Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007703

Physical Location & Seq

Genomic Coordinates Forward (+)

11447271 .. 11447810

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1122300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAGCCCTCCACGTCAGCAGCACCGCCGGCTAACGTAAGCTACAAGTGCTCTGTTTGCGACAAGGGCTTCTCTTCTTACCAAGCACTGGGAGGACACAAGGCTAGCCACCGAAAAGGCTCTGCCGCTGGATCGGTCGTCAAAGGTCCGTCCACGTCCTCAACCACCACAACCTCCGCCACCACCACCGCCACCCCTTCGGGAAGGTCCCACCAGTGCTCCATATGCCACAAGTGTTTCCCCACCGGTCAAGCCTTGGGCGGCCACAAGCGCTGCCACTACAATGGCGGCGCCGCAGGATCCACCGCTACCACAAGCTCTATAACTTCCTCTGAGGGAGTCGCGTCAACTTCTCACGCAATCAGCCACGGCCACCCCCGAGAGACGTTTGACCTGAACCTGCCGGCGCTGCCCGAGTTCTCTCGCGACTTCTTCGTATCCGGCGAGGACGAGGTGGAGAGCCCCCACCCGACGAAGAAGCCCAGGCTTCTGCTGATGGTGAAGCCCAAAATGGAGATTTCACGGGACCAACAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

180

Amino Acids

18.7

Weight (kDa)

8.96

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	15 - 39	4.7e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	71 - 94	1.8e-08	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27730 AT3G49930 AT5G04340 AT5G67450
fragaria_vesca	FvH4_2g33250
malus_domestica	MD01G1041900.v1.1 MD03G1122300.v1.1 MD08G1086500.v1.1 MD15G1071400.v1.1
prunus_persica	Prupe.1G424300_v2.0.a1
pyrus_communis	pycom08g07100 pycom15g06720
rosa_chinensis	RchiOBHm_Chr6g0309391
rosa_laevigata	RLG00000010570
rosa_multiflora	Rmu_co8321009.1_g000001 Rmu_sc0012466.1_g000004 Rmu_sc0017306.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159440
rosa_rugosa	Rorug06G0371800
rosa_samantha	Rh6AG484900 Rh6BG494100 Rh6CG499000 Rh6DG485300
rosa_wichuraiana	Rw6G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	408
AccB1I	GGYRCC	1 cut(s)	290
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccII	CGCG	2 cut(s)	344, 426
AciI	CCGC	8 cut(s)	26, 126, 177, 189, 261, 288, 294, 306
AclWI	GGATC	3 cut(s)	139, 294, 307
AcoI	YGGCCR	2 cut(s)	262, 370
AcyI	GRCGYC	1 cut(s)	291
AfeI	AGCGCT	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgeI	ACCGGT	1 cut(s)	245
AjiI	CACGTC	2 cut(s)	15, 156
AjnI	CCWGG	1 cut(s)	482
AluBI	AGCT	2 cut(s)	42, 318
AluI	AGCT	2 cut(s)	42, 318
Alw21I	GWGCWC	2 cut(s)	53, 221
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	3 cut(s)	139, 294, 307
Ama87I	CYCGRG	2 cut(s)	378, 413
Aor51HI	AGCGCT	1 cut(s)	272
AoxI	GGCC	2 cut(s)	262, 370
ApeKI	GCWGC	3 cut(s)	20, 273, 409
AsiGI	ACCGGT	1 cut(s)	245
AspLEI	GCGC	3 cut(s)	273, 293, 409
AspS9I	GGNCC	3 cut(s)	146, 207, 526
AsuHPI	GGTGA	1 cut(s)	511
AsuNHI	GCTAGC	1 cut(s)	104
AvaI	CYCGRG	2 cut(s)	378, 413
AvaII	GGWCC	3 cut(s)	146, 207, 526
BamHI	GGATCC	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	2 cut(s)	9, 464
Bbv12I	GWGCWC	2 cut(s)	53, 221
BbvI	GCAGC	3 cut(s)	32, 260, 396
BccI	CCATC	1 cut(s)	490
BceAI	ACGGC	1 cut(s)	385
BciT130I	CCWGG	1 cut(s)	484
BciVI	GTATCC	1 cut(s)	448
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	1 cut(s)	105
BfoI	RGCGCY	3 cut(s)	274, 294, 410
BfuAI	ACCTGC	1 cut(s)	408
BfuI	GTATCC	1 cut(s)	448
BisI	GCNGC	7 cut(s)	21, 126, 262, 274, 289, 294, 410
BlsI	GCNGC	7 cut(s)	22, 127, 263, 275, 290, 295, 411
Bme1390I	CCNGG	1 cut(s)	484
Bme18I	GGWCC	3 cut(s)	146, 207, 526
BmeT110I	CYCGRG	2 cut(s)	378, 413
BmgBI	CACGTC	2 cut(s)	15, 156
BmgT120I	GGNCC	3 cut(s)	146, 207, 526
BmiI	GGNNCC	5 cut(s)	6, 209, 292, 301, 527
BmrFI	CCNGG	1 cut(s)	484
BmrI	ACTGGG	1 cut(s)	98
BmtI	GCTAGC	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	255, 367, 482
BsaWI	WCCGGW	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse118I	RCCGGY	3 cut(s)	28, 245, 403
Bse1I	ACTGG	2 cut(s)	93, 214
BseBI	CCWGG	1 cut(s)	484
BseDI	CCNNGG	3 cut(s)	255, 367, 482
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	2 cut(s)	93, 214
BseXI	GCAGC	3 cut(s)	32, 260, 396
Bsh1236I	CGCG	2 cut(s)	344, 426
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	264, 372
BshNI	GGYRCC	1 cut(s)	290
BshTI	ACCGGT	1 cut(s)	245
BsiEI	CGRYCG	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	53, 221
BsiHKCI	CYCGRG	2 cut(s)	378, 413
BsiSI	CCGG	4 cut(s)	29, 246, 404, 441
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	377
BsmBI	CGTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	264, 372
BsoBI	CYCGRG	2 cut(s)	378, 413
Bsp1286I	GDGCHC	4 cut(s)	9, 53, 221, 464
Bsp143I	GATC	2 cut(s)	131, 299
Bsp68I	TCGCGA	1 cut(s)	426
BspACI	CCGC	8 cut(s)	26, 126, 177, 189, 261, 288, 294, 306
BspANI	GGCC	2 cut(s)	264, 372
BspCNI	CTCAG	1 cut(s)	325
BspFNI	CGCG	2 cut(s)	344, 426
BspLI	GGNNCC	5 cut(s)	6, 209, 292, 301, 527
BspMI	ACCTGC	1 cut(s)	408
BspOI	GCTAGC	1 cut(s)	108
BspPI	GGATC	3 cut(s)	139, 294, 307
BspT107I	GGYRCC	1 cut(s)	290
BsrFI	RCCGGY	3 cut(s)	28, 245, 403
BsrI	ACTGG	2 cut(s)	93, 214
BssAI	RCCGGY	3 cut(s)	28, 245, 403
BssECI	CCNNGG	3 cut(s)	255, 367, 482
BssMI	GATC	2 cut(s)	131, 299
BssNI	GRCGYC	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	484
Bst6I	CTCTTC	1 cut(s)	79
BstACI	GRCGYC	1 cut(s)	291
BstC8I	GCNNGC	3 cut(s)	30, 106, 405
BstDEI	CTNAG	1 cut(s)	333
BstDSI	CCRYGG	1 cut(s)	367
BstFNI	CGCG	2 cut(s)	344, 426
BstH2I	RGCGCY	3 cut(s)	274, 294, 410
BstHHI	GCGC	3 cut(s)	273, 293, 409
BstKTI	GATC	2 cut(s)	134, 302
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	2 cut(s)	131, 299
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 48, 57, 66, 225, 270, 409
BstNI	CCWGG	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	482
BstUI	CGCG	2 cut(s)	344, 426
BstV1I	GCAGC	3 cut(s)	32, 260, 396
BstX2I	RGATCY	1 cut(s)	299
BstXI	CCANNNNNNTGG	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	299
BsuI	GTATCC	1 cut(s)	448
BsuRI	GGCC	2 cut(s)	264, 372
BtgI	CCRYGG	1 cut(s)	367
BtrI	CACGTC	2 cut(s)	15, 156
BtsIMutI	CAGTG	2 cut(s)	86, 221
BtuMI	TCGCGA	1 cut(s)	426
BveI	ACCTGC	1 cut(s)	408
Cac8I	GCNNGC	3 cut(s)	30, 106, 405
CfoI	GCGC	3 cut(s)	273, 293, 409
Cfr10I	RCCGGY	3 cut(s)	28, 245, 403
Cfr13I	GGNCC	3 cut(s)	146, 207, 526
CseI	GACGC	1 cut(s)	333
CspAI	ACCGGT	1 cut(s)	245
DdeI	CTNAG	1 cut(s)	333
DinI	GGCGCC	1 cut(s)	292
DpnI	GATC	2 cut(s)	133, 301
DpnII	GATC	2 cut(s)	131, 299
EaeI	YGGCCR	2 cut(s)	262, 370
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	2 cut(s)	9, 464
Eco47I	GGWCC	3 cut(s)	146, 207, 526
Eco47III	AGCGCT	1 cut(s)	272
Eco88I	CYCGRG	2 cut(s)	378, 413
EcoO109I	RGGNCCY	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	482
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	2 cut(s)	9, 464
EgeI	GGCGCC	1 cut(s)	292
EheI	GGCGCC	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	377
FaiI	YATR	3 cut(s)	224, 226, 323
FaqI	GGGAC	1 cut(s)	193
FauNDI	CATATG	1 cut(s)	224
Fnu4HI	GCNGC	7 cut(s)	21, 126, 262, 274, 289, 294, 410
FriOI	GRGCYC	2 cut(s)	9, 464
Fsp4HI	GCNGC	7 cut(s)	21, 126, 262, 274, 289, 294, 410
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	3 cut(s)	272, 292, 408
GluI	GCNGC	7 cut(s)	21, 126, 262, 274, 289, 294, 410
HaeII	RGCGCY	3 cut(s)	274, 294, 410
HaeIII	GGCC	2 cut(s)	264, 372
HapII	CCGG	4 cut(s)	29, 246, 404, 441
HgaI	GACGC	1 cut(s)	333
HhaI	GCGC	3 cut(s)	273, 293, 409
Hin1I	GRCGYC	1 cut(s)	291
Hin6I	GCGC	3 cut(s)	271, 291, 407
HinP1I	GCGC	3 cut(s)	271, 291, 407
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HinfI	GANTC	1 cut(s)	339
HpaII	CCGG	4 cut(s)	29, 246, 404, 441
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	2 cut(s)	153, 348
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	2 cut(s)	201, 425
Hpy8I	GTNNAC	2 cut(s)	153, 348
Hpy99I	CGWCG	1 cut(s)	475
HpyAV	CCTTC	2 cut(s)	198, 207
HpyCH4IV	ACGT	4 cut(s)	14, 36, 155, 386
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 48, 57, 66, 225, 270, 409
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	4 cut(s)	14, 36, 155, 386
Hsp92I	GRCGYC	1 cut(s)	291
HspAI	GCGC	3 cut(s)	271, 291, 407
KasI	GGCGCC	1 cut(s)	290
KroI	GCCGGC	2 cut(s)	28, 403
KroNI	GCCGGC	2 cut(s)	30, 405
Kzo9I	GATC	2 cut(s)	131, 299
LmnI	GCTCC	2 cut(s)	4, 224
Lsp1109I	GCAGC	3 cut(s)	32, 260, 396
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	4 cut(s)	14, 36, 155, 386
MalI	GATC	2 cut(s)	133, 301
MboI	GATC	2 cut(s)	131, 299
MboII	GAAGA	3 cut(s)	66, 424, 487
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	4 cut(s)	9, 53, 221, 464
MluCI	AATT	1 cut(s)	535
Mly113I	GGCGCC	1 cut(s)	291
MlyI	GAGTC	1 cut(s)	348
MnlI	CCTC	8 cut(s)	19, 86, 169, 184, 328, 340, 439, 445
MroNI	GCCGGC	2 cut(s)	28, 403
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	4 cut(s)	29, 246, 404, 441
MspR9I	CCNGG	1 cut(s)	484
MvaI	CCWGG	1 cut(s)	484
MvnI	CGCG	2 cut(s)	344, 426
MwoI	GCNNNNNNNGC	7 cut(s)	29, 48, 57, 66, 225, 270, 409
NaeI	GCCGGC	2 cut(s)	30, 405
NarI	GGCGCC	1 cut(s)	291
NdeI	CATATG	1 cut(s)	224
NdeII	GATC	2 cut(s)	131, 299
NgoMIV	GCCGGC	2 cut(s)	28, 403
NheI	GCTAGC	1 cut(s)	104
NlaIV	GGNNCC	5 cut(s)	6, 209, 292, 301, 527
NruI	TCGCGA	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PdiI	GCCGGC	2 cut(s)	30, 405
PflMI	CCANNNNNTGG	1 cut(s)	88
PinAI	ACCGGT	1 cut(s)	245
PkrI	GCNGC	7 cut(s)	22, 127, 263, 275, 290, 295, 411
PleI	GAGTC	1 cut(s)	347
PluTI	GGCGCC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	347
PpuMI	RGGWCCY	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	482
PspN4I	GGNNCC	5 cut(s)	6, 209, 292, 301, 527
PspPI	GGNCC	3 cut(s)	146, 207, 526
PspPPI	RGGWCCY	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	299
RruI	TCGCGA	1 cut(s)	426
RseI	CAYNNNNRTG	1 cut(s)	282
SatI	GCNGC	7 cut(s)	21, 126, 262, 274, 289, 294, 410
Sau3AI	GATC	2 cut(s)	131, 299
Sau96I	GGNCC	3 cut(s)	146, 207, 526
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	484
SduI	GDGCHC	4 cut(s)	9, 53, 221, 464
SfoI	GGCGCC	1 cut(s)	292
SinI	GGWCC	3 cut(s)	146, 207, 526
SmiMI	CAYNNNNRTG	1 cut(s)	282
Sse9I	AATT	1 cut(s)	535
SsiI	CCGC	8 cut(s)	26, 126, 177, 189, 261, 288, 294, 306
SspDI	GGCGCC	1 cut(s)	290
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	482
StyI	CCWWGG	1 cut(s)	255
TaiI	ACGT	4 cut(s)	17, 39, 158, 389
TaqII	GACCGA	1 cut(s)	124
TasI	AATT	1 cut(s)	535
TauI	GCSGC	4 cut(s)	128, 264, 291, 296
TscAI	CASTG	2 cut(s)	93, 221
TseI	GCWGC	3 cut(s)	20, 273, 409
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	2 cut(s)	93, 221
Van91I	CCANNNNNTGG	1 cut(s)	88
VpaK11BI	GGWCC	3 cut(s)	146, 207, 526
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.