Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007703

Physical Location & Seq

Genomic Coordinates Reverse (-)

51850076 .. 51850354

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0371800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCGGTGGCTTCGATCAAAGAGGCTGAAATCCGGCCATTGTTTGAGCGTCTGTTCAAGAGAGTTGAGGAAGCAATGCAGAGTTGTACCGAGTTTGAATCCCTCATCGGAAATTTAAATTTCAAGTCCACGCTTGACCCTCTCCAACCATGGATCAAAGGAGAACGCAAGGGACTTGAGGACCTTGTGGACAAAGAATGTCTGGTTGACAGGGGCATAAAGGTAGTAGGCAAGTTCTCCAACGTTCAGATATCAGATATGGAAGTACTACTGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

92

Amino Acids

10.44

Weight (kDa)

4.99

Isoelectric Point (pI)

31.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27730 AT3G49930 AT5G04340 AT5G67450
fragaria_vesca	FvH4_2g33250
malus_domestica	MD01G1041900.v1.1 MD03G1122300.v1.1 MD08G1086500.v1.1 MD15G1071400.v1.1
prunus_persica	Prupe.1G424300_v2.0.a1
pyrus_communis	pycom08g07100 pycom15g06720
rosa_chinensis	RchiOBHm_Chr6g0309391
rosa_laevigata	RLG00000010570
rosa_multiflora	Rmu_co8321009.1_g000001 Rmu_sc0012466.1_g000004 Rmu_sc0017306.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159440
rosa_rugosa	Rorug06G0371800
rosa_samantha	Rh6AG484900 Rh6BG494100 Rh6CG499000 Rh6DG485300
rosa_wichuraiana	Rw6G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclI	AACGTT	1 cut(s)	243
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	35
AcsI	RAATTY	2 cut(s)	112, 118
AfaI	GTAC	2 cut(s)	88, 267
AgsI	TTSAA	3 cut(s)	58, 98, 124
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	1 cut(s)	35
ApoI	RAATTY	2 cut(s)	112, 118
AspS9I	GGNCC	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	181
BmcAI	AGTACT	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	15, 153
Bsp19I	CCATGG	1 cut(s)	149
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	37
BspPI	GGATC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	2 cut(s)	15, 153
BssT1I	CCWWGG	1 cut(s)	149
BstDSI	CCRYGG	1 cut(s)	149
BstKTI	GATC	2 cut(s)	18, 156
BstMBI	GATC	2 cut(s)	15, 153
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	181
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	87, 266
CviAII	CATG	1 cut(s)	150
CviJI	RGCY	3 cut(s)	11, 26, 37
CviKI_1	RGCY	3 cut(s)	11, 26, 37
CviQI	GTAC	2 cut(s)	87, 266
DpnI	GATC	2 cut(s)	17, 155
DpnII	GATC	2 cut(s)	15, 153
DraI	TTTAAA	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	149
Eco32I	GATATC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	181
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRV	GATATC	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	1 cut(s)	153
FaiI	YATR	3 cut(s)	151, 218, 260
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	1 cut(s)	34
HgaI	GACGC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	1 cut(s)	34
Hpy166II	GTNNAC	3 cut(s)	129, 190, 208
Hpy188I	TCNGA	3 cut(s)	110, 249, 256
Hpy188III	TCNNGA	1 cut(s)	58
Hpy8I	GTNNAC	3 cut(s)	129, 190, 208
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	79
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	15, 153
LpnPI	CCDG	4 cut(s)	47, 188, 196, 257
MaeII	ACGT	1 cut(s)	243
MalI	GATC	2 cut(s)	17, 155
MboI	GATC	2 cut(s)	15, 153
MluCI	AATT	2 cut(s)	112, 118
MmeI	TCCRAC	2 cut(s)	169, 264
MnlI	CCTC	5 cut(s)	16, 61, 113, 150, 172
MseI	TTAA	1 cut(s)	116
MspI	CCGG	1 cut(s)	34
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	2 cut(s)	15, 153
NlaIII	CATG	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	98
PpuMI	RGGWCCY	1 cut(s)	181
Psp1406I	AACGTT	1 cut(s)	243
Psp5II	RGGWCCY	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	181
PspPPI	RGGWCCY	1 cut(s)	181
RsaI	GTAC	2 cut(s)	88, 267
RsaNI	GTAC	2 cut(s)	87, 266
SaqAI	TTAA	1 cut(s)	116
Sau3AI	GATC	2 cut(s)	15, 153
Sau96I	GGNCC	1 cut(s)	181
ScaI	AGTACT	1 cut(s)	267
SetI	ASST	3 cut(s)	186, 225, 246
SinI	GGWCC	1 cut(s)	181
SmiI	ATTTAAAT	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	2 cut(s)	112, 118
SsiI	CCGC	1 cut(s)	5
StyI	CCWWGG	1 cut(s)	149
SwaI	ATTTAAAT	1 cut(s)	117
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	14
TasI	AATT	2 cut(s)	112, 118
TatI	WGTACW	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	2 cut(s)	112, 118
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.