Rh6DG485300

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
64752671 .. 64753758
1088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG485300.1

Sequence Viewer

Length: 804 bp
ATGGCCCTCGAAGCTCTTAACTCTCCGACTGCCGCCGGCCAAGGCTTCCACTACGACGAGCCCAAGCTCCAGTACTCGGAGCCATGGACCAAGCGCAAGCGCTCCAAGCGTCCACGAAGCGTAGAGCAGACTCAAGTCTCTGAGGAGGAGTATCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCGGTAACAGCGGAGGACCCATCACCGTCTCACACCGCAGTCAGTCTCCGGTTCCAAGTGTTTCTCCTGTTATTGAACAGGCCACGTCAGCACCGGCCAAGGAGAATCAGCTGCTCAGTTACAAGTGCTCTGTTTGTGACAAGAGTTTTCCCTCGTACCAGGCTCTGGGTGGACACAAGGCCAGCCACAGGAAGGGATCTTCCGCCGTCACCGGCGGCGAAGGACCCTCCACGTCATCCACCACCACCACCACCACATCCACCGTCACCGTCTCCAACGCCTCCGGTAGGTCCCACGAGTGCTCCATCTGCCACAAGTCTTTCCCCACCGGCCAGGCATTGGGAGGACACAAGCGGTGCCACTACGAGGGCGGCGCCACCGCCACCAGGTCCGCCGCAACCACCAGCGCCGTGACCACCTCGGAGGGAGTGGGGTCTACCACTCACACCGTCAGCCAGAGCCACCAACACCGCGAAGCGTTTGATCTGAACTTACCGGCCTTCCCGGAGCCGTTGTCAAGGAATTTCTTCCTCTCCGGCGACGACGAGGTGGAGAGCCCACATCCGACGAAGAAGCCCCGTCTATTCATGACCCCTAAAGTTGAGATATCACTCAATTAG

Protein Analysis

267

Amino Acids

28.5

Weight (kDa)

8.71

Isoelectric Point (pI)

67.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 102 - 126 3.8e-14 C2H2-type zinc finger
zf-C2H2_6 PF13912 160 - 183 7.4e-12 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 540, 557
AccB7I CCANNNNNTGG 2 cut(s) 349, 523
AccI GTMKAC 1 cut(s) 620
AccII CGCG 2 cut(s) 183, 657
AclWI GGATC 1 cut(s) 388
AcoI YGGCCR 3 cut(s) 37, 279, 514
AcsI RAATTY 1 cut(s) 706
AcyI GRCGYC 1 cut(s) 558
AfaI GTAC 2 cut(s) 74, 341
AfeI AGCGCT 1 cut(s) 101
AfiI CCNNNNNNNGG 8 cut(s) 76, 349, 372, 376, 471, 523, 550, 570
AgsI TTSAA 1 cut(s) 260
AjiI CACGTC 2 cut(s) 270, 417
AjnI CCWGG 3 cut(s) 342, 516, 569
AluBI AGCT 3 cut(s) 14, 67, 295
AluI AGCT 3 cut(s) 14, 67, 295
Alw21I GWGCWC 2 cut(s) 314, 488
Alw26I GTCTC 4 cut(s) 142, 217, 234, 460
AlwI GGATC 1 cut(s) 388
AlwNI CAGNNNCTG 1 cut(s) 349
Aor51HI AGCGCT 1 cut(s) 101
AoxI GGCC 7 cut(s) 3, 37, 264, 279, 363, 514, 681
ApeKI GCWGC 1 cut(s) 295
ApoI RAATTY 1 cut(s) 706
Asp700I GAANNNNTTC 1 cut(s) 710
AspLEI GCGC 4 cut(s) 96, 102, 560, 593
AspS9I GGNCC 6 cut(s) 4, 87, 200, 407, 474, 573
AsuC2I CCSGG 1 cut(s) 689
AsuHPI GGTGA 3 cut(s) 199, 385, 442
AvaII GGWCC 5 cut(s) 87, 200, 407, 474, 573
BanI GGYRCC 2 cut(s) 540, 557
BanII GRGCYC 2 cut(s) 63, 743
BauI CACGAG 1 cut(s) 479
Bbv12I GWGCWC 2 cut(s) 314, 488
BbvI GCAGC 1 cut(s) 282
BccI CCATC 2 cut(s) 212, 497
BceAI ACGGC 3 cut(s) 374, 578, 679
BciT130I CCWGG 3 cut(s) 344, 518, 571
BcnI CCSGG 1 cut(s) 689
BcoDI GTCTC 4 cut(s) 142, 217, 234, 460
BfoI RGCGCY 3 cut(s) 103, 561, 594
BisI GCNGC 6 cut(s) 33, 184, 296, 400, 556, 579
BlsI GCNGC 6 cut(s) 34, 185, 297, 401, 557, 580
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 4 cut(s) 344, 518, 571, 689
Bme18I GGWCC 5 cut(s) 87, 200, 407, 474, 573
BmgBI CACGTC 2 cut(s) 270, 417
BmgT120I GGNCC 6 cut(s) 4, 87, 200, 407, 474, 573
BmiI GGNNCC 8 cut(s) 81, 202, 237, 409, 476, 542, 559, 693
BmrFI CCNGG 4 cut(s) 344, 518, 571, 689
BoxI GACNNNNGTC 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 689
BsaHI GRCGYC 1 cut(s) 558
BsaJI CCNNGG 4 cut(s) 40, 83, 282, 603
BsaWI WCCGGW 2 cut(s) 232, 467
BsaXI ACNNNNNCTCC 4 cut(s) 470, 500, 683, 713
Bsc4I CCNNNNNNNGG 8 cut(s) 76, 349, 372, 376, 471, 523, 550, 570
Bse118I RCCGGY 5 cut(s) 35, 277, 395, 512, 679
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 3 cut(s) 344, 518, 571
BseDI CCNNGG 4 cut(s) 40, 83, 282, 603
BseGI GGATG 3 cut(s) 419, 440, 745
BseLI CCNNNNNNNGG 8 cut(s) 76, 349, 372, 376, 471, 523, 550, 570
BseMII CTCAG 2 cut(s) 132, 313
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 2 cut(s) 158, 161
BseXI GCAGC 1 cut(s) 282
Bsh1236I CGCG 2 cut(s) 183, 657
BshFI GGCC 7 cut(s) 5, 39, 266, 281, 365, 516, 683
BshNI GGYRCC 2 cut(s) 540, 557
BsiHKAI GWGCWC 2 cut(s) 314, 488
BsiSI CCGG 9 cut(s) 36, 233, 278, 396, 468, 513, 680, 689, 720
BslFI GGGAC 1 cut(s) 460
BslI CCNNNNNNNGG 8 cut(s) 76, 349, 372, 376, 471, 523, 550, 570
BsmAI GTCTC 4 cut(s) 142, 217, 234, 460
BsmBI CGTCTC 2 cut(s) 217, 460
BsmFI GGGAC 1 cut(s) 460
BsnI GGCC 7 cut(s) 5, 39, 266, 281, 365, 516, 683
Bsp1286I GDGCHC 4 cut(s) 63, 314, 488, 743
Bsp143I GATC 2 cut(s) 380, 667
Bsp19I CCATGG 1 cut(s) 83
BspANI GGCC 7 cut(s) 5, 39, 266, 281, 365, 516, 683
BspCNI CTCAG 2 cut(s) 133, 312
BspFNI CGCG 2 cut(s) 183, 657
BspHI TCATGA 1 cut(s) 771
BspLI GGNNCC 8 cut(s) 81, 202, 237, 409, 476, 542, 559, 693
BspPI GGATC 1 cut(s) 388
BspT107I GGYRCC 2 cut(s) 540, 557
BsrFI RCCGGY 5 cut(s) 35, 277, 395, 512, 679
BsrI ACTGG 1 cut(s) 70
BssAI RCCGGY 5 cut(s) 35, 277, 395, 512, 679
BssECI CCNNGG 4 cut(s) 40, 83, 282, 603
BssMI GATC 2 cut(s) 380, 667
BssNI GRCGYC 1 cut(s) 558
BssSI CACGAG 1 cut(s) 479
BssT1I CCWWGG 3 cut(s) 40, 83, 282
Bst2BI CACGAG 1 cut(s) 479
Bst2UI CCWGG 3 cut(s) 344, 518, 571
Bst4CI ACNGT 4 cut(s) 211, 448, 454, 634
BstACI GRCGYC 1 cut(s) 558
BstC8I GCNNGC 5 cut(s) 37, 98, 177, 181, 367
BstDEI CTNAG 2 cut(s) 141, 299
BstDSI CCRYGG 1 cut(s) 83
BstENI CCTNNNNNAGG 1 cut(s) 469
BstF5I GGATG 3 cut(s) 419, 440, 745
BstFNI CGCG 2 cut(s) 183, 657
BstH2I RGCGCY 3 cut(s) 103, 561, 594
BstHHI GCGC 4 cut(s) 96, 102, 560, 593
BstKTI GATC 2 cut(s) 383, 670
BstMAI GTCTC 4 cut(s) 142, 217, 234, 460
BstMBI GATC 2 cut(s) 380, 667
BstMWI GCNNNNNNNGC 5 cut(s) 11, 106, 192, 272, 492
BstNI CCWGG 3 cut(s) 344, 518, 571
BstPAI GACNNNNGTC 1 cut(s) 134
BstSCI CCNGG 4 cut(s) 342, 516, 569, 687
BstUI CGCG 2 cut(s) 183, 657
BstV1I GCAGC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
BsuRI GGCC 7 cut(s) 5, 39, 266, 281, 365, 516, 683
BtgI CCRYGG 1 cut(s) 83
BtrI CACGTC 2 cut(s) 270, 417
BtsCI GGATG 3 cut(s) 419, 440, 745
Cac8I GCNNGC 5 cut(s) 37, 98, 177, 181, 367
CaiI CAGNNNCTG 1 cut(s) 349
CciI TCATGA 1 cut(s) 771
CfoI GCGC 4 cut(s) 96, 102, 560, 593
Cfr10I RCCGGY 5 cut(s) 35, 277, 395, 512, 679
Cfr13I GGNCC 6 cut(s) 4, 87, 200, 407, 474, 573
CseI GACGC 1 cut(s) 98
CsiI ACCWGGT 1 cut(s) 569
Csp6I GTAC 2 cut(s) 73, 340
CviAII CATG 3 cut(s) 84, 172, 772
CviQI GTAC 2 cut(s) 73, 340
DdeI CTNAG 2 cut(s) 141, 299
DinI GGCGCC 1 cut(s) 559
DpnI GATC 2 cut(s) 382, 669
DpnII GATC 2 cut(s) 380, 667
EaeI YGGCCR 3 cut(s) 37, 279, 514
EciI GGCGGA 2 cut(s) 376, 565
Eco130I CCWWGG 3 cut(s) 40, 83, 282
Eco24I GRGCYC 2 cut(s) 63, 743
Eco32I GATATC 1 cut(s) 792
Eco47I GGWCC 5 cut(s) 87, 200, 407, 474, 573
Eco47III AGCGCT 1 cut(s) 101
EcoNI CCTNNNNNAGG 1 cut(s) 469
EcoO109I RGGNCCY 3 cut(s) 200, 407, 474
EcoRII CCWGG 3 cut(s) 342, 516, 569
EcoRV GATATC 1 cut(s) 792
EcoT14I CCWWGG 3 cut(s) 40, 83, 282
EcoT38I GRGCYC 2 cut(s) 63, 743
EgeI GGCGCC 1 cut(s) 559
EheI GGCGCC 1 cut(s) 559
ErhI CCWWGG 3 cut(s) 40, 83, 282
Esp3I CGTCTC 2 cut(s) 217, 460
FaeI CATG 3 cut(s) 87, 175, 775
FaiI YATR 3 cut(s) 85, 173, 773
FaqI GGGAC 1 cut(s) 460
FatI CATG 3 cut(s) 83, 171, 771
FblI GTMKAC 1 cut(s) 620
Fnu4HI GCNGC 6 cut(s) 33, 184, 296, 400, 556, 579
FokI GGATG 3 cut(s) 406, 427, 732
FriOI GRGCYC 2 cut(s) 63, 743
Fsp4HI GCNGC 6 cut(s) 33, 184, 296, 400, 556, 579
GlaI GCGC 4 cut(s) 95, 101, 559, 592
GluI GCNGC 6 cut(s) 33, 184, 296, 400, 556, 579
GsuI CTGGAG 1 cut(s) 53
HaeII RGCGCY 3 cut(s) 103, 561, 594
HaeIII GGCC 7 cut(s) 5, 39, 266, 281, 365, 516, 683
HapII CCGG 9 cut(s) 36, 233, 278, 396, 468, 513, 680, 689, 720
HgaI GACGC 1 cut(s) 98
HhaI GCGC 4 cut(s) 96, 102, 560, 593
Hin1I GRCGYC 1 cut(s) 558
Hin1II CATG 3 cut(s) 87, 175, 775
Hin6I GCGC 4 cut(s) 94, 100, 558, 591
HinP1I GCGC 4 cut(s) 94, 100, 558, 591
HinfI GANTC 2 cut(s) 130, 289
HpaII CCGG 9 cut(s) 36, 233, 278, 396, 468, 513, 680, 689, 720
HphI GGTGA 3 cut(s) 199, 385, 442
Hpy166II GTNNAC 3 cut(s) 113, 356, 621
Hpy188I TCNGA 6 cut(s) 27, 79, 142, 607, 672, 750
Hpy188III TCNNGA 1 cut(s) 772
Hpy8I GTNNAC 3 cut(s) 113, 356, 621
Hpy99I CGWCG 4 cut(s) 59, 728, 731, 754
HpyAV CCTTC 3 cut(s) 370, 398, 694
HpyCH4III ACNGT 4 cut(s) 211, 448, 454, 634
HpyCH4IV ACGT 2 cut(s) 269, 416
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 106, 192, 272, 492
HpyF3I CTNAG 2 cut(s) 141, 299
HpySE526I ACGT 2 cut(s) 269, 416
Hsp92I GRCGYC 1 cut(s) 558
Hsp92II CATG 3 cut(s) 87, 175, 775
HspAI GCGC 4 cut(s) 94, 100, 558, 591
KasI GGCGCC 1 cut(s) 557
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Kzo9I GATC 2 cut(s) 380, 667
LmnI GCTCC 5 cut(s) 72, 79, 107, 491, 691
Lsp1109I GCAGC 1 cut(s) 282
MabI ACCWGGT 1 cut(s) 569
MaeII ACGT 2 cut(s) 269, 416
MaeIII GTNAC 6 cut(s) 188, 302, 320, 391, 448, 595
MalI GATC 2 cut(s) 382, 669
MboI GATC 2 cut(s) 380, 667
MboII GAAGA 3 cut(s) 375, 703, 766
MflI RGATCY 1 cut(s) 380
MhlI GDGCHC 4 cut(s) 63, 314, 488, 743
MluCI AATT 2 cut(s) 706, 799
Mly113I GGCGCC 1 cut(s) 558
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 3 cut(s) 50, 483, 773
MroNI GCCGGC 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 710
MseI TTAA 1 cut(s) 18
MspA1I CMGCKG 2 cut(s) 195, 295
MspI CCGG 9 cut(s) 36, 233, 278, 396, 468, 513, 680, 689, 720
MspR9I CCNGG 4 cut(s) 344, 518, 571, 689
MvaI CCWGG 3 cut(s) 344, 518, 571
MvnI CGCG 2 cut(s) 183, 657
MwoI GCNNNNNNNGC 5 cut(s) 11, 106, 192, 272, 492
NaeI GCCGGC 1 cut(s) 37
NarI GGCGCC 1 cut(s) 558
NciI CCSGG 1 cut(s) 689
NcoI CCATGG 1 cut(s) 83
NdeII GATC 2 cut(s) 380, 667
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 3 cut(s) 87, 175, 775
NlaIV GGNNCC 8 cut(s) 81, 202, 237, 409, 476, 542, 559, 693
NmuCI GTSAC 4 cut(s) 320, 391, 448, 595
PagI TCATGA 1 cut(s) 771
PdiI GCCGGC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 710
PfeI GAWTC 1 cut(s) 289
PflMI CCANNNNNTGG 2 cut(s) 349, 523
PfoI TCCNGGA 1 cut(s) 687
PkrI GCNGC 6 cut(s) 34, 185, 297, 401, 557, 580
PleI GAGTC 1 cut(s) 124
PluTI GGCGCC 1 cut(s) 561
PpsI GAGTC 1 cut(s) 124
PpuMI RGGWCCY 3 cut(s) 200, 407, 474
PshAI GACNNNNGTC 1 cut(s) 134
Psp5II RGGWCCY 3 cut(s) 200, 407, 474
Psp6I CCWGG 3 cut(s) 342, 516, 569
PspGI CCWGG 3 cut(s) 342, 516, 569
PspN4I GGNNCC 8 cut(s) 81, 202, 237, 409, 476, 542, 559, 693
PspPI GGNCC 6 cut(s) 4, 87, 200, 407, 474, 573
PspPPI RGGWCCY 3 cut(s) 200, 407, 474
PstNI CAGNNNCTG 1 cut(s) 349
PsuI RGATCY 1 cut(s) 380
PvuII CAGCTG 1 cut(s) 295
RsaI GTAC 2 cut(s) 74, 341
RsaNI GTAC 2 cut(s) 73, 340
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 6 cut(s) 33, 184, 296, 400, 556, 579
Sau3AI GATC 2 cut(s) 380, 667
Sau96I GGNCC 6 cut(s) 4, 87, 200, 407, 474, 573
ScaI AGTACT 1 cut(s) 74
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 4 cut(s) 344, 518, 571, 689
SduI GDGCHC 4 cut(s) 63, 314, 488, 743
SetI ASST 9 cut(s) 16, 69, 272, 297, 419, 476, 575, 605, 735
SexAI ACCWGGT 1 cut(s) 569
SfoI GGCGCC 1 cut(s) 559
SgrAI CRCCGGYG 1 cut(s) 395
SinI GGWCC 5 cut(s) 87, 200, 407, 474, 573
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 2 cut(s) 706, 799
SspDI GGCGCC 1 cut(s) 557
StyD4I CCNGG 4 cut(s) 342, 516, 569, 687
StyI CCWWGG 3 cut(s) 40, 83, 282
TaaI ACNGT 4 cut(s) 211, 448, 454, 634
TaiI ACGT 2 cut(s) 272, 419
TaqI TCGA 1 cut(s) 9
TasI AATT 2 cut(s) 706, 799
TatI WGTACW 1 cut(s) 72
TauI GCSGC 5 cut(s) 35, 186, 402, 558, 581
TfiI GAWTC 1 cut(s) 289
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TseFI GTSAC 4 cut(s) 320, 391, 448, 595
TseI GCWGC 1 cut(s) 295
Tsp45I GTSAC 4 cut(s) 320, 391, 448, 595
TspDTI ATGAA 1 cut(s) 760
Van91I CCANNNNNTGG 2 cut(s) 349, 523
VpaK11BI GGWCC 5 cut(s) 87, 200, 407, 474, 573
XagI CCTNNNNNAGG 1 cut(s) 469
XapI RAATTY 1 cut(s) 706
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 620
XmnI GAANNNNTTC 1 cut(s) 710
ZrmI AGTACT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.