Rw6G042230

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
65746324 .. 65747424
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G042230.1

Sequence Viewer

Length: 807 bp
ATGGCCCTCGAAGCTCTTAACTCTCCGACTGCCGCCGGCCAAGGCTTCCACTACGACGAGCCCAAGCTCCAGTACTCGGAGCCATGGACCAAGCGCAAGCGCTCCAAGCGTCCACGAAGCGTAGAGCAGACTCAAGTCTCTGAGGAGGAGTATCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGTGGTCACAGCGGAGGACCCATCACCGCCGCCGCCTCACACCGCAGTCAGTCTCCGGTTCCAAGTGTTTCTCCTGTCATTGAACAGGCCACGTCAGCACCGGCCAAGGAGAATCAGCTGCCCAGTTACAAGTGCTCTGTTTGTGACAAGACTTTTCCCTCGTACCAGGCTCTGGGTGGACACAAGGCCAGCCACAGGAAGGGCTCTTCCGCCGTCACCGGCGGCGAAGGGCCCTCCACGTCATCCACCACCACCACCACATCCGCCGCCACCGTCTCCAACGCCTCCGGTAGGTCCCACGAGTGCTCCATCTGCCACAAGTCTTTCCCCACCGGCCAGGCCTTGGGCGGACACAAGCGGTGCCACTACGAGGGCGGCGCCACCGCCACCAGGTCCGCCGCAACCACCAGCGCCGTGACCACCTCGGAGGGAGTGGGGTCTACCACTCACACCGTCAGCCAGAGCCACCAACACCGCGAAGCGTTTGATCTGAACTTACCGGCCTTCCCGGAGCCGTTGTCAAGGAATTTCTTCCTCTCCGGCGACGACGAGGTGGAGAGCCCACATCCGACGAAGAAGCCCCGTCTATTCATGACCCCTAAAGTTGAGATATCACTCAATTAG

Protein Analysis

268

Amino Acids

28.48

Weight (kDa)

8.72

Isoelectric Point (pI)

70.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 104 - 128 5.5e-14 C2H2-type zinc finger
zf-C2H2_6 PF13912 161 - 184 7.5e-12 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 543, 560
AccB7I CCANNNNNTGG 2 cut(s) 355, 526
AccI GTMKAC 1 cut(s) 623
AccII CGCG 2 cut(s) 183, 660
AcoI YGGCCR 3 cut(s) 37, 285, 517
AcsI RAATTY 1 cut(s) 709
AcyI GRCGYC 1 cut(s) 561
AfaI GTAC 2 cut(s) 74, 347
AfeI AGCGCT 1 cut(s) 101
AfiI CCNNNNNNNGG 8 cut(s) 76, 355, 378, 382, 474, 526, 553, 573
AgsI TTSAA 1 cut(s) 266
AjiI CACGTC 2 cut(s) 276, 423
AjnI CCWGG 3 cut(s) 348, 519, 572
AluBI AGCT 3 cut(s) 14, 67, 301
AluI AGCT 3 cut(s) 14, 67, 301
Alw21I GWGCWC 2 cut(s) 320, 491
Alw26I GTCTC 3 cut(s) 142, 240, 463
AlwNI CAGNNNCTG 1 cut(s) 355
Aor51HI AGCGCT 1 cut(s) 101
AoxI GGCC 9 cut(s) 3, 37, 270, 285, 369, 413, 517, 522, 684
ApaI GGGCCC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 709
Asp700I GAANNNNTTC 1 cut(s) 713
AspLEI GCGC 4 cut(s) 96, 102, 563, 596
AspS9I GGNCC 7 cut(s) 4, 87, 200, 413, 414, 477, 576
AsuC2I CCSGG 1 cut(s) 692
AsuHPI GGTGA 2 cut(s) 199, 391
AvaII GGWCC 4 cut(s) 87, 200, 477, 576
BaeGI GKGCMC 1 cut(s) 417
BanI GGYRCC 2 cut(s) 543, 560
BanII GRGCYC 4 cut(s) 63, 389, 417, 746
BauI CACGAG 1 cut(s) 482
Bbv12I GWGCWC 2 cut(s) 320, 491
BbvI GCAGC 1 cut(s) 288
BccI CCATC 2 cut(s) 212, 500
BceAI ACGGC 3 cut(s) 380, 581, 682
BciT130I CCWGG 3 cut(s) 350, 521, 574
BcnI CCSGG 1 cut(s) 692
BcoDI GTCTC 3 cut(s) 142, 240, 463
BfoI RGCGCY 3 cut(s) 103, 564, 597
BisI GCNGC 8 cut(s) 33, 213, 216, 302, 406, 450, 559, 582
BlsI GCNGC 8 cut(s) 34, 214, 217, 303, 407, 451, 560, 583
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 4 cut(s) 350, 521, 574, 692
Bme18I GGWCC 4 cut(s) 87, 200, 477, 576
BmgBI CACGTC 2 cut(s) 276, 423
BmgT120I GGNCC 7 cut(s) 4, 87, 200, 413, 414, 477, 576
BmiI GGNNCC 8 cut(s) 81, 202, 243, 415, 479, 545, 562, 696
BmrFI CCNGG 4 cut(s) 350, 521, 574, 692
BmrI ACTGGG 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 300
BoxI GACNNNNGTC 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 692
BsaHI GRCGYC 1 cut(s) 561
BsaJI CCNNGG 5 cut(s) 40, 83, 288, 525, 606
BsaWI WCCGGW 2 cut(s) 238, 470
BsaXI ACNNNNNCTCC 4 cut(s) 473, 503, 686, 716
Bsc4I CCNNNNNNNGG 8 cut(s) 76, 355, 378, 382, 474, 526, 553, 573
Bse118I RCCGGY 5 cut(s) 35, 283, 401, 515, 682
Bse1I ACTGG 2 cut(s) 70, 306
BseBI CCWGG 3 cut(s) 350, 521, 574
BseDI CCNNGG 5 cut(s) 40, 83, 288, 525, 606
BseGI GGATG 3 cut(s) 425, 443, 748
BseLI CCNNNNNNNGG 8 cut(s) 76, 355, 378, 382, 474, 526, 553, 573
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 2 cut(s) 70, 306
BseRI GAGGAG 2 cut(s) 158, 161
BseSI GKGCMC 1 cut(s) 417
BseXI GCAGC 1 cut(s) 288
Bsh1236I CGCG 2 cut(s) 183, 660
BshFI GGCC 9 cut(s) 5, 39, 272, 287, 371, 415, 519, 524, 686
BshNI GGYRCC 2 cut(s) 543, 560
BsiHKAI GWGCWC 2 cut(s) 320, 491
BsiSI CCGG 9 cut(s) 36, 239, 284, 402, 471, 516, 683, 692, 723
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 8 cut(s) 76, 355, 378, 382, 474, 526, 553, 573
BsmAI GTCTC 3 cut(s) 142, 240, 463
BsmBI CGTCTC 1 cut(s) 463
BsmFI GGGAC 1 cut(s) 463
BsnI GGCC 9 cut(s) 5, 39, 272, 287, 371, 415, 519, 524, 686
Bsp120I GGGCCC 1 cut(s) 413
Bsp1286I GDGCHC 6 cut(s) 63, 320, 389, 417, 491, 746
Bsp143I GATC 1 cut(s) 670
Bsp19I CCATGG 1 cut(s) 83
BspANI GGCC 9 cut(s) 5, 39, 272, 287, 371, 415, 519, 524, 686
BspCNI CTCAG 1 cut(s) 133
BspFNI CGCG 2 cut(s) 183, 660
BspHI TCATGA 1 cut(s) 774
BspLI GGNNCC 8 cut(s) 81, 202, 243, 415, 479, 545, 562, 696
BspQI GCTCTTC 1 cut(s) 394
BspT107I GGYRCC 2 cut(s) 543, 560
BsrFI RCCGGY 5 cut(s) 35, 283, 401, 515, 682
BsrI ACTGG 2 cut(s) 70, 306
BssAI RCCGGY 5 cut(s) 35, 283, 401, 515, 682
BssECI CCNNGG 5 cut(s) 40, 83, 288, 525, 606
BssMI GATC 1 cut(s) 670
BssNI GRCGYC 1 cut(s) 561
BssSI CACGAG 1 cut(s) 482
BssT1I CCWWGG 4 cut(s) 40, 83, 288, 525
Bst2BI CACGAG 1 cut(s) 482
Bst2UI CCWGG 3 cut(s) 350, 521, 574
Bst4CI ACNGT 2 cut(s) 457, 637
Bst6I CTCTTC 1 cut(s) 394
BstACI GRCGYC 1 cut(s) 561
BstC8I GCNNGC 5 cut(s) 37, 98, 177, 181, 373
BstDEI CTNAG 1 cut(s) 141
BstDSI CCRYGG 1 cut(s) 83
BstENI CCTNNNNNAGG 1 cut(s) 472
BstF5I GGATG 3 cut(s) 425, 443, 748
BstFNI CGCG 2 cut(s) 183, 660
BstH2I RGCGCY 3 cut(s) 103, 564, 597
BstHHI GCGC 4 cut(s) 96, 102, 563, 596
BstKTI GATC 1 cut(s) 673
BstMAI GTCTC 3 cut(s) 142, 240, 463
BstMBI GATC 1 cut(s) 670
BstMWI GCNNNNNNNGC 4 cut(s) 11, 106, 278, 495
BstNI CCWGG 3 cut(s) 350, 521, 574
BstPAI GACNNNNGTC 1 cut(s) 134
BstSCI CCNGG 4 cut(s) 348, 519, 572, 690
BstSLI GKGCMC 1 cut(s) 417
BstUI CGCG 2 cut(s) 183, 660
BstV1I GCAGC 1 cut(s) 288
BsuRI GGCC 9 cut(s) 5, 39, 272, 287, 371, 415, 519, 524, 686
BtgI CCRYGG 1 cut(s) 83
BtrI CACGTC 2 cut(s) 276, 423
BtsCI GGATG 3 cut(s) 425, 443, 748
Cac8I GCNNGC 5 cut(s) 37, 98, 177, 181, 373
CaiI CAGNNNCTG 1 cut(s) 355
CciI TCATGA 1 cut(s) 774
CfoI GCGC 4 cut(s) 96, 102, 563, 596
Cfr10I RCCGGY 5 cut(s) 35, 283, 401, 515, 682
Cfr13I GGNCC 7 cut(s) 4, 87, 200, 413, 414, 477, 576
CseI GACGC 1 cut(s) 98
CsiI ACCWGGT 1 cut(s) 572
Csp6I GTAC 2 cut(s) 73, 346
CviAII CATG 3 cut(s) 84, 172, 775
CviQI GTAC 2 cut(s) 73, 346
DdeI CTNAG 1 cut(s) 141
DinI GGCGCC 1 cut(s) 562
DpnI GATC 1 cut(s) 672
DpnII GATC 1 cut(s) 670
EaeI YGGCCR 3 cut(s) 37, 285, 517
Eam1104I CTCTTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 394
EciI GGCGGA 4 cut(s) 382, 436, 546, 568
Eco130I CCWWGG 4 cut(s) 40, 83, 288, 525
Eco147I AGGCCT 1 cut(s) 524
Eco24I GRGCYC 4 cut(s) 63, 389, 417, 746
Eco32I GATATC 1 cut(s) 795
Eco47I GGWCC 4 cut(s) 87, 200, 477, 576
Eco47III AGCGCT 1 cut(s) 101
EcoNI CCTNNNNNAGG 1 cut(s) 472
EcoO109I RGGNCCY 4 cut(s) 200, 413, 414, 477
EcoRII CCWGG 3 cut(s) 348, 519, 572
EcoRV GATATC 1 cut(s) 795
EcoT14I CCWWGG 4 cut(s) 40, 83, 288, 525
EcoT38I GRGCYC 4 cut(s) 63, 389, 417, 746
EgeI GGCGCC 1 cut(s) 562
EheI GGCGCC 1 cut(s) 562
ErhI CCWWGG 4 cut(s) 40, 83, 288, 525
Esp3I CGTCTC 1 cut(s) 463
FaeI CATG 3 cut(s) 87, 175, 778
FaiI YATR 3 cut(s) 85, 173, 776
FaqI GGGAC 1 cut(s) 463
FatI CATG 3 cut(s) 83, 171, 774
FblI GTMKAC 1 cut(s) 623
Fnu4HI GCNGC 8 cut(s) 33, 213, 216, 302, 406, 450, 559, 582
FokI GGATG 3 cut(s) 412, 430, 735
FriOI GRGCYC 4 cut(s) 63, 389, 417, 746
Fsp4HI GCNGC 8 cut(s) 33, 213, 216, 302, 406, 450, 559, 582
GlaI GCGC 4 cut(s) 95, 101, 562, 595
GluI GCNGC 8 cut(s) 33, 213, 216, 302, 406, 450, 559, 582
GsuI CTGGAG 1 cut(s) 53
HaeII RGCGCY 3 cut(s) 103, 564, 597
HaeIII GGCC 9 cut(s) 5, 39, 272, 287, 371, 415, 519, 524, 686
HapII CCGG 9 cut(s) 36, 239, 284, 402, 471, 516, 683, 692, 723
HgaI GACGC 1 cut(s) 98
HhaI GCGC 4 cut(s) 96, 102, 563, 596
Hin1I GRCGYC 1 cut(s) 561
Hin1II CATG 3 cut(s) 87, 175, 778
Hin6I GCGC 4 cut(s) 94, 100, 561, 594
HinP1I GCGC 4 cut(s) 94, 100, 561, 594
HinfI GANTC 2 cut(s) 130, 295
HpaII CCGG 9 cut(s) 36, 239, 284, 402, 471, 516, 683, 692, 723
HphI GGTGA 2 cut(s) 199, 391
Hpy166II GTNNAC 3 cut(s) 113, 362, 624
Hpy188I TCNGA 6 cut(s) 27, 79, 142, 610, 675, 753
Hpy188III TCNNGA 1 cut(s) 775
Hpy8I GTNNAC 3 cut(s) 113, 362, 624
Hpy99I CGWCG 4 cut(s) 59, 731, 734, 757
HpyAV CCTTC 3 cut(s) 376, 404, 697
HpyCH4III ACNGT 2 cut(s) 457, 637
HpyCH4IV ACGT 2 cut(s) 275, 422
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 106, 278, 495
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 2 cut(s) 275, 422
Hsp92I GRCGYC 1 cut(s) 561
Hsp92II CATG 3 cut(s) 87, 175, 778
HspAI GCGC 4 cut(s) 94, 100, 561, 594
KasI GGCGCC 1 cut(s) 560
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Kzo9I GATC 1 cut(s) 670
LguI GCTCTTC 1 cut(s) 394
LmnI GCTCC 5 cut(s) 72, 79, 107, 494, 694
Lsp1109I GCAGC 1 cut(s) 288
MabI ACCWGGT 1 cut(s) 572
MaeII ACGT 2 cut(s) 275, 422
MaeIII GTNAC 5 cut(s) 188, 308, 326, 397, 598
MalI GATC 1 cut(s) 672
MboI GATC 1 cut(s) 670
MboII GAAGA 3 cut(s) 381, 706, 769
MhlI GDGCHC 6 cut(s) 63, 320, 389, 417, 491, 746
MluCI AATT 2 cut(s) 709, 802
Mly113I GGCGCC 1 cut(s) 561
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 3 cut(s) 50, 486, 776
MroNI GCCGGC 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 713
MseI TTAA 1 cut(s) 18
MspA1I CMGCKG 2 cut(s) 195, 301
MspI CCGG 9 cut(s) 36, 239, 284, 402, 471, 516, 683, 692, 723
MspR9I CCNGG 4 cut(s) 350, 521, 574, 692
MvaI CCWGG 3 cut(s) 350, 521, 574
MvnI CGCG 2 cut(s) 183, 660
MwoI GCNNNNNNNGC 4 cut(s) 11, 106, 278, 495
NaeI GCCGGC 1 cut(s) 37
NarI GGCGCC 1 cut(s) 561
NciI CCSGG 1 cut(s) 692
NcoI CCATGG 1 cut(s) 83
NdeII GATC 1 cut(s) 670
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 3 cut(s) 87, 175, 778
NlaIV GGNNCC 8 cut(s) 81, 202, 243, 415, 479, 545, 562, 696
NmuCI GTSAC 4 cut(s) 188, 326, 397, 598
PagI TCATGA 1 cut(s) 774
PceI AGGCCT 1 cut(s) 524
PciSI GCTCTTC 1 cut(s) 394
PdiI GCCGGC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 713
PfeI GAWTC 1 cut(s) 295
PflMI CCANNNNNTGG 2 cut(s) 355, 526
PfoI TCCNGGA 1 cut(s) 690
PkrI GCNGC 8 cut(s) 34, 214, 217, 303, 407, 451, 560, 583
PleI GAGTC 1 cut(s) 124
PluTI GGCGCC 1 cut(s) 564
PpsI GAGTC 1 cut(s) 124
PpuMI RGGWCCY 2 cut(s) 200, 477
PshAI GACNNNNGTC 1 cut(s) 134
Psp5II RGGWCCY 2 cut(s) 200, 477
Psp6I CCWGG 3 cut(s) 348, 519, 572
PspGI CCWGG 3 cut(s) 348, 519, 572
PspN4I GGNNCC 8 cut(s) 81, 202, 243, 415, 479, 545, 562, 696
PspOMI GGGCCC 1 cut(s) 413
PspPI GGNCC 7 cut(s) 4, 87, 200, 413, 414, 477, 576
PspPPI RGGWCCY 2 cut(s) 200, 477
PstNI CAGNNNCTG 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 301
RsaI GTAC 2 cut(s) 74, 347
RsaNI GTAC 2 cut(s) 73, 346
SapI GCTCTTC 1 cut(s) 394
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 8 cut(s) 33, 213, 216, 302, 406, 450, 559, 582
Sau3AI GATC 1 cut(s) 670
Sau96I GGNCC 7 cut(s) 4, 87, 200, 413, 414, 477, 576
ScaI AGTACT 1 cut(s) 74
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 4 cut(s) 350, 521, 574, 692
SduI GDGCHC 6 cut(s) 63, 320, 389, 417, 491, 746
SetI ASST 9 cut(s) 16, 69, 278, 303, 425, 479, 578, 608, 738
SexAI ACCWGGT 1 cut(s) 572
SfoI GGCGCC 1 cut(s) 562
SgrAI CRCCGGYG 1 cut(s) 401
SinI GGWCC 4 cut(s) 87, 200, 477, 576
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 2 cut(s) 709, 802
SseBI AGGCCT 1 cut(s) 524
SspDI GGCGCC 1 cut(s) 560
StuI AGGCCT 1 cut(s) 524
StyD4I CCNGG 4 cut(s) 348, 519, 572, 690
StyI CCWWGG 4 cut(s) 40, 83, 288, 525
TaaI ACNGT 2 cut(s) 457, 637
TaiI ACGT 2 cut(s) 278, 425
TaqI TCGA 1 cut(s) 9
TasI AATT 2 cut(s) 709, 802
TatI WGTACW 1 cut(s) 72
TauI GCSGC 7 cut(s) 35, 215, 218, 408, 452, 561, 584
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TseFI GTSAC 4 cut(s) 188, 326, 397, 598
TseI GCWGC 1 cut(s) 301
Tsp45I GTSAC 4 cut(s) 188, 326, 397, 598
TspDTI ATGAA 1 cut(s) 763
Van91I CCANNNNNTGG 2 cut(s) 355, 526
VpaK11BI GGWCC 4 cut(s) 87, 200, 477, 576
XagI CCTNNNNNAGG 1 cut(s) 472
XapI RAATTY 1 cut(s) 709
XcmI CCANNNNNNNNNTGG 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 623
XmnI GAANNNNTTC 1 cut(s) 713
ZrmI AGTACT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.