AT5G04340

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007703
Physical Location & Seq
Reverse (-)
1216058 .. 1217362
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G04340.1

Sequence Viewer

Length: 717 bp
ATGGCACTTGAAACTCTTACTTCTCCAAGATTATCTTCTCCGATGCCGACTCTGTTTCAAGATTCAGCACTAGGGTTTCATGGAAGCAAAGGCAAACGATCTAAGCGATCAAGATCTGAATTCGACCGTCAGAGTCTCACGGAGGATGAATATATCGCTTTATGTCTCATGCTTCTTGCTCGCGACGGAGATAGAAACCGTGACCTTGACCTGCCTTCTTCTTCGTCTTCACCTCCTCTGCTTCCTCCTCTTCCTACTCCGATCTACAAGTGTAGCGTCTGTGACAAGGCGTTTTCGTCTTACCAGGCTCTTGGTGGACACAAGGCAAGTCACCGGAAAAGCTTTTCGCTTACTCAATCTGCCGGAGGAGATGAGCTGTCGACATCGTCGGCGATAACCACGTCTGGTATATCCGGTGGCGGGGGAGGAAGTGTGAAGTCGCACGTTTGCTCTATCTGTCATAAATCGTTCGCCACCGGTCAAGCTCTCGGCGGCCACAAACGGTGCCACTACGAAGGAAAGAACGGAGGCGGTGTGAGTAGTAGCGTGTCGAATTCTGAAGATGTGGGGTCTACAAGCCACGTCAGCAGTGGCCACCGTGGGTTTGACCTCAACATACCGCCGATACCGGAATTCTCGATGGTCAACGGAGACGAAGAGGTGATGAGTCCTATGCCGGCGAAGAAACTCCGGTTTGACTTCCCGGAGAAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0042538 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0055062 GO:0055081 GO:0055083 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0072505 GO:0072506 GO:0080090 GO:0097159 GO:0097305 GO:0098771 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000112 GO:2000113 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

238

Amino Acids

25.25

Weight (kDa)

8.2

Isoelectric Point (pI)

72.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 89 - 114 1.6e-13 C2H2-type zinc finger
zf-C2H2_6 PF13912 148 - 171 9.7e-11 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 219
AccB1I GGYRCC 1 cut(s) 504
AccI GTMKAC 2 cut(s) 380, 572
AccII CGCG 1 cut(s) 183
AciI CCGC 4 cut(s) 420, 492, 531, 620
AcoI YGGCCR 2 cut(s) 493, 592
AcsI RAATTY 3 cut(s) 119, 553, 632
AcuI CTGAAG 1 cut(s) 579
AfiI CCNNNNNNNGG 1 cut(s) 420
AgeI ACCGGT 1 cut(s) 476
AgsI TTSAA 2 cut(s) 11, 59
AjiI CACGTC 2 cut(s) 402, 583
AjnI CCWGG 1 cut(s) 303
AjuI GAANNNNNNNTTGG 2 cut(s) 19, 51
AluBI AGCT 3 cut(s) 342, 376, 485
AluI AGCT 3 cut(s) 342, 376, 485
Alw26I GTCTC 3 cut(s) 140, 170, 645
AoxI GGCC 2 cut(s) 493, 592
ApoI RAATTY 3 cut(s) 119, 553, 632
AsiGI ACCGGT 1 cut(s) 476
AsuC2I CCSGG 1 cut(s) 704
AsuHPI GGTGA 3 cut(s) 222, 323, 673
BalI TGGCCA 1 cut(s) 594
BanI GGYRCC 1 cut(s) 504
BbsI GAAGAC 1 cut(s) 219
BccI CCATC 1 cut(s) 634
BciT130I CCWGG 1 cut(s) 305
BcnI CCSGG 1 cut(s) 704
BcoDI GTCTC 3 cut(s) 140, 170, 645
BfaI CTAG 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 219
BglII AGATCT 1 cut(s) 113
BisI GCNGC 1 cut(s) 493
BlsI GCNGC 1 cut(s) 494
Bme1390I CCNGG 2 cut(s) 305, 704
BmgBI CACGTC 2 cut(s) 402, 583
BmiI GGNNCC 1 cut(s) 506
BmrFI CCNGG 2 cut(s) 305, 704
BmsI GCATC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 219
BpuMI CCSGG 1 cut(s) 704
BsaBI GATNNNNATC 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 598
BsaWI WCCGGW 5 cut(s) 333, 413, 476, 628, 690
BsaXI ACNNNNNCTCC 4 cut(s) 417, 447, 519, 549
Bsc4I CCNNNNNNNGG 1 cut(s) 420
Bse118I RCCGGY 2 cut(s) 476, 676
Bse8I GATNNNNATC 1 cut(s) 112
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 598
BseGI GGATG 1 cut(s) 151
BseJI GATNNNNATC 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 420
BseRI GAGGAG 3 cut(s) 225, 237, 381
Bsh1236I CGCG 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 2 cut(s) 495, 594
BshNI GGYRCC 1 cut(s) 504
BshTI ACCGGT 1 cut(s) 476
BsiEI CGRYCG 1 cut(s) 127
BsiSI CCGG 8 cut(s) 334, 363, 414, 477, 629, 677, 691, 704
BslI CCNNNNNNNGG 1 cut(s) 420
BsmAI GTCTC 3 cut(s) 140, 170, 645
BsmBI CGTCTC 1 cut(s) 645
BsnI GGCC 2 cut(s) 495, 594
Bsp143I GATC 4 cut(s) 98, 107, 113, 261
Bsp68I TCGCGA 1 cut(s) 183
BspACI CCGC 4 cut(s) 420, 492, 531, 620
BspANI GGCC 2 cut(s) 495, 594
BspFNI CGCG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 506
BspMI ACCTGC 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 504
BsrFI RCCGGY 2 cut(s) 476, 676
BssAI RCCGGY 2 cut(s) 476, 676
BssECI CCNNGG 1 cut(s) 598
BssMI GATC 4 cut(s) 98, 107, 113, 261
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 4 cut(s) 128, 200, 504, 599
Bst6I CTCTTC 2 cut(s) 255, 651
BstC8I GCNNGC 2 cut(s) 181, 678
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 598
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 1 cut(s) 183
BstKTI GATC 4 cut(s) 101, 110, 116, 264
BstMAI GTCTC 3 cut(s) 140, 170, 645
BstMBI GATC 4 cut(s) 98, 107, 113, 261
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 585
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 2 cut(s) 303, 702
BstUI CGCG 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 113
BstXI CCANNNNNNTGG 1 cut(s) 311
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 2 cut(s) 495, 594
BtgI CCRYGG 1 cut(s) 598
BtrI CACGTC 2 cut(s) 402, 583
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 595
BtsIMutI CAGTG 1 cut(s) 595
BtuMI TCGCGA 1 cut(s) 183
BveI ACCTGC 1 cut(s) 219
Cac8I GCNNGC 2 cut(s) 181, 678
Cfr10I RCCGGY 2 cut(s) 476, 676
CseI GACGC 1 cut(s) 265
CspAI ACCGGT 1 cut(s) 476
CviAII CATG 2 cut(s) 80, 169
CviJI RGCY 7 cut(s) 308, 342, 376, 485, 495, 579, 594
CviKI_1 RGCY 7 cut(s) 308, 342, 376, 485, 495, 579, 594
DdeI CTNAG 1 cut(s) 102
DpnI GATC 4 cut(s) 100, 109, 115, 263
DpnII GATC 4 cut(s) 98, 107, 113, 261
EaeI YGGCCR 2 cut(s) 493, 592
Eam1104I CTCTTC 2 cut(s) 255, 651
EarI CTCTTC 2 cut(s) 255, 651
Eco57I CTGAAG 1 cut(s) 579
EcoRI GAATTC 3 cut(s) 119, 553, 632
EcoRII CCWGG 1 cut(s) 303
Esp3I CGTCTC 1 cut(s) 645
FaeI CATG 2 cut(s) 83, 172
FaiI YATR 8 cut(s) 81, 153, 163, 170, 410, 462, 617, 674
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FatI CATG 2 cut(s) 79, 168
FauI CCCGC 1 cut(s) 413
FblI GTMKAC 2 cut(s) 380, 572
Fnu4HI GCNGC 1 cut(s) 493
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 493
FspBI CTAG 1 cut(s) 71
GluI GCNGC 1 cut(s) 493
HaeIII GGCC 2 cut(s) 495, 594
HapII CCGG 8 cut(s) 334, 363, 414, 477, 629, 677, 691, 704
HgaI GACGC 1 cut(s) 265
Hin1II CATG 2 cut(s) 83, 172
HincII GTYRAC 2 cut(s) 381, 646
HindII GTYRAC 2 cut(s) 381, 646
HindIII AAGCTT 1 cut(s) 340
HinfI GANTC 4 cut(s) 49, 62, 133, 667
HpaII CCGG 8 cut(s) 334, 363, 414, 477, 629, 677, 691, 704
HphI GGTGA 3 cut(s) 222, 323, 673
Hpy166II GTNNAC 4 cut(s) 317, 381, 573, 646
Hpy188I TCNGA 5 cut(s) 42, 118, 132, 261, 559
Hpy188III TCNNGA 4 cut(s) 59, 111, 182, 637
Hpy8I GTNNAC 4 cut(s) 317, 381, 573, 646
Hpy99I CGWCG 2 cut(s) 188, 391
HpyAV CCTTC 2 cut(s) 225, 509
HpyCH4III ACNGT 4 cut(s) 128, 200, 504, 599
HpyCH4IV ACGT 3 cut(s) 401, 444, 582
HpyF10VI GCNNNNNNNGC 1 cut(s) 585
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 3 cut(s) 401, 444, 582
Hsp92II CATG 2 cut(s) 83, 172
KroI GCCGGC 1 cut(s) 676
KroNI GCCGGC 1 cut(s) 678
Kzo9I GATC 4 cut(s) 98, 107, 113, 261
LweI GCATC 1 cut(s) 33
MaeI CTAG 1 cut(s) 71
MaeII ACGT 3 cut(s) 401, 444, 582
MaeIII GTNAC 3 cut(s) 200, 281, 329
MalI GATC 4 cut(s) 100, 109, 115, 263
MboI GATC 4 cut(s) 98, 107, 113, 261
MboII GAAGA 8 cut(s) 27, 210, 213, 219, 242, 572, 668, 694
MflI RGATCY 1 cut(s) 113
MlsI TGGCCA 1 cut(s) 594
MluCI AATT 3 cut(s) 119, 553, 632
MluNI TGGCCA 1 cut(s) 594
MlyI GAGTC 3 cut(s) 43, 142, 676
Mox20I TGGCCA 1 cut(s) 594
MroNI GCCGGC 1 cut(s) 676
MscI TGGCCA 1 cut(s) 594
Msp20I TGGCCA 1 cut(s) 594
MspI CCGG 8 cut(s) 334, 363, 414, 477, 629, 677, 691, 704
MspR9I CCNGG 2 cut(s) 305, 704
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 585
NaeI GCCGGC 1 cut(s) 678
NciI CCSGG 1 cut(s) 704
NdeII GATC 4 cut(s) 98, 107, 113, 261
NgoMIV GCCGGC 1 cut(s) 676
NlaIII CATG 2 cut(s) 83, 172
NlaIV GGNNCC 1 cut(s) 506
NmeAIII GCCGAG 1 cut(s) 468
NmuCI GTSAC 3 cut(s) 200, 281, 329
NruI TCGCGA 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PdiI GCCGGC 1 cut(s) 678
PfeI GAWTC 1 cut(s) 62
PflFI GACNNNGTC 1 cut(s) 385
PfoI TCCNGGA 1 cut(s) 702
PinAI ACCGGT 1 cut(s) 476
PkrI GCNGC 1 cut(s) 494
PleI GAGTC 3 cut(s) 43, 141, 675
PpsI GAGTC 3 cut(s) 43, 141, 675
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 506
PsuI RGATCY 1 cut(s) 113
PsyI GACNNNGTC 1 cut(s) 385
RruI TCGCGA 1 cut(s) 183
SalI GTCGAC 1 cut(s) 379
SatI GCNGC 1 cut(s) 493
Sau3AI GATC 4 cut(s) 98, 107, 113, 261
SchI GAGTC 3 cut(s) 43, 142, 676
ScrFI CCNGG 2 cut(s) 305, 704
SfaNI GCATC 1 cut(s) 33
Sse9I AATT 3 cut(s) 119, 553, 632
SsiI CCGC 4 cut(s) 420, 492, 531, 620
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 303, 702
TaaI ACNGT 4 cut(s) 128, 200, 504, 599
TaiI ACGT 3 cut(s) 404, 447, 585
TaqI TCGA 4 cut(s) 123, 380, 551, 638
TasI AATT 3 cut(s) 119, 553, 632
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 1 cut(s) 62
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 3 cut(s) 200, 281, 329
Tsp45I GTSAC 3 cut(s) 200, 281, 329
TspDTI ATGAA 2 cut(s) 68, 162
TspGWI ACGGA 4 cut(s) 155, 201, 540, 663
TspRI CASTG 1 cut(s) 595
Tth111I GACNNNGTC 1 cut(s) 385
XapI RAATTY 3 cut(s) 119, 553, 632
XcmI CCANNNNNNNNNTGG 2 cut(s) 311, 587
XmiI GTMKAC 2 cut(s) 380, 572
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.