pycom08g07100

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
5717988 .. 5718806
819 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g07100.1

Sequence Viewer

Length: 819 bp
ATGGCTCTGCAAGCTCTCAACTCGCCAACACTCGCCGGATCGTCTCCTTTCCAGCTCGAGACCAAAGCCTCGAGCTTCAGCTATGTCGAGCCGTGGACCAAACGCAAGCGTTCCAAGCGTCCACGCCTTGACACCTCTCATACCGAGGAGGAGGAGTACCTCGCCCTCTGCCTCATCATGCTCGCCCGCGGTAATAGAGATGGAGACCTCGCCGATACCATGGCCACTAAAGCAACAACCTCCGCCGCCTCACACCAGATCATCACTCAATCCCCTTCTATGGAGCCCTCCACGTCAGCAGCGCCGCCGGCTAACCTGAGCTACAAGTGCTCTGTTTGCGACAAGAGCTTCTCTTCTTACCAGGCCCTCGGAGGACACAAGGCCAGCCACCGAAAAGGCTCTGCTGCCGGATCGGCCGTCGAAGGCCCGTCCACGTCCTCAACCACCACAACCTCCGCCACCACCACCGCCACCCCTTCGGGAAGGTCCCACGAGTGCTCCATATGCCACAAGTCTTTCCCGACCGGTCAAGCCTTGGGCGGCCACAAGCGCTGCCACTACGATGGCGGCGCCGCAGGATCCACCGCTACCACAAGCGCTATAACTTCCTCTGAGGGAGTCGGGTCAACTTCTCACGCGGTCAGCCACGGCCACCCCCGAGAGACGTTTGACCTGAACCTGCCGGCGCTGCCCGACTTCTCCCGCGACTTCTTCGTATCCGGCGAGGACGAGGTGGAGAGCCCACACCCGACGAAGAAGCCCAGGCTCCTGCTGATGGTGAAGCCCAAAATGGAGATTTCACAGGACCAACAAAATTAG

Protein Analysis

273

Amino Acids

28.82

Weight (kDa)

7.71

Isoelectric Point (pI)

58.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 108 - 132 1.3e-13 C2H2-type zinc finger
zf-C2H2_6 PF13912 164 - 188 4.2e-12 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 687
AccB1I GGYRCC 1 cut(s) 569
AccII CGCG 3 cut(s) 189, 638, 705
AclWI GGATC 4 cut(s) 46, 418, 573, 586
AcoI YGGCCR 4 cut(s) 222, 414, 541, 649
AcuI CTGAAG 1 cut(s) 61
AcyI GRCGYC 1 cut(s) 570
AfaI GTAC 1 cut(s) 158
AfeI AGCGCT 2 cut(s) 551, 598
AfiI CCNNNNNNNGG 2 cut(s) 280, 775
AgeI ACCGGT 1 cut(s) 524
AjiI CACGTC 2 cut(s) 294, 435
AjnI CCWGG 2 cut(s) 360, 761
AluBI AGCT 6 cut(s) 14, 55, 75, 81, 321, 348
AluI AGCT 6 cut(s) 14, 55, 75, 81, 321, 348
Alw21I GWGCWC 2 cut(s) 332, 500
Alw26I GTCTC 4 cut(s) 48, 53, 198, 656
AlwI GGATC 4 cut(s) 46, 418, 573, 586
Ama87I CYCGRG 3 cut(s) 56, 70, 657
Aor51HI AGCGCT 2 cut(s) 551, 598
AoxI GGCC 7 cut(s) 222, 363, 381, 414, 424, 541, 649
ApeKI GCWGC 4 cut(s) 299, 404, 552, 688
AsiGI ACCGGT 1 cut(s) 524
AspLEI GCGC 5 cut(s) 304, 552, 572, 599, 688
AspS9I GGNCC 5 cut(s) 96, 364, 425, 486, 805
AsuHPI GGTGA 1 cut(s) 790
AvaI CYCGRG 3 cut(s) 56, 70, 657
AvaII GGWCC 3 cut(s) 96, 486, 805
BalI TGGCCA 1 cut(s) 224
BamHI GGATCC 1 cut(s) 578
BanI GGYRCC 1 cut(s) 569
BanII GRGCYC 2 cut(s) 288, 743
BauI CACGAG 1 cut(s) 491
Bbv12I GWGCWC 2 cut(s) 332, 500
BbvI GCAGC 4 cut(s) 311, 391, 539, 675
BccI CCATC 3 cut(s) 194, 557, 769
BceAI ACGGC 3 cut(s) 76, 401, 664
BciT130I CCWGG 2 cut(s) 362, 763
BciVI GTATCC 1 cut(s) 727
BcoDI GTCTC 4 cut(s) 48, 53, 198, 656
BfoI RGCGCY 5 cut(s) 305, 553, 573, 600, 689
BfuAI ACCTGC 1 cut(s) 687
BfuI GTATCC 1 cut(s) 727
BglI GCCNNNNNGGC 1 cut(s) 413
BisI GCNGC 9 cut(s) 246, 300, 305, 405, 541, 553, 568, 573, 689
BlsI GCNGC 9 cut(s) 247, 301, 306, 406, 542, 554, 569, 574, 690
Bme1390I CCNGG 2 cut(s) 362, 763
Bme18I GGWCC 3 cut(s) 96, 486, 805
BmeT110I CYCGRG 3 cut(s) 56, 70, 657
BmgBI CACGTC 2 cut(s) 294, 435
BmgT120I GGNCC 5 cut(s) 96, 364, 425, 486, 805
BmiI GGNNCC 5 cut(s) 285, 488, 571, 580, 767
BmrFI CCNGG 2 cut(s) 362, 763
Bpu10I CCTNAGC 1 cut(s) 317
BsaHI GRCGYC 1 cut(s) 570
BsaI GGTCTC 2 cut(s) 53, 198
BsaJI CCNNGG 8 cut(s) 92, 144, 187, 219, 367, 534, 646, 761
BsaWI WCCGGW 1 cut(s) 524
BsaXI ACNNNNNCTCC 4 cut(s) 140, 170, 482, 512
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 775
Bse118I RCCGGY 3 cut(s) 307, 524, 682
BseBI CCWGG 2 cut(s) 362, 763
BseDI CCNNGG 8 cut(s) 92, 144, 187, 219, 367, 534, 646, 761
BseLI CCNNNNNNNGG 2 cut(s) 280, 775
BseMII CTCAG 2 cut(s) 308, 603
BseRI GAGGAG 3 cut(s) 161, 164, 167
BseX3I CGGCCG 1 cut(s) 414
BseXI GCAGC 4 cut(s) 311, 391, 539, 675
Bsh1236I CGCG 3 cut(s) 189, 638, 705
Bsh1285I CGRYCG 2 cut(s) 417, 525
BshFI GGCC 7 cut(s) 224, 365, 383, 416, 426, 543, 651
BshNI GGYRCC 1 cut(s) 569
BshTI ACCGGT 1 cut(s) 524
BsiEI CGRYCG 2 cut(s) 417, 525
BsiHKAI GWGCWC 2 cut(s) 332, 500
BsiHKCI CYCGRG 3 cut(s) 56, 70, 657
BsiSI CCGG 6 cut(s) 36, 308, 408, 525, 683, 720
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 2 cut(s) 280, 775
BsmAI GTCTC 4 cut(s) 48, 53, 198, 656
BsmBI CGTCTC 2 cut(s) 48, 656
BsmFI GGGAC 1 cut(s) 472
BsnI GGCC 7 cut(s) 224, 365, 383, 416, 426, 543, 651
Bso31I GGTCTC 2 cut(s) 53, 198
BsoBI CYCGRG 3 cut(s) 56, 70, 657
Bsp1286I GDGCHC 4 cut(s) 288, 332, 500, 743
Bsp143I GATC 4 cut(s) 38, 258, 410, 578
Bsp19I CCATGG 1 cut(s) 219
BspANI GGCC 7 cut(s) 224, 365, 383, 416, 426, 543, 651
BspCNI CTCAG 2 cut(s) 309, 604
BspFNI CGCG 3 cut(s) 189, 638, 705
BspLI GGNNCC 5 cut(s) 285, 488, 571, 580, 767
BspMI ACCTGC 1 cut(s) 687
BspPI GGATC 4 cut(s) 46, 418, 573, 586
BspT107I GGYRCC 1 cut(s) 569
BspTNI GGTCTC 2 cut(s) 53, 198
BsrFI RCCGGY 3 cut(s) 307, 524, 682
BssAI RCCGGY 3 cut(s) 307, 524, 682
BssECI CCNNGG 8 cut(s) 92, 144, 187, 219, 367, 534, 646, 761
BssMI GATC 4 cut(s) 38, 258, 410, 578
BssNI GRCGYC 1 cut(s) 570
BssSI CACGAG 1 cut(s) 491
BssT1I CCWWGG 2 cut(s) 219, 534
Bst2BI CACGAG 1 cut(s) 491
Bst2UI CCWGG 2 cut(s) 362, 763
Bst6I CTCTTC 1 cut(s) 358
BstACI GRCGYC 1 cut(s) 570
BstC8I GCNNGC 7 cut(s) 12, 107, 183, 187, 309, 385, 684
BstDEI CTNAG 2 cut(s) 317, 612
BstDSI CCRYGG 4 cut(s) 92, 187, 219, 646
BstFNI CGCG 3 cut(s) 189, 638, 705
BstH2I RGCGCY 5 cut(s) 305, 553, 573, 600, 689
BstHHI GCGC 5 cut(s) 304, 552, 572, 599, 688
BstKTI GATC 4 cut(s) 41, 261, 413, 581
BstMAI GTCTC 4 cut(s) 48, 53, 198, 656
BstMBI GATC 4 cut(s) 38, 258, 410, 578
BstMCI CGRYCG 2 cut(s) 417, 525
BstNI CCWGG 2 cut(s) 362, 763
BstSCI CCNGG 2 cut(s) 360, 761
BstUI CGCG 3 cut(s) 189, 638, 705
BstV1I GCAGC 4 cut(s) 311, 391, 539, 675
BstX2I RGATCY 1 cut(s) 578
BstXI CCANNNNNNTGG 1 cut(s) 563
BstYI RGATCY 1 cut(s) 578
BstZI CGGCCG 1 cut(s) 414
BsuI GTATCC 1 cut(s) 727
BsuRI GGCC 7 cut(s) 224, 365, 383, 416, 426, 543, 651
BtgI CCRYGG 4 cut(s) 92, 187, 219, 646
BtrI CACGTC 2 cut(s) 294, 435
BveI ACCTGC 1 cut(s) 687
Cac8I GCNNGC 7 cut(s) 12, 107, 183, 187, 309, 385, 684
CfoI GCGC 5 cut(s) 304, 552, 572, 599, 688
Cfr10I RCCGGY 3 cut(s) 307, 524, 682
Cfr13I GGNCC 5 cut(s) 96, 364, 425, 486, 805
Cfr42I CCGCGG 1 cut(s) 190
CseI GACGC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 157
CspAI ACCGGT 1 cut(s) 524
CviAII CATG 2 cut(s) 178, 220
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 2 cut(s) 317, 612
DinI GGCGCC 1 cut(s) 571
DpnI GATC 4 cut(s) 40, 260, 412, 580
DpnII GATC 4 cut(s) 38, 258, 410, 578
EaeI YGGCCR 4 cut(s) 222, 414, 541, 649
EagI CGGCCG 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 358
EciI GGCGGA 2 cut(s) 232, 445
EclXI CGGCCG 1 cut(s) 414
Eco130I CCWWGG 2 cut(s) 219, 534
Eco24I GRGCYC 2 cut(s) 288, 743
Eco31I GGTCTC 2 cut(s) 53, 198
Eco47I GGWCC 3 cut(s) 96, 486, 805
Eco47III AGCGCT 2 cut(s) 551, 598
Eco52I CGGCCG 1 cut(s) 414
Eco57I CTGAAG 1 cut(s) 61
Eco88I CYCGRG 3 cut(s) 56, 70, 657
EcoO109I RGGNCCY 2 cut(s) 364, 486
EcoRII CCWGG 2 cut(s) 360, 761
EcoT14I CCWWGG 2 cut(s) 219, 534
EcoT38I GRGCYC 2 cut(s) 288, 743
EgeI GGCGCC 1 cut(s) 571
EheI GGCGCC 1 cut(s) 571
ErhI CCWWGG 2 cut(s) 219, 534
Esp3I CGTCTC 2 cut(s) 48, 656
FaeI CATG 2 cut(s) 181, 223
FaiI YATR 8 cut(s) 84, 141, 179, 221, 281, 503, 505, 602
FaqI GGGAC 1 cut(s) 472
FatI CATG 2 cut(s) 177, 219
FauI CCCGC 2 cut(s) 194, 710
FauNDI CATATG 1 cut(s) 503
Fnu4HI GCNGC 9 cut(s) 246, 300, 305, 405, 541, 553, 568, 573, 689
FriOI GRGCYC 2 cut(s) 288, 743
Fsp4HI GCNGC 9 cut(s) 246, 300, 305, 405, 541, 553, 568, 573, 689
GlaI GCGC 5 cut(s) 303, 551, 571, 598, 687
GluI GCNGC 9 cut(s) 246, 300, 305, 405, 541, 553, 568, 573, 689
HaeII RGCGCY 5 cut(s) 305, 553, 573, 600, 689
HaeIII GGCC 7 cut(s) 224, 365, 383, 416, 426, 543, 651
HapII CCGG 6 cut(s) 36, 308, 408, 525, 683, 720
HgaI GACGC 1 cut(s) 107
HhaI GCGC 5 cut(s) 304, 552, 572, 599, 688
Hin1I GRCGYC 1 cut(s) 570
Hin1II CATG 2 cut(s) 181, 223
Hin6I GCGC 5 cut(s) 302, 550, 570, 597, 686
HinP1I GCGC 5 cut(s) 302, 550, 570, 597, 686
HincII GTYRAC 1 cut(s) 627
HindII GTYRAC 1 cut(s) 627
HinfI GANTC 1 cut(s) 618
HpaII CCGG 6 cut(s) 36, 308, 408, 525, 683, 720
HphI GGTGA 1 cut(s) 790
Hpy166II GTNNAC 4 cut(s) 96, 122, 432, 627
Hpy188I TCNGA 2 cut(s) 371, 613
Hpy188III TCNNGA 3 cut(s) 58, 480, 520
Hpy8I GTNNAC 4 cut(s) 96, 122, 432, 627
Hpy99I CGWCG 2 cut(s) 422, 754
HpyAV CCTTC 4 cut(s) 285, 416, 477, 486
HpyCH4IV ACGT 3 cut(s) 293, 434, 665
HpyCH4V TGCA 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 317, 612
HpySE526I ACGT 3 cut(s) 293, 434, 665
Hsp92I GRCGYC 1 cut(s) 570
Hsp92II CATG 2 cut(s) 181, 223
HspAI GCGC 5 cut(s) 302, 550, 570, 597, 686
KasI GGCGCC 1 cut(s) 569
KroI GCCGGC 2 cut(s) 307, 682
KroNI GCCGGC 2 cut(s) 309, 684
KspI CCGCGG 1 cut(s) 190
Kzo9I GATC 4 cut(s) 38, 258, 410, 578
LmnI GCTCC 3 cut(s) 283, 503, 771
Lsp1109I GCAGC 4 cut(s) 311, 391, 539, 675
MaeII ACGT 3 cut(s) 293, 434, 665
MalI GATC 4 cut(s) 40, 260, 412, 580
MboI GATC 4 cut(s) 38, 258, 410, 578
MboII GAAGA 3 cut(s) 345, 703, 766
MflI RGATCY 1 cut(s) 578
MhlI GDGCHC 4 cut(s) 288, 332, 500, 743
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 1 cut(s) 814
MluNI TGGCCA 1 cut(s) 224
Mly113I GGCGCC 1 cut(s) 570
MlyI GAGTC 1 cut(s) 627
Mox20I TGGCCA 1 cut(s) 224
MroNI GCCGGC 2 cut(s) 307, 682
MscI TGGCCA 1 cut(s) 224
MslI CAYNNNNRTG 1 cut(s) 561
Msp20I TGGCCA 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 189
MspI CCGG 6 cut(s) 36, 308, 408, 525, 683, 720
MspR9I CCNGG 2 cut(s) 362, 763
MvaI CCWGG 2 cut(s) 362, 763
MvnI CGCG 3 cut(s) 189, 638, 705
NaeI GCCGGC 2 cut(s) 309, 684
NarI GGCGCC 1 cut(s) 570
NcoI CCATGG 1 cut(s) 219
NdeI CATATG 1 cut(s) 503
NdeII GATC 4 cut(s) 38, 258, 410, 578
NgoMIV GCCGGC 2 cut(s) 307, 682
NlaIII CATG 2 cut(s) 181, 223
NlaIV GGNNCC 5 cut(s) 285, 488, 571, 580, 767
PaeR7I CTCGAG 2 cut(s) 56, 70
PcsI WCGNNNNNNNCGW 1 cut(s) 720
PdiI GCCGGC 2 cut(s) 309, 684
PinAI ACCGGT 1 cut(s) 524
PkrI GCNGC 9 cut(s) 247, 301, 306, 406, 542, 554, 569, 574, 690
PleI GAGTC 1 cut(s) 626
PluTI GGCGCC 1 cut(s) 573
PpsI GAGTC 1 cut(s) 626
PpuMI RGGWCCY 1 cut(s) 486
Psp5II RGGWCCY 1 cut(s) 486
Psp6I CCWGG 2 cut(s) 360, 761
PspGI CCWGG 2 cut(s) 360, 761
PspN4I GGNNCC 5 cut(s) 285, 488, 571, 580, 767
PspPI GGNCC 5 cut(s) 96, 364, 425, 486, 805
PspPPI RGGWCCY 1 cut(s) 486
PspXI VCTCGAGB 1 cut(s) 70
PsuI RGATCY 1 cut(s) 578
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 561
SacII CCGCGG 1 cut(s) 190
SatI GCNGC 9 cut(s) 246, 300, 305, 405, 541, 553, 568, 573, 689
Sau3AI GATC 4 cut(s) 38, 258, 410, 578
Sau96I GGNCC 5 cut(s) 96, 364, 425, 486, 805
SchI GAGTC 1 cut(s) 627
ScrFI CCNGG 2 cut(s) 362, 763
SduI GDGCHC 4 cut(s) 288, 332, 500, 743
SfoI GGCGCC 1 cut(s) 571
Sfr274I CTCGAG 2 cut(s) 56, 70
Sfr303I CCGCGG 1 cut(s) 190
SgrBI CCGCGG 1 cut(s) 190
SinI GGWCC 3 cut(s) 96, 486, 805
SlaI CTCGAG 2 cut(s) 56, 70
SmiMI CAYNNNNRTG 1 cut(s) 561
SmlI CTYRAG 2 cut(s) 56, 70
SmoI CTYRAG 2 cut(s) 56, 70
Sse9I AATT 1 cut(s) 814
SspDI GGCGCC 1 cut(s) 569
StyD4I CCNGG 2 cut(s) 360, 761
StyI CCWWGG 2 cut(s) 219, 534
TaiI ACGT 3 cut(s) 296, 437, 668
TaqI TCGA 4 cut(s) 57, 71, 87, 420
TasI AATT 1 cut(s) 814
TauI GCSGC 5 cut(s) 248, 307, 543, 570, 575
TseI GCWGC 4 cut(s) 299, 404, 552, 688
VpaK11BI GGWCC 3 cut(s) 96, 486, 805
XhoI CTCGAG 2 cut(s) 56, 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.