Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0007703

Physical Location & Seq

Genomic Coordinates Reverse (-)

13962595 .. 13963236

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1041900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCTCGCCCGCGGTAATAGAGATGGAGACCTCGCCGCTACCACAGCCACTAAAGCAACAGCCTCCGCTGCCTCACACCAGATCATCACTCAATCCCCTTCTATGGAGCTCTCCACGTCAACAGCGCCGCCGGCTAACCTGAGCTACAAGTGCTCTGTTTGCGACAAGAGCTTCTCTTCTTACCAGGCCCTCGGAGGACACAAGGCCAGCCACCGAAAAGGCTCTGCTGCCGGATCGGCCGTCGAGGGCCCGTCCACGTCCTCAAACACCACAAACTCCGCCACCACCACCGCCATCCCTTCGGGAAGGTCCCACGAGTGCTCCATATGCCACAAGTCTTTCCCCACCGGTCAAGCCTTGGGCGGCCACAAGCGCTGCCACTACGATGGCGGCGCCGCAGGATCCACCGCTACCACAAGCGCTATAACTTCCTCTGAGGGAGTCGGGTCAACTTCTCACGCGGTCAGCCACGGCCACCCCCGAGAGACGTTTGACCTGAACCTGCCGGCGCTGCCCGAGTTCTCCCGCGACTTCTTCGTCTCCGGTGAGGAGGAGGTGGAGAGCCCCCACCCGACGAACAAGCCCAGGCTTCTGCTGATAGTGAAGCCCAAAATGGAGATTCCACAGGACCAACAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

214

Amino Acids

22.11

Weight (kDa)

7.17

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	49 - 73	9.5e-14	C2H2-type zinc finger
zf-C2H2_6	PF13912	105 - 129	3e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27730 AT3G49930 AT5G04340 AT5G67450
fragaria_vesca	FvH4_2g33250
malus_domestica	MD01G1041900.v1.1 MD03G1122300.v1.1 MD08G1086500.v1.1 MD15G1071400.v1.1
prunus_persica	Prupe.1G424300_v2.0.a1
pyrus_communis	pycom08g07100 pycom15g06720
rosa_chinensis	RchiOBHm_Chr6g0309391
rosa_laevigata	RLG00000010570
rosa_multiflora	Rmu_co8321009.1_g000001 Rmu_sc0012466.1_g000004 Rmu_sc0017306.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159440
rosa_rugosa	Rorug06G0371800
rosa_samantha	Rh6AG484900 Rh6BG494100 Rh6CG499000 Rh6DG485300
rosa_wichuraiana	Rw6G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	536
Acc36I	ACCTGC	1 cut(s)	510
AccB1I	GGYRCC	1 cut(s)	392
AccII	CGCG	3 cut(s)	12, 461, 528
AclWI	GGATC	3 cut(s)	241, 396, 409
AcoI	YGGCCR	3 cut(s)	237, 364, 472
AcyI	GRCGYC	1 cut(s)	393
AfeI	AGCGCT	2 cut(s)	374, 421
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgeI	ACCGGT	1 cut(s)	347
AjiI	CACGTC	2 cut(s)	117, 258
AjnI	CCWGG	2 cut(s)	183, 584
AluBI	AGCT	3 cut(s)	109, 144, 171
AluI	AGCT	3 cut(s)	109, 144, 171
Alw21I	GWGCWC	3 cut(s)	111, 155, 323
Alw26I	GTCTC	3 cut(s)	21, 479, 544
AlwI	GGATC	3 cut(s)	241, 396, 409
Ama87I	CYCGRG	2 cut(s)	480, 515
Aor51HI	AGCGCT	2 cut(s)	374, 421
AoxI	GGCC	6 cut(s)	186, 204, 237, 247, 364, 472
ApaI	GGGCCC	1 cut(s)	251
ApeKI	GCWGC	4 cut(s)	68, 227, 375, 511
AsiGI	ACCGGT	1 cut(s)	347
AspLEI	GCGC	5 cut(s)	127, 375, 395, 422, 511
AspS9I	GGNCC	5 cut(s)	187, 247, 248, 309, 628
AsuHPI	GGTGA	1 cut(s)	557
AvaI	CYCGRG	2 cut(s)	480, 515
AvaII	GGWCC	2 cut(s)	309, 628
BaeGI	GKGCMC	1 cut(s)	251
BamHI	GGATCC	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	3 cut(s)	111, 251, 566
BauI	CACGAG	1 cut(s)	314
Bbv12I	GWGCWC	3 cut(s)	111, 155, 323
BbvI	GCAGC	4 cut(s)	55, 214, 362, 498
BccI	CCATC	3 cut(s)	17, 302, 380
BceAI	ACGGC	2 cut(s)	224, 487
BciT130I	CCWGG	2 cut(s)	185, 586
BcoDI	GTCTC	3 cut(s)	21, 479, 544
BfoI	RGCGCY	5 cut(s)	128, 376, 396, 423, 512
BfuAI	ACCTGC	1 cut(s)	510
BglI	GCCNNNNNGGC	1 cut(s)	236
BisI	GCNGC	9 cut(s)	36, 69, 128, 228, 364, 376, 391, 396, 512
BlsI	GCNGC	9 cut(s)	37, 70, 129, 229, 365, 377, 392, 397, 513
Bme1390I	CCNGG	2 cut(s)	185, 586
Bme18I	GGWCC	2 cut(s)	309, 628
BmeT110I	CYCGRG	2 cut(s)	480, 515
BmgBI	CACGTC	2 cut(s)	117, 258
BmgT120I	GGNCC	5 cut(s)	187, 247, 248, 309, 628
BmiI	GGNNCC	4 cut(s)	249, 311, 394, 403
BmrFI	CCNGG	2 cut(s)	185, 586
Bpu10I	CCTNAGC	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	5 cut(s)	10, 190, 357, 469, 584
BsaWI	WCCGGW	2 cut(s)	347, 542
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse118I	RCCGGY	3 cut(s)	130, 347, 505
BseBI	CCWGG	2 cut(s)	185, 586
BseDI	CCNNGG	5 cut(s)	10, 190, 357, 469, 584
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	2 cut(s)	131, 426
BseRI	GAGGAG	2 cut(s)	563, 566
BseSI	GKGCMC	1 cut(s)	251
BseX3I	CGGCCG	1 cut(s)	237
BseXI	GCAGC	4 cut(s)	55, 214, 362, 498
Bsh1236I	CGCG	3 cut(s)	12, 461, 528
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	6 cut(s)	188, 206, 239, 249, 366, 474
BshNI	GGYRCC	1 cut(s)	392
BshTI	ACCGGT	1 cut(s)	347
BsiEI	CGRYCG	1 cut(s)	240
BsiHKAI	GWGCWC	3 cut(s)	111, 155, 323
BsiHKCI	CYCGRG	2 cut(s)	480, 515
BsiSI	CCGG	5 cut(s)	131, 231, 348, 506, 543
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	3 cut(s)	21, 479, 544
BsmBI	CGTCTC	2 cut(s)	479, 544
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	6 cut(s)	188, 206, 239, 249, 366, 474
Bso31I	GGTCTC	1 cut(s)	21
BsoBI	CYCGRG	2 cut(s)	480, 515
Bsp120I	GGGCCC	1 cut(s)	247
Bsp1286I	GDGCHC	5 cut(s)	111, 155, 251, 323, 566
Bsp143I	GATC	3 cut(s)	81, 233, 401
BspANI	GGCC	6 cut(s)	188, 206, 239, 249, 366, 474
BspCNI	CTCAG	2 cut(s)	132, 427
BspFNI	CGCG	3 cut(s)	12, 461, 528
BspLI	GGNNCC	4 cut(s)	249, 311, 394, 403
BspMI	ACCTGC	1 cut(s)	510
BspPI	GGATC	3 cut(s)	241, 396, 409
BspT107I	GGYRCC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	21
BsrFI	RCCGGY	3 cut(s)	130, 347, 505
BssAI	RCCGGY	3 cut(s)	130, 347, 505
BssECI	CCNNGG	5 cut(s)	10, 190, 357, 469, 584
BssMI	GATC	3 cut(s)	81, 233, 401
BssNI	GRCGYC	1 cut(s)	393
BssSI	CACGAG	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	2 cut(s)	185, 586
Bst6I	CTCTTC	1 cut(s)	181
BstACI	GRCGYC	1 cut(s)	393
BstC8I	GCNNGC	5 cut(s)	6, 10, 132, 208, 507
BstDEI	CTNAG	2 cut(s)	140, 435
BstDSI	CCRYGG	2 cut(s)	10, 469
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	3 cut(s)	12, 461, 528
BstH2I	RGCGCY	5 cut(s)	128, 376, 396, 423, 512
BstHHI	GCGC	5 cut(s)	127, 375, 395, 422, 511
BstKTI	GATC	3 cut(s)	84, 236, 404
BstMAI	GTCTC	3 cut(s)	21, 479, 544
BstMBI	GATC	3 cut(s)	81, 233, 401
BstMCI	CGRYCG	1 cut(s)	240
BstNI	CCWGG	2 cut(s)	185, 586
BstSCI	CCNGG	2 cut(s)	183, 584
BstSLI	GKGCMC	1 cut(s)	251
BstUI	CGCG	3 cut(s)	12, 461, 528
BstV1I	GCAGC	4 cut(s)	55, 214, 362, 498
BstX2I	RGATCY	1 cut(s)	401
BstXI	CCANNNNNNTGG	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	401
BstZI	CGGCCG	1 cut(s)	237
BsuRI	GGCC	6 cut(s)	188, 206, 239, 249, 366, 474
BtgI	CCRYGG	2 cut(s)	10, 469
BtrI	CACGTC	2 cut(s)	117, 258
BtsCI	GGATG	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	510
Cac8I	GCNNGC	5 cut(s)	6, 10, 132, 208, 507
CfoI	GCGC	5 cut(s)	127, 375, 395, 422, 511
Cfr10I	RCCGGY	3 cut(s)	130, 347, 505
Cfr13I	GGNCC	5 cut(s)	187, 247, 248, 309, 628
Cfr42I	CCGCGG	1 cut(s)	13
CspAI	ACCGGT	1 cut(s)	347
DdeI	CTNAG	2 cut(s)	140, 435
DinI	GGCGCC	1 cut(s)	394
DpnI	GATC	3 cut(s)	83, 235, 403
DpnII	GATC	3 cut(s)	81, 233, 401
DrdI	GACNNNNNNGTC	1 cut(s)	536
DseDI	GACNNNNNNGTC	1 cut(s)	536
EaeI	YGGCCR	3 cut(s)	237, 364, 472
EagI	CGGCCG	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
EciI	GGCGGA	1 cut(s)	268
Ecl136II	GAGCTC	1 cut(s)	109
EclXI	CGGCCG	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	3 cut(s)	111, 251, 566
Eco31I	GGTCTC	1 cut(s)	21
Eco47I	GGWCC	2 cut(s)	309, 628
Eco47III	AGCGCT	2 cut(s)	374, 421
Eco52I	CGGCCG	1 cut(s)	237
Eco53kI	GAGCTC	1 cut(s)	109
Eco88I	CYCGRG	2 cut(s)	480, 515
EcoICRI	GAGCTC	1 cut(s)	109
EcoO109I	RGGNCCY	3 cut(s)	187, 247, 309
EcoRII	CCWGG	2 cut(s)	183, 584
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	3 cut(s)	111, 251, 566
EgeI	GGCGCC	1 cut(s)	394
EheI	GGCGCC	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	357
Esp3I	CGTCTC	2 cut(s)	479, 544
FaiI	YATR	4 cut(s)	104, 326, 328, 425
FaqI	GGGAC	1 cut(s)	295
FauI	CCCGC	2 cut(s)	17, 533
FauNDI	CATATG	1 cut(s)	326
Fnu4HI	GCNGC	9 cut(s)	36, 69, 128, 228, 364, 376, 391, 396, 512
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	3 cut(s)	111, 251, 566
Fsp4HI	GCNGC	9 cut(s)	36, 69, 128, 228, 364, 376, 391, 396, 512
GlaI	GCGC	5 cut(s)	126, 374, 394, 421, 510
GluI	GCNGC	9 cut(s)	36, 69, 128, 228, 364, 376, 391, 396, 512
HaeII	RGCGCY	5 cut(s)	128, 376, 396, 423, 512
HaeIII	GGCC	6 cut(s)	188, 206, 239, 249, 366, 474
HapII	CCGG	5 cut(s)	131, 231, 348, 506, 543
HhaI	GCGC	5 cut(s)	127, 375, 395, 422, 511
Hin1I	GRCGYC	1 cut(s)	393
Hin6I	GCGC	5 cut(s)	125, 373, 393, 420, 509
HinP1I	GCGC	5 cut(s)	125, 373, 393, 420, 509
HincII	GTYRAC	2 cut(s)	120, 450
HindII	GTYRAC	2 cut(s)	120, 450
HinfI	GANTC	2 cut(s)	441, 619
HpaII	CCGG	5 cut(s)	131, 231, 348, 506, 543
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	3 cut(s)	120, 255, 450
Hpy188I	TCNGA	2 cut(s)	194, 436
Hpy188III	TCNNGA	1 cut(s)	303
Hpy8I	GTNNAC	3 cut(s)	120, 255, 450
Hpy99I	CGWCG	2 cut(s)	245, 577
HpyAV	CCTTC	3 cut(s)	108, 300, 309
HpyCH4IV	ACGT	3 cut(s)	116, 257, 488
HpyF3I	CTNAG	2 cut(s)	140, 435
HpySE526I	ACGT	3 cut(s)	116, 257, 488
Hsp92I	GRCGYC	1 cut(s)	393
HspAI	GCGC	5 cut(s)	125, 373, 393, 420, 509
KasI	GGCGCC	1 cut(s)	392
KroI	GCCGGC	2 cut(s)	130, 505
KroNI	GCCGGC	2 cut(s)	132, 507
KspI	CCGCGG	1 cut(s)	13
Kzo9I	GATC	3 cut(s)	81, 233, 401
LmnI	GCTCC	2 cut(s)	106, 326
Lsp1109I	GCAGC	4 cut(s)	55, 214, 362, 498
MaeII	ACGT	3 cut(s)	116, 257, 488
MalI	GATC	3 cut(s)	83, 235, 403
MboI	GATC	3 cut(s)	81, 233, 401
MboII	GAAGA	2 cut(s)	168, 526
MflI	RGATCY	1 cut(s)	401
MhlI	GDGCHC	5 cut(s)	111, 155, 251, 323, 566
MluCI	AATT	1 cut(s)	637
Mly113I	GGCGCC	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	450
MroNI	GCCGGC	2 cut(s)	130, 505
MslI	CAYNNNNRTG	1 cut(s)	384
MspA1I	CMGCKG	2 cut(s)	12, 68
MspI	CCGG	5 cut(s)	131, 231, 348, 506, 543
MspR9I	CCNGG	2 cut(s)	185, 586
MvaI	CCWGG	2 cut(s)	185, 586
MvnI	CGCG	3 cut(s)	12, 461, 528
NaeI	GCCGGC	2 cut(s)	132, 507
NarI	GGCGCC	1 cut(s)	393
NdeI	CATATG	1 cut(s)	326
NdeII	GATC	3 cut(s)	81, 233, 401
NgoMIV	GCCGGC	2 cut(s)	130, 505
NlaIV	GGNNCC	4 cut(s)	249, 311, 394, 403
PdiI	GCCGGC	2 cut(s)	132, 507
PfeI	GAWTC	1 cut(s)	619
PinAI	ACCGGT	1 cut(s)	347
PkrI	GCNGC	9 cut(s)	37, 70, 129, 229, 365, 377, 392, 397, 513
PleI	GAGTC	1 cut(s)	449
PluTI	GGCGCC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	449
PpuMI	RGGWCCY	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	111
Psp5II	RGGWCCY	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	183, 584
PspGI	CCWGG	2 cut(s)	183, 584
PspN4I	GGNNCC	4 cut(s)	249, 311, 394, 403
PspOMI	GGGCCC	1 cut(s)	247
PspPI	GGNCC	5 cut(s)	187, 247, 248, 309, 628
PspPPI	RGGWCCY	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	401
RseI	CAYNNNNRTG	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	111
SacII	CCGCGG	1 cut(s)	13
SatI	GCNGC	9 cut(s)	36, 69, 128, 228, 364, 376, 391, 396, 512
Sau3AI	GATC	3 cut(s)	81, 233, 401
Sau96I	GGNCC	5 cut(s)	187, 247, 248, 309, 628
SchI	GAGTC	1 cut(s)	450
ScrFI	CCNGG	2 cut(s)	185, 586
SduI	GDGCHC	5 cut(s)	111, 155, 251, 323, 566
SfoI	GGCGCC	1 cut(s)	394
Sfr303I	CCGCGG	1 cut(s)	13
SgrBI	CCGCGG	1 cut(s)	13
SinI	GGWCC	2 cut(s)	309, 628
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	1 cut(s)	637
SspDI	GGCGCC	1 cut(s)	392
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	183, 584
StyI	CCWWGG	1 cut(s)	357
TaiI	ACGT	3 cut(s)	119, 260, 491
TaqI	TCGA	1 cut(s)	243
TasI	AATT	1 cut(s)	637
TauI	GCSGC	5 cut(s)	38, 130, 366, 393, 398
TfiI	GAWTC	1 cut(s)	619
TseI	GCWGC	4 cut(s)	68, 227, 375, 511
VpaK11BI	GGWCC	2 cut(s)	309, 628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.