AT3G49930

Zinc finger protein AZF1-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
18510056 .. 18511136
1081 bp
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UTR
Exon/CDS
Intron
AT3G49930.1

Sequence Viewer

Length: 648 bp
ATGGCTCTCGACACTCTCAATTCTCCCACCTCCACCACCACAACCACCGCTCCTCCTCCTTTCCTCCGTTGCCTCGACGAAACCGAGCCCGAAAACCTCGAATCATGGACCAAAAGAAAACGTACAAAACGTCACCGTATAGATCAACCAAACCCTCCTCCTTCTGAAGAAGAGTATCTCGCTCTTTGCCTCCTTATGCTCGCTCGTGGCTCCTCCGATCATCACTCTCCACCGTCGGATCATCACTCTCTTTCTCCACTGTCCGATCATCAGAAAGATTACAAGTGTTCCGTCTGTGGCAAATCTTTCCCGTCTTACCAAGCGTTAGGTGGACACAAAACAAGTCACCGGAAACCGGTTAGTGTCGATGTTAATAATAGTAACGGAACCGTTACTAATAACGGAAATATTAGTAACGGTTTAGTTGGTCAAAGTGGGAAGACTCATAACTGCTCTATATGTTTTAAGTCGTTTCCCTCTGGTCAAGCATTGGGTGGTCACAAACGTTGTCACTATGATGGTGGTAACGGTAACAGTAACGGTGACAATAGCCACAAGTTTGACCTAAATTTACCGGCTGATCAAGTTAGTGATGAGACAATTGGAAAAAGTCAACTCTCCGGTGAAGAAACAAAGTCGGTGTTGTGA

Protein Analysis

215

Amino Acids

23.31

Weight (kDa)

6.85

Isoelectric Point (pI)

55.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 94 - 119 8.9e-15 C2H2-type zinc finger
zf-C2H2_6 PF13912 149 - 173 4.9e-11 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 50
AciI CCGC 1 cut(s) 48
AclI AACGTT 1 cut(s) 505
AclWI GGATC 1 cut(s) 246
AcsI RAATTY 1 cut(s) 568
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 1 cut(s) 124
AfiI CCNNNNNNNGG 1 cut(s) 355
AgeI ACCGGT 1 cut(s) 355
Alw26I GTCTC 1 cut(s) 590
AlwI GGATC 1 cut(s) 246
ApoI RAATTY 1 cut(s) 568
AsiGI ACCGGT 1 cut(s) 355
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 4 cut(s) 125, 338, 554, 635
AvaII GGWCC 1 cut(s) 108
BanII GRGCYC 1 cut(s) 90
BauI CACGAG 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 446
BccI CCATC 1 cut(s) 512
BclI TGATCA 1 cut(s) 580
BcoDI GTCTC 1 cut(s) 590
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 2 cut(s) 211, 388
BpiI GAAGAC 1 cut(s) 446
BsaWI WCCGGW 3 cut(s) 348, 355, 620
BsaXI ACNNNNNCTCC 4 cut(s) 34, 37, 64, 67
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse118I RCCGGY 2 cut(s) 355, 574
BseLI CCNNNNNNNGG 1 cut(s) 355
BseRI GAGGAG 4 cut(s) 42, 45, 147, 202
BshTI ACCGGT 1 cut(s) 355
BsiSI CCGG 4 cut(s) 349, 356, 575, 621
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 1 cut(s) 590
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 5 cut(s) 142, 217, 238, 265, 580
BspACI CCGC 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 211, 388
BspPI GGATC 1 cut(s) 246
BsrBI CCGCTC 1 cut(s) 50
BsrFI RCCGGY 2 cut(s) 355, 574
BssAI RCCGGY 2 cut(s) 355, 574
BssMI GATC 5 cut(s) 142, 217, 238, 265, 580
BssSI CACGAG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 204
Bst4CI ACNGT 8 cut(s) 137, 234, 261, 391, 419, 530, 536, 542
Bst6I CTCTTC 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 201
BstKTI GATC 5 cut(s) 145, 220, 241, 268, 583
BstMAI GTCTC 1 cut(s) 590
BstMBI GATC 5 cut(s) 142, 217, 238, 265, 580
BstV2I GAAGAC 1 cut(s) 446
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 1 cut(s) 201
Cfr10I RCCGGY 2 cut(s) 355, 574
Cfr13I GGNCC 1 cut(s) 108
Csp6I GTAC 1 cut(s) 123
CspAI ACCGGT 1 cut(s) 355
CviAII CATG 1 cut(s) 105
CviJI RGCY 5 cut(s) 5, 88, 210, 552, 578
CviKI_1 RGCY 5 cut(s) 5, 88, 210, 552, 578
CviQI GTAC 1 cut(s) 123
DpnI GATC 5 cut(s) 144, 219, 240, 267, 582
DpnII GATC 5 cut(s) 142, 217, 238, 265, 580
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 90
FaeI CATG 1 cut(s) 108
FaiI YATR 7 cut(s) 106, 140, 197, 447, 458, 460, 516
FatI CATG 1 cut(s) 104
FbaI TGATCA 1 cut(s) 580
FriOI GRGCYC 1 cut(s) 90
HapII CCGG 4 cut(s) 349, 356, 575, 621
Hin1II CATG 1 cut(s) 108
HincII GTYRAC 1 cut(s) 614
HindII GTYRAC 1 cut(s) 614
HinfI GANTC 2 cut(s) 101, 442
HpaII CCGG 4 cut(s) 349, 356, 575, 621
HphI GGTGA 4 cut(s) 125, 338, 554, 635
Hpy166II GTNNAC 2 cut(s) 332, 614
Hpy188I TCNGA 5 cut(s) 166, 217, 238, 265, 273
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 2 cut(s) 332, 614
Hpy99I CGWCG 2 cut(s) 80, 238
HpyAV CCTTC 1 cut(s) 171
HpyCH4III ACNGT 8 cut(s) 137, 234, 261, 391, 419, 530, 536, 542
HpyCH4IV ACGT 3 cut(s) 121, 130, 505
HpySE526I ACGT 3 cut(s) 121, 130, 505
Hsp92II CATG 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 5 cut(s) 142, 217, 238, 265, 580
LmnI GCTCC 2 cut(s) 55, 215
LpnPI CCDG 5 cut(s) 362, 369, 465, 588, 634
MaeII ACGT 3 cut(s) 121, 130, 505
MalI GATC 5 cut(s) 144, 219, 240, 267, 582
MbiI CCGCTC 1 cut(s) 50
MboI GATC 5 cut(s) 142, 217, 238, 265, 580
MboII GAAGA 4 cut(s) 179, 182, 451, 638
MfeI CAATTG 1 cut(s) 600
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 3 cut(s) 19, 568, 600
MlyI GAGTC 1 cut(s) 436
MmeI TCCRAC 1 cut(s) 216
MseI TTAA 2 cut(s) 372, 465
MslI CAYNNNNRTG 1 cut(s) 516
MspI CCGG 4 cut(s) 349, 356, 575, 621
MunI CAATTG 1 cut(s) 600
NdeII GATC 5 cut(s) 142, 217, 238, 265, 580
NlaIII CATG 1 cut(s) 108
NlaIV GGNNCC 2 cut(s) 211, 388
NmuCI GTSAC 5 cut(s) 131, 344, 497, 509, 542
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 127
PfeI GAWTC 1 cut(s) 101
PinAI ACCGGT 1 cut(s) 355
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
Psp1406I AACGTT 1 cut(s) 505
PspN4I GGNNCC 2 cut(s) 211, 388
PspPI GGNCC 1 cut(s) 108
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 516
SaqAI TTAA 2 cut(s) 372, 465
Sau3AI GATC 5 cut(s) 142, 217, 238, 265, 580
Sau96I GGNCC 1 cut(s) 108
SchI GAGTC 1 cut(s) 436
SduI GDGCHC 1 cut(s) 90
SetI ASST 7 cut(s) 32, 99, 124, 133, 331, 508, 567
SinI GGWCC 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 516
Sse9I AATT 3 cut(s) 19, 568, 600
SsiI CCGC 1 cut(s) 48
SspI AATATT 1 cut(s) 409
TaaI ACNGT 8 cut(s) 137, 234, 261, 391, 419, 530, 536, 542
TaiI ACGT 3 cut(s) 124, 133, 508
TaqI TCGA 4 cut(s) 9, 75, 99, 366
TasI AATT 3 cut(s) 19, 568, 600
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 2 cut(s) 372, 465
Tru9I TTAA 2 cut(s) 372, 465
TscAI CASTG 1 cut(s) 264
TseFI GTSAC 5 cut(s) 131, 344, 497, 509, 542
Tsp45I GTSAC 5 cut(s) 131, 344, 497, 509, 542
TspGWI ACGGA 4 cut(s) 56, 280, 399, 417
TspRI CASTG 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 108
XapI RAATTY 1 cut(s) 568
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.