BsmFI	GGGAC	1 cut(s)	487
BsnI	GGCC	7 cut(s)	68, 387, 395, 428, 438, 558, 678
Bso31I	GGTCTC	1 cut(s)	195
BsoBI	CYCGRG	1 cut(s)	719
Bsp1286I	GDGCHC	4 cut(s)	300, 344, 515, 770
Bsp143I	GATC	3 cut(s)	270, 422, 593
Bsp1720I	GCTNAGC	1 cut(s)	329
BspANI	GGCC	7 cut(s)	68, 387, 395, 428, 438, 558, 678
BspCNI	CTCAG	2 cut(s)	321, 631
BspFNI	CGCG	3 cut(s)	186, 685, 732
BspLI	GGNNCC	5 cut(s)	40, 297, 503, 586, 595
BspMAI	CTGCAG	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	714
BspPI	GGATC	3 cut(s)	430, 588, 601
BspT107I	GGYRCC	1 cut(s)	584
BspTNI	GGTCTC	1 cut(s)	195
BsrFI	RCCGGY	3 cut(s)	319, 539, 709
BssAI	RCCGGY	3 cut(s)	319, 539, 709
BssECI	CCNNGG	7 cut(s)	76, 92, 144, 184, 549, 673, 788
BssMI	GATC	3 cut(s)	270, 422, 593
BssNI	GRCGYC	1 cut(s)	585
BssSI	CACGAG	2 cut(s)	506, 619
BssT1I	CCWWGG	1 cut(s)	549
Bst2BI	CACGAG	2 cut(s)	506, 619
Bst2UI	CCWGG	2 cut(s)	374, 790
Bst4CI	ACNGT	1 cut(s)	667
Bst6I	CTCTTC	1 cut(s)	370
BstACI	GRCGYC	1 cut(s)	585
BstC8I	GCNNGC	6 cut(s)	12, 107, 180, 184, 397, 711
BstDEI	CTNAG	2 cut(s)	329, 639
BstDSI	CCRYGG	3 cut(s)	92, 184, 673
BstFNI	CGCG	3 cut(s)	186, 685, 732
BstH2I	RGCGCY	4 cut(s)	317, 380, 568, 588
BstHHI	GCGC	4 cut(s)	316, 379, 567, 587
BstKTI	GATC	3 cut(s)	273, 425, 596
BstMAI	GTCTC	3 cut(s)	195, 683, 748
BstMBI	GATC	3 cut(s)	270, 422, 593
BstNI	CCWGG	2 cut(s)	374, 790
BstSCI	CCNGG	2 cut(s)	372, 788
BstSFI	CTRYAG	1 cut(s)	414
BstUI	CGCG	3 cut(s)	186, 685, 732
BstV1I	GCAGC	3 cut(s)	323, 428, 554
BstV2I	GAAGAC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	593
BstXI	CCANNNNNNTGG	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	593
BsuRI	GGCC	7 cut(s)	68, 387, 395, 428, 438, 558, 678
BtgI	CCRYGG	3 cut(s)	92, 184, 673
BtrI	CACGTC	2 cut(s)	306, 447
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	480
BveI	ACCTGC	1 cut(s)	714
Cac8I	GCNNGC	6 cut(s)	12, 107, 180, 184, 397, 711
CfoI	GCGC	4 cut(s)	316, 379, 567, 587
Cfr10I	RCCGGY	3 cut(s)	319, 539, 709
Cfr13I	GGNCC	5 cut(s)	38, 96, 437, 501, 832
Cfr42I	CCGCGG	1 cut(s)	187
CseI	GACGC	1 cut(s)	107
CspAI	ACCGGT	1 cut(s)	539
CviAII	CATG	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	329, 639
DinI	GGCGCC	1 cut(s)	586
DpnI	GATC	3 cut(s)	272, 424, 595
DpnII	GATC	3 cut(s)	270, 422, 593
DrdI	GACNNNNNNGTC	1 cut(s)	740
DseDI	GACNNNNNNGTC	1 cut(s)	740
EaeI	YGGCCR	3 cut(s)	426, 556, 676
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
EciI	GGCGGA	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	549
Eco147I	AGGCCT	1 cut(s)	68
Eco24I	GRGCYC	2 cut(s)	300, 770
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	4 cut(s)	38, 96, 501, 832
Eco47III	AGCGCT	1 cut(s)	566
Eco88I	CYCGRG	1 cut(s)	719
EcoO109I	RGGNCCY	1 cut(s)	501
EcoRII	CCWGG	2 cut(s)	372, 788
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	2 cut(s)	300, 770
EgeI	GGCGCC	1 cut(s)	586
EheI	GGCGCC	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	549
Esp3I	CGTCTC	2 cut(s)	683, 748
FaeI	CATG	1 cut(s)	178
FaiI	YATR	4 cut(s)	84, 176, 293, 629
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	1 cut(s)	174
FauI	CCCGC	3 cut(s)	191, 690, 737
FriOI	GRGCYC	2 cut(s)	300, 770
GlaI	GCGC	4 cut(s)	315, 378, 566, 586
GsuI	CTGGAG	1 cut(s)	55
HaeII	RGCGCY	4 cut(s)	317, 380, 568, 588
HaeIII	GGCC	7 cut(s)	68, 387, 395, 428, 438, 558, 678
HapII	CCGG	9 cut(s)	36, 320, 403, 420, 495, 540, 591, 710, 747
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	4 cut(s)	316, 379, 567, 587
Hin1I	GRCGYC	1 cut(s)	585
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	4 cut(s)	314, 377, 565, 585
HinP1I	GCGC	4 cut(s)	314, 377, 565, 585
HincII	GTYRAC	1 cut(s)	654
HindII	GTYRAC	1 cut(s)	654
HinfI	GANTC	1 cut(s)	645
HpaII	CCGG	9 cut(s)	36, 320, 403, 420, 495, 540, 591, 710, 747
Hpy166II	GTNNAC	4 cut(s)	96, 122, 444, 654
Hpy188I	TCNGA	3 cut(s)	145, 383, 640
Hpy188III	TCNNGA	1 cut(s)	820
Hpy8I	GTNNAC	4 cut(s)	96, 122, 444, 654
Hpy99I	CGWCG	1 cut(s)	781
HpyAV	CCTTC	2 cut(s)	297, 428
HpyCH4III	ACNGT	1 cut(s)	667
HpyCH4IV	ACGT	3 cut(s)	305, 446, 692
HpyCH4V	TGCA	2 cut(s)	10, 416
HpyF3I	CTNAG	2 cut(s)	329, 639
HpySE526I	ACGT	3 cut(s)	305, 446, 692
Hsp92I	GRCGYC	1 cut(s)	585
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	4 cut(s)	314, 377, 565, 585
KasI	GGCGCC	1 cut(s)	584
KroI	GCCGGC	1 cut(s)	709
KroNI	GCCGGC	1 cut(s)	711
KspI	CCGCGG	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	270, 422, 593
LmnI	GCTCC	2 cut(s)	295, 518
Lsp1109I	GCAGC	3 cut(s)	323, 428, 554
MaeII	ACGT	3 cut(s)	305, 446, 692
MalI	GATC	3 cut(s)	272, 424, 595
MboI	GATC	3 cut(s)	270, 422, 593
MboII	GAAGA	4 cut(s)	352, 357, 730, 793
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	4 cut(s)	300, 344, 515, 770
MluCI	AATT	1 cut(s)	841
Mly113I	GGCGCC	1 cut(s)	585
MlyI	GAGTC	1 cut(s)	654
MroNI	GCCGGC	1 cut(s)	709
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	576
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	9 cut(s)	36, 320, 403, 420, 495, 540, 591, 710, 747
MspR9I	CCNGG	2 cut(s)	374, 790
MvaI	CCWGG	2 cut(s)	374, 790
MvnI	CGCG	3 cut(s)	186, 685, 732
NaeI	GCCGGC	1 cut(s)	711
NarI	GGCGCC	1 cut(s)	585
NdeII	GATC	3 cut(s)	270, 422, 593
NgoMIV	GCCGGC	1 cut(s)	709
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	5 cut(s)	40, 297, 503, 586, 595
NmeAIII	GCCGAG	2 cut(s)	57, 112
PceI	AGGCCT	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 747
PdiI	GCCGGC	1 cut(s)	711
PflFI	GACNNNGTC	1 cut(s)	356
PinAI	ACCGGT	1 cut(s)	539
PleI	GAGTC	1 cut(s)	653
PluTI	GGCGCC	1 cut(s)	588
PpsI	GAGTC	1 cut(s)	653
PpuMI	RGGWCCY	1 cut(s)	501
PsiI	TTATAA	1 cut(s)	629
Psp5II	RGGWCCY	1 cut(s)	501
Psp6I	CCWGG	2 cut(s)	372, 788
PspGI	CCWGG	2 cut(s)	372, 788
PspN4I	GGNNCC	5 cut(s)	40, 297, 503, 586, 595
PspPI	GGNCC	5 cut(s)	38, 96, 437, 501, 832
PspPPI	RGGWCCY	1 cut(s)	501
PstI	CTGCAG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	593
PsyI	GACNNNGTC	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	576
SacII	CCGCGG	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	324
Sau3AI	GATC	3 cut(s)	270, 422, 593
Sau96I	GGNCC	5 cut(s)	38, 96, 437, 501, 832
SchI	GAGTC	1 cut(s)	654
ScrFI	CCNGG	2 cut(s)	374, 790
SduI	GDGCHC	4 cut(s)	300, 344, 515, 770
SfcI	CTRYAG	1 cut(s)	414
SfoI	GGCGCC	1 cut(s)	586
Sfr303I	CCGCGG	1 cut(s)	187
SgrBI	CCGCGG	1 cut(s)	187
SinI	GGWCC	4 cut(s)	38, 96, 501, 832
SmiMI	CAYNNNNRTG	1 cut(s)	576
Sse9I	AATT	1 cut(s)	841
SseBI	AGGCCT	1 cut(s)	68
SspDI	GGCGCC	1 cut(s)	584
StuI	AGGCCT	1 cut(s)	68
StyD4I	CCNGG	2 cut(s)	372, 788
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	1 cut(s)	667
TaiI	ACGT	3 cut(s)	308, 449, 695
TaqI	TCGA	3 cut(s)	129, 432, 819
TasI	AATT	1 cut(s)	841
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	487
TseI	GCWGC	3 cut(s)	311, 416, 567
TspDTI	ATGAA	1 cut(s)	821
TspRI	CASTG	1 cut(s)	487
Tth111I	GACNNNGTC	1 cut(s)	356
VpaK11BI	GGWCC	4 cut(s)	38, 96, 501, 832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.