Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007703

Physical Location & Seq

Genomic Coordinates Forward (+)

36578737 .. 36579899

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G424300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTCTCCAAGCTCTCAACTCTCCAACAACCGCAGGGGCCTCTCCTTTCCGCTTCGAAGAGGCCGCCAGTAAAATCAACTATGTCGAGCCCTGGACGAAACGCAAGCGTTCCAAGCGTCCACGCCTAGACAGCCCTTCCACCGAGGAGGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCGGTTCTGGAAGCACCTCTGCCGCCACTACGGCAACAAACTCCGCCGCCTCACACCACATGATCACCCAATCCCCTTCTAACGCCTCACATCAGGAGCCGTCCACGTCAGCACAGCCCCCGAAGCTGAGCTACAAGTGCTCTGTTTGCAACAAGGCCTTCCCTTCTTACCAAGCCCTCGGAGGGCACAAGGCCAGCCACAGAAAAGGCGCCGCTGGATCGGCCGCCGAAGGCCCTTCCACGTCATCAAACACCACCACTTCGGGCACCACCACTGTAACCGCTTCCGGCAGGACCCACGAATGCTCCATCTGCCACAAGTCCTTTCCCACCGGCCAGGCCTTGGGCGGGCACAAGCGCTGCCACTACGAAGGCGGCGTGGGCGCCTCCACAGCCACAGCGACGGCCACCACAACGAGCGCAGTGACTTCCTCGGAGGGAGTGGGGTCCACTTCCCACCAGGCGGTGAGCCACGGCCACCGCGAGACCTTTGACCTGAACATGCCCGCGCTGCCCGAGTTCTCTCGCGATTTCTTCTTGTGCGGCGAAGACGAGGTGGAGAGCCCTCACCCGGCGAAGAAGCCCAGGATATTGACGATCATGAAGCCCAAACAGGAGATTTCCCAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

273

Amino Acids

28.61

Weight (kDa)

8.96

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27730 AT3G49930 AT5G04340 AT5G67450
fragaria_vesca	FvH4_2g33250
malus_domestica	MD01G1041900.v1.1 MD03G1122300.v1.1 MD08G1086500.v1.1 MD15G1071400.v1.1
prunus_persica	Prupe.1G424300_v2.0.a1
pyrus_communis	pycom08g07100 pycom15g06720
rosa_chinensis	RchiOBHm_Chr6g0309391
rosa_laevigata	RLG00000010570
rosa_multiflora	Rmu_co8321009.1_g000001 Rmu_sc0012466.1_g000004 Rmu_sc0017306.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159440
rosa_rugosa	Rorug06G0371800
rosa_samantha	Rh6AG484900 Rh6BG494100 Rh6CG499000 Rh6DG485300
rosa_wichuraiana	Rw6G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	395, 452, 569
AccB7I	CCANNNNNTGG	1 cut(s)	529
AccII	CGCG	4 cut(s)	186, 669, 695, 714
AclWI	GGATC	1 cut(s)	412
AcoI	YGGCCR	4 cut(s)	408, 520, 591, 661
AcyI	GRCGYC	2 cut(s)	396, 570
AfaI	GTAC	1 cut(s)	155
AfeI	AGCGCT	1 cut(s)	545
AfiI	CCNNNNNNNGG	5 cut(s)	369, 529, 534, 649, 757
AjiI	CACGTC	2 cut(s)	294, 429
AjnI	CCWGG	4 cut(s)	92, 522, 645, 770
AluBI	AGCT	3 cut(s)	14, 313, 318
AluI	AGCT	3 cut(s)	14, 313, 318
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	1 cut(s)	412
Ama87I	CYCGRG	1 cut(s)	701
Aor51HI	AGCGCT	1 cut(s)	545
ApeKI	GCWGC	2 cut(s)	546, 697
AspLEI	GCGC	5 cut(s)	398, 546, 572, 608, 697
AspS9I	GGNCC	4 cut(s)	39, 419, 480, 633
AsuC2I	CCSGG	1 cut(s)	758
AsuHPI	GGTGA	3 cut(s)	244, 664, 746
AsuII	TTCGAA	1 cut(s)	57
AvaI	CYCGRG	1 cut(s)	701
AvaII	GGWCC	2 cut(s)	480, 633
BaeGI	GKGCMC	3 cut(s)	375, 455, 540
BanI	GGYRCC	3 cut(s)	395, 452, 569
BanII	GRGCYC	2 cut(s)	93, 752
BarI	GAAGNNNNNNTAC	2 cut(s)	302, 334
BbsI	GAAGAC	1 cut(s)	741
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	2 cut(s)	533, 684
BccI	CCATC	1 cut(s)	503
BceAI	ACGGC	4 cut(s)	234, 271, 606, 676
BciT130I	CCWGG	4 cut(s)	94, 524, 647, 772
BclI	TGATCA	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	758
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	1 cut(s)	128
BfoI	RGCGCY	3 cut(s)	399, 547, 573
BglI	GCCNNNNNGGC	1 cut(s)	218
BlpI	GCTNAGC	1 cut(s)	314
Bme1390I	CCNGG	5 cut(s)	94, 524, 647, 758, 772
Bme18I	GGWCC	2 cut(s)	480, 633
BmeT110I	CYCGRG	1 cut(s)	701
BmgBI	CACGTC	2 cut(s)	294, 429
BmgT120I	GGNCC	4 cut(s)	39, 419, 480, 633
BmiI	GGNNCC	7 cut(s)	40, 285, 397, 454, 482, 571, 634
BmrFI	CCNGG	5 cut(s)	94, 524, 647, 758, 772
BpiI	GAAGAC	1 cut(s)	741
Bpu1102I	GCTNAGC	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	758
BsaHI	GRCGYC	2 cut(s)	396, 570
BsaI	GGTCTC	1 cut(s)	665
BsaJI	CCNNGG	7 cut(s)	92, 144, 364, 528, 618, 658, 770
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	5 cut(s)	369, 529, 534, 649, 757
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	4 cut(s)	94, 524, 647, 772
BseDI	CCNNGG	7 cut(s)	92, 144, 364, 528, 618, 658, 770
BseLI	CCNNNNNNNGG	5 cut(s)	369, 529, 534, 649, 757
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	2 cut(s)	161, 164
BseSI	GKGCMC	3 cut(s)	375, 455, 540
BseX3I	CGGCCG	1 cut(s)	408
BseXI	GCAGC	2 cut(s)	533, 684
Bsh1236I	CGCG	4 cut(s)	186, 669, 695, 714
Bsh1285I	CGRYCG	1 cut(s)	411
BshNI	GGYRCC	3 cut(s)	395, 452, 569
BsiEI	CGRYCG	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	329
BsiHKCI	CYCGRG	1 cut(s)	701
BsiSI	CCGG	3 cut(s)	474, 519, 758
BslI	CCNNNNNNNGG	5 cut(s)	369, 529, 534, 649, 757
BsmAI	GTCTC	1 cut(s)	665
BsmI	GAATGC	1 cut(s)	494
Bso31I	GGTCTC	1 cut(s)	665
BsoBI	CYCGRG	1 cut(s)	701
Bsp119I	TTCGAA	1 cut(s)	57
Bsp1286I	GDGCHC	6 cut(s)	93, 329, 375, 455, 540, 752
Bsp143I	GATC	3 cut(s)	249, 404, 783
Bsp1720I	GCTNAGC	1 cut(s)	314
Bsp68I	TCGCGA	1 cut(s)	714
BspCNI	CTCAG	1 cut(s)	306
BspFNI	CGCG	4 cut(s)	186, 669, 695, 714
BspHI	TCATGA	1 cut(s)	786
BspLI	GGNNCC	7 cut(s)	40, 285, 397, 454, 482, 571, 634
BspPI	GGATC	1 cut(s)	412
BspT104I	TTCGAA	1 cut(s)	57
BspT107I	GGYRCC	3 cut(s)	395, 452, 569
BspTNI	GGTCTC	1 cut(s)	665
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	7 cut(s)	92, 144, 364, 528, 618, 658, 770
BssMI	GATC	3 cut(s)	249, 404, 783
BssNI	GRCGYC	2 cut(s)	396, 570
BssT1I	CCWWGG	1 cut(s)	528
Bst2UI	CCWGG	4 cut(s)	94, 524, 647, 772
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	1 cut(s)	54
BstACI	GRCGYC	2 cut(s)	396, 570
BstBI	TTCGAA	1 cut(s)	57
BstC8I	GCNNGC	6 cut(s)	107, 180, 184, 382, 536, 693
BstDEI	CTNAG	1 cut(s)	314
BstDSI	CCRYGG	1 cut(s)	658
BstFNI	CGCG	4 cut(s)	186, 669, 695, 714
BstH2I	RGCGCY	3 cut(s)	399, 547, 573
BstHHI	GCGC	5 cut(s)	398, 546, 572, 608, 697
BstKTI	GATC	3 cut(s)	252, 407, 786
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	3 cut(s)	249, 404, 783
BstMCI	CGRYCG	1 cut(s)	411
BstNI	CCWGG	4 cut(s)	94, 524, 647, 772
BstNSI	RCATGY	1 cut(s)	691
BstSCI	CCNGG	5 cut(s)	92, 522, 645, 756, 770
BstSLI	GKGCMC	3 cut(s)	375, 455, 540
BstUI	CGCG	4 cut(s)	186, 669, 695, 714
BstV1I	GCAGC	2 cut(s)	533, 684
BstV2I	GAAGAC	1 cut(s)	741
BstZI	CGGCCG	1 cut(s)	408
BtgI	CCRYGG	1 cut(s)	658
BtrI	CACGTC	2 cut(s)	294, 429
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	2 cut(s)	459, 615
BtuMI	TCGCGA	1 cut(s)	714
Cac8I	GCNNGC	6 cut(s)	107, 180, 184, 382, 536, 693
CciI	TCATGA	1 cut(s)	786
CfoI	GCGC	5 cut(s)	398, 546, 572, 608, 697
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	4 cut(s)	39, 419, 480, 633
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	4 cut(s)	175, 247, 688, 787
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	314
DinI	GGCGCC	2 cut(s)	397, 571
DpnI	GATC	3 cut(s)	251, 406, 785
DpnII	GATC	3 cut(s)	249, 404, 783
EaeI	YGGCCR	4 cut(s)	408, 520, 591, 661
EagI	CGGCCG	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	220
EclXI	CGGCCG	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	528
Eco147I	AGGCCT	2 cut(s)	344, 527
Eco24I	GRGCYC	2 cut(s)	93, 752
Eco31I	GGTCTC	1 cut(s)	665
Eco47I	GGWCC	2 cut(s)	480, 633
Eco47III	AGCGCT	1 cut(s)	545
Eco52I	CGGCCG	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	701
EcoO109I	RGGNCCY	3 cut(s)	39, 419, 480
EcoRII	CCWGG	4 cut(s)	92, 522, 645, 770
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	2 cut(s)	93, 752
EgeI	GGCGCC	2 cut(s)	397, 571
EheI	GGCGCC	2 cut(s)	397, 571
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	4 cut(s)	178, 250, 691, 790
FaiI	YATR	5 cut(s)	84, 176, 248, 689, 788
FatI	CATG	4 cut(s)	174, 246, 687, 786
FauI	CCCGC	2 cut(s)	527, 700
FbaI	TGATCA	1 cut(s)	249
FriOI	GRGCYC	2 cut(s)	93, 752
FspBI	CTAG	1 cut(s)	128
GlaI	GCGC	5 cut(s)	397, 545, 571, 607, 696
HaeII	RGCGCY	3 cut(s)	399, 547, 573
HapII	CCGG	3 cut(s)	474, 519, 758
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	5 cut(s)	398, 546, 572, 608, 697
Hin1I	GRCGYC	2 cut(s)	396, 570
Hin1II	CATG	4 cut(s)	178, 250, 691, 790
Hin6I	GCGC	5 cut(s)	396, 544, 570, 606, 695
HinP1I	GCGC	5 cut(s)	396, 544, 570, 606, 695
HpaII	CCGG	3 cut(s)	474, 519, 758
HphI	GGTGA	3 cut(s)	244, 664, 746
Hpy166II	GTNNAC	3 cut(s)	122, 291, 636
Hpy188I	TCNGA	2 cut(s)	368, 622
Hpy188III	TCNNGA	4 cut(s)	195, 281, 713, 787
Hpy8I	GTNNAC	3 cut(s)	122, 291, 636
Hpy99I	CGWCG	1 cut(s)	592
HpyAV	CCTTC	7 cut(s)	147, 273, 355, 360, 410, 432, 551
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4IV	ACGT	2 cut(s)	293, 428
HpyCH4V	TGCA	1 cut(s)	336
HpyF3I	CTNAG	1 cut(s)	314
HpySE526I	ACGT	2 cut(s)	293, 428
Hsp92I	GRCGYC	2 cut(s)	396, 570
Hsp92II	CATG	4 cut(s)	178, 250, 691, 790
HspAI	GCGC	5 cut(s)	396, 544, 570, 606, 695
KasI	GGCGCC	2 cut(s)	395, 569
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	249, 404, 783
LmnI	GCTCC	2 cut(s)	283, 497
Lsp1109I	GCAGC	2 cut(s)	533, 684
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	2 cut(s)	293, 428
MaeIII	GTNAC	2 cut(s)	463, 610
MalI	GATC	3 cut(s)	251, 406, 785
MboI	GATC	3 cut(s)	249, 404, 783
MboII	GAAGA	4 cut(s)	71, 712, 746, 775
MhlI	GDGCHC	6 cut(s)	93, 329, 375, 455, 540, 752
MluCI	AATT	1 cut(s)	814
Mly113I	GGCGCC	2 cut(s)	396, 570
MmeI	TCCRAC	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	3 cut(s)	474, 519, 758
MspR9I	CCNGG	5 cut(s)	94, 524, 647, 758, 772
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	4 cut(s)	94, 524, 647, 772
MvnI	CGCG	4 cut(s)	186, 669, 695, 714
NarI	GGCGCC	2 cut(s)	396, 570
NciI	CCSGG	1 cut(s)	758
NdeII	GATC	3 cut(s)	249, 404, 783
NlaIII	CATG	4 cut(s)	178, 250, 691, 790
NlaIV	GGNNCC	7 cut(s)	40, 285, 397, 454, 482, 571, 634
NmuCI	GTSAC	1 cut(s)	610
NruI	TCGCGA	1 cut(s)	714
NspI	RCATGY	1 cut(s)	691
NspV	TTCGAA	1 cut(s)	57
PagI	TCATGA	1 cut(s)	786
PceI	AGGCCT	2 cut(s)	344, 527
PcsI	WCGNNNNNNNCGW	2 cut(s)	561, 666
PctI	GAATGC	1 cut(s)	494
PflMI	CCANNNNNTGG	1 cut(s)	529
PluTI	GGCGCC	2 cut(s)	399, 573
PpuMI	RGGWCCY	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	480
Psp6I	CCWGG	4 cut(s)	92, 522, 645, 770
PspGI	CCWGG	4 cut(s)	92, 522, 645, 770
PspN4I	GGNNCC	7 cut(s)	40, 285, 397, 454, 482, 571, 634
PspPI	GGNCC	4 cut(s)	39, 419, 480, 633
PspPPI	RGGWCCY	1 cut(s)	480
RruI	TCGCGA	1 cut(s)	714
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
Sau3AI	GATC	3 cut(s)	249, 404, 783
Sau96I	GGNCC	4 cut(s)	39, 419, 480, 633
ScrFI	CCNGG	5 cut(s)	94, 524, 647, 758, 772
SduI	GDGCHC	6 cut(s)	93, 329, 375, 455, 540, 752
SfoI	GGCGCC	2 cut(s)	397, 571
SfuI	TTCGAA	1 cut(s)	57
SinI	GGWCC	2 cut(s)	480, 633
Sse9I	AATT	1 cut(s)	814
SseBI	AGGCCT	2 cut(s)	344, 527
SspDI	GGCGCC	2 cut(s)	395, 569
SspMI	CTAG	1 cut(s)	128
StuI	AGGCCT	2 cut(s)	344, 527
StyD4I	CCNGG	5 cut(s)	92, 522, 645, 756, 770
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	1 cut(s)	463
TaiI	ACGT	2 cut(s)	296, 431
TaqI	TCGA	2 cut(s)	57, 87
TasI	AATT	1 cut(s)	814
TauI	GCSGC	8 cut(s)	68, 189, 212, 236, 401, 413, 564, 732
TscAI	CASTG	2 cut(s)	466, 615
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	2 cut(s)	546, 697
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	1 cut(s)	803
TspRI	CASTG	2 cut(s)	466, 615
Van91I	CCANNNNNTGG	1 cut(s)	529
VpaK11BI	GGWCC	2 cut(s)	480, 633
XceI	RCATGY	1 cut(s)	691
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.